MD15G1358900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0016164
Physical Location & Seq
Forward (+)
43307408 .. 43310222
2815 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1358900.v1.1.491

Sequence Viewer

Length: 288 bp
ATGAGCGTGAACGGAGGGATGCGGGCCTGCGCAAAGTTGTTGAGGGCTTCTGAAGCTTCTCGATTGAAATCAGGAACTAGAGGGTTCCACTCAAGTGGAGTGAAGAGAATGAGTGATCACGGCCACGATGAACCAGCCTACATGCATGCCAAACACATGTATAACTTGGACCAGATGAAAAACCAGAAGTTGCAGGTGAGCCTTGGAGTGCTCGCTGCCTTCAGCATTGGCGTGGGTGTTCCAATTTGGGCTGTCAATTTCCAACAGAAGAAGACATCCTCTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.33

Weight (kDa)

10.17

Isoelectric Point (pI)

49.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G72020
fragaria_vesca FvH4_5g38800 FvH4_5g38800
malus_domestica MD00G1104100.v1.1 MD15G1358900.v1.1
prunus_persica Prupe.1G506700_v2.0.a1 Prupe.1G506700_v2.0.a1
pyrus_communis pycom08g14850
rosa_chinensis RchiOBHm_Chr7g0240801
rosa_multiflora Rmu_sc0004821.1_g000011
rosa_roxburghii Rroxscaffold_3G00219620
rosa_rugosa Rorug07G0338800
rosa_samantha Rh7CG511700 Rh7DG478400
rosa_wichuraiana Rw7G041740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 184
Acc16I TGCGCA 1 cut(s) 31
Acc36I ACCTGC 1 cut(s) 184
AciI CCGC 1 cut(s) 22
AcoI YGGCCR 1 cut(s) 121
AcuI CTGAAG 2 cut(s) 72, 205
AflIII ACRYGT 1 cut(s) 156
AgsI TTSAA 1 cut(s) 67
AleI CACNNNNGTG 1 cut(s) 93
AluBI AGCT 1 cut(s) 56
AluI AGCT 1 cut(s) 56
Alw21I GWGCWC 1 cut(s) 213
AoxI GGCC 2 cut(s) 24, 121
ApeKI GCWGC 1 cut(s) 215
AspLEI GCGC 1 cut(s) 32
AspS9I GGNCC 2 cut(s) 24, 169
AsuHPI GGTGA 1 cut(s) 208
AvaII GGWCC 1 cut(s) 169
BbsI GAAGAC 1 cut(s) 278
Bbv12I GWGCWC 1 cut(s) 213
BbvI GCAGC 1 cut(s) 202
BceAI ACGGC 1 cut(s) 136
BclI TGATCA 1 cut(s) 115
BfaI CTAG 1 cut(s) 78
BfuAI ACCTGC 1 cut(s) 184
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
Bme18I GGWCC 1 cut(s) 169
BmgT120I GGNCC 2 cut(s) 24, 169
BmiI GGNNCC 1 cut(s) 86
BmsI GCATC 1 cut(s) 9
BpiI GAAGAC 1 cut(s) 278
BpuEI CTTGAG 1 cut(s) 76
BsaBI GATNNNNATC 1 cut(s) 67
BsaJI CCNNGG 1 cut(s) 202
Bse8I GATNNNNATC 1 cut(s) 67
BseDI CCNNGG 1 cut(s) 202
BseGI GGATG 2 cut(s) 24, 275
BseJI GATNNNNATC 1 cut(s) 67
BseXI GCAGC 1 cut(s) 202
BshFI GGCC 2 cut(s) 26, 123
BsiHKAI GWGCWC 1 cut(s) 213
BsnI GGCC 2 cut(s) 26, 123
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 1 cut(s) 115
BspACI CCGC 1 cut(s) 22
BspANI GGCC 2 cut(s) 26, 123
BspLI GGNNCC 1 cut(s) 86
BspMI ACCTGC 1 cut(s) 184
BssECI CCNNGG 1 cut(s) 202
BssMI GATC 1 cut(s) 115
BssT1I CCWWGG 1 cut(s) 202
Bst6I CTCTTC 1 cut(s) 98
BstC8I GCNNGC 4 cut(s) 24, 28, 147, 213
BstF5I GGATG 2 cut(s) 24, 275
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 1 cut(s) 118
BstMBI GATC 1 cut(s) 115
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNSI RCATGY 3 cut(s) 145, 149, 160
BstV1I GCAGC 1 cut(s) 202
BstV2I GAAGAC 1 cut(s) 278
BstXI CCANNNNNNTGG 1 cut(s) 95
BsuRI GGCC 2 cut(s) 26, 123
BtsCI GGATG 2 cut(s) 24, 275
BveI ACCTGC 1 cut(s) 184
