FvH4_5g38800

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
28685649 .. 28688358
2710 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g38800.t2

Sequence Viewer

Length: 288 bp
ATGAGTTTGAGCAATGGGATGAGGACCTGTGCCAAGGTCTTGATGTCTTCAGAAGCATCGCTATCGAAATCAGCTACTAGGGGCTTCCATTCAACTGGAGTAAAGAGGATGGGCGGACATGGCCATGATGAACCCTTCTACATGCATTCCAAGCACATGTATAACTTGGACATGATGAAGCACCAGGCATTGAAGATGAGCCTTGGGGTGTTCACTGCCTTCAGCATCGGTGTGGGTGTTCCAGTATATGCTGTCATCTTCCAACAGAAGAAAACAGCCTCCGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.36

Weight (kDa)

9.93

Isoelectric Point (pI)

55.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016164)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G72020
fragaria_vesca FvH4_5g38800 FvH4_5g38800
malus_domestica MD00G1104100.v1.1 MD15G1358900.v1.1
prunus_persica Prupe.1G506700_v2.0.a1 Prupe.1G506700_v2.0.a1
pyrus_communis pycom08g14850
rosa_chinensis RchiOBHm_Chr7g0240801
rosa_multiflora Rmu_sc0004821.1_g000011
rosa_roxburghii Rroxscaffold_3G00219620
rosa_rugosa Rorug07G0338800
rosa_samantha Rh7CG511700 Rh7DG478400
rosa_wichuraiana Rw7G041740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 114
AcoI YGGCCR 1 cut(s) 121
AcuI CTGAAG 2 cut(s) 33, 205
AflIII ACRYGT 1 cut(s) 156
AgsI TTSAA 2 cut(s) 93, 193
AjnI CCWGG 1 cut(s) 183
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
AoxI GGCC 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 24
AvaII GGWCC 1 cut(s) 24
BalI TGGCCA 1 cut(s) 123
BbsI GAAGAC 1 cut(s) 39
BccI CCATC 1 cut(s) 103
BcgI CGANNNNNNTGC 2 cut(s) 45, 79
BciT130I CCWGG 1 cut(s) 185
BfaI CTAG 1 cut(s) 78
Bme1390I CCNGG 1 cut(s) 185
Bme18I GGWCC 1 cut(s) 24
BmgT120I GGNCC 1 cut(s) 24
BmrFI CCNGG 1 cut(s) 185
BmsI GCATC 2 cut(s) 65, 234
BpiI GAAGAC 1 cut(s) 39
BpmI CTGGAG 1 cut(s) 117
BsaJI CCNNGG 2 cut(s) 33, 202
BsaWI WCCGGW 1 cut(s) 281
Bse1I ACTGG 2 cut(s) 100, 242
Bse3DI GCAATG 1 cut(s) 19
BseBI CCWGG 1 cut(s) 185
BseDI CCNNGG 2 cut(s) 33, 202
BseGI GGATG 2 cut(s) 24, 114
BseMI GCAATG 1 cut(s) 19
BseNI ACTGG 2 cut(s) 100, 242
BshFI GGCC 1 cut(s) 123
BsiSI CCGG 1 cut(s) 282
BsmI GAATGC 1 cut(s) 145
BsnI GGCC 1 cut(s) 123
BspACI CCGC 1 cut(s) 114
BspANI GGCC 1 cut(s) 123
BsrDI GCAATG 1 cut(s) 19
BsrI ACTGG 2 cut(s) 100, 242
BssECI CCNNGG 2 cut(s) 33, 202
BssT1I CCWWGG 2 cut(s) 33, 202
Bst2UI CCWGG 1 cut(s) 185
BstF5I GGATG 2 cut(s) 24, 114
BstMWI GCNNNNNNNGC 2 cut(s) 120, 151
BstNI CCWGG 1 cut(s) 185
BstNSI RCATGY 2 cut(s) 145, 160
BstSCI CCNGG 1 cut(s) 183
BstV2I GAAGAC 1 cut(s) 39
BstXI CCANNNNNNTGG 1 cut(s) 95
BsuRI GGCC 1 cut(s) 123
BtgZI GCGATG 1 cut(s) 42
BtsCI GGATG 2 cut(s) 24, 114
BtsI GCAGTG 1 cut(s) 213
BtsIMutI CAGTG 1 cut(s) 213
Cfr13I GGNCC 1 cut(s) 24
CviAII CATG 5 cut(s) 119, 125, 142, 157, 172
CviJI RGCY 5 cut(s) 74, 84, 123, 201, 278
CviKI_1 RGCY 5 cut(s) 74, 84, 123, 201, 278
EaeI YGGCCR 1 cut(s) 121
EciI GGCGGA 1 cut(s) 129
Eco130I CCWWGG 2 cut(s) 33, 202
Eco47I GGWCC 1 cut(s) 24
Eco57I CTGAAG 2 cut(s) 33, 205
EcoO109I RGGNCCY 1 cut(s) 24
EcoRII CCWGG 1 cut(s) 183
EcoT14I CCWWGG 2 cut(s) 33, 202
EcoT22I ATGCAT 1 cut(s) 147
ErhI CCWWGG 2 cut(s) 33, 202
FaeI CATG 5 cut(s) 122, 128, 145, 160, 175
FaiI YATR 8 cut(s) 120, 126, 143, 158, 162, 173, 247, 249
FatI CATG 5 cut(s) 118, 124, 141, 156, 