Cac8I GCNNGC 4 cut(s) 24, 28, 147, 213
CfoI GCGC 1 cut(s) 32
Cfr13I GGNCC 2 cut(s) 24, 169
CviAII CATG 3 cut(s) 142, 146, 157
CviJI RGCY 7 cut(s) 26, 47, 56, 123, 137, 201, 251
CviKI_1 RGCY 7 cut(s) 26, 47, 56, 123, 137, 201, 251
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
EaeI YGGCCR 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
Eco130I CCWWGG 1 cut(s) 202
Eco47I GGWCC 1 cut(s) 169
Eco57I CTGAAG 2 cut(s) 72, 205
EcoT14I CCWWGG 1 cut(s) 202
EcoT22I ATGCAT 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 202
FaeI CATG 3 cut(s) 145, 149, 160
FaiI YATR 4 cut(s) 143, 147, 158, 162
FatI CATG 3 cut(s) 141, 145, 156
FauI CCCGC 1 cut(s) 15
FbaI TGATCA 1 cut(s) 115
Fnu4HI GCNGC 1 cut(s) 216
FokI GGATG 2 cut(s) 31, 262
Fsp4HI GCNGC 1 cut(s) 216
FspBI CTAG 1 cut(s) 78
FspI TGCGCA 1 cut(s) 31
GlaI GCGC 1 cut(s) 31
GluI GCNGC 1 cut(s) 216
HaeIII GGCC 2 cut(s) 26, 123
HhaI GCGC 1 cut(s) 32
Hin1II CATG 3 cut(s) 145, 149, 160
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HindIII AAGCTT 1 cut(s) 54
HphI GGTGA 1 cut(s) 208
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 1 cut(s) 52
Hpy188III TCNNGA 2 cut(s) 60, 72
Hpy8I GTNNAC 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 229
HpyCH4V TGCA 2 cut(s) 145, 193
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
Hsp92II CATG 3 cut(s) 145, 149, 160
HspAI GCGC 1 cut(s) 30
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 1 cut(s) 115
LpnPI CCDG 7 cut(s) 40, 57, 147, 179, 185, 197, 267
Lsp1109I GCAGC 1 cut(s) 202
LweI GCATC 1 cut(s) 9
MaeI CTAG 1 cut(s) 78
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MboII GAAGA 3 cut(s) 115, 280, 283
MhlI GDGCHC 1 cut(s) 213
MluCI AATT 2 cut(s) 243, 256
MmeI TCCRAC 1 cut(s) 286
MnlI CCTC 3 cut(s) 8, 36, 74
Mph1103I ATGCAT 1 cut(s) 147
MslI CAYNNNNRTG 2 cut(s) 93, 230
MwoI GCNNNNNNNGC 1 cut(s) 53
NdeII GATC 1 cut(s) 115
NlaIII CATG 3 cut(s) 145, 149, 160
NlaIV GGNNCC 1 cut(s) 86
NsbI TGCGCA 1 cut(s) 31
NsiI ATGCAT 1 cut(s) 147
NspI RCATGY 3 cut(s) 145, 149, 160
OliI CACNNNNGTG 1 cut(s) 93
PaeI GCATGC 1 cut(s) 149
PaqCI CACCTGC 1 cut(s) 184
PciI ACATGT 1 cut(s) 156
PkrI GCNGC 1 cut(s) 217
PscI ACATGT 1 cut(s) 156
PspN4I GGNNCC 1 cut(s) 86
PspPI GGNCC 2 cut(s) 24, 169
RseI CAYNNNNRTG 2 cut(s) 93, 230
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 1 cut(s) 115
Sau96I GGNCC 2 cut(s) 24, 169
SduI GDGCHC 1 cut(s) 213
SetI ASST 2 cut(s) 58, 198
SfaNI GCATC 1 cut(s) 9
SinI GGWCC 1 cut(s) 169
SmiMI CAYNNNNRTG 2 cut(s) 93, 230
SmlI CTYRAG 1 cut(s) 91
SmoI CTYRAG 1 cut(s) 91
SphI GCATGC 1 cut(s) 149
Sse9I AATT 2 cut(s) 243, 256
SsiI CCGC 1 cut(s) 22
SspMI CTAG 1 cut(s) 78
StyI CCWWGG 1 cut(s) 202
TaqI TCGA 1 cut(s) 61
TasI AATT 2 cut(s) 243, 256
TseI GCWGC 1 cut(s) 215
TspDTI ATGAA 2 cut(s) 144, 191
TspGWI ACGGA 1 cut(s) 27
VpaK11BI GGWCC 1 cut(s) 169
XceI RCATGY 3 cut(s) 145, 149, 160
XspI CTAG 1 cut(s) 78
Zsp2I ATGCAT 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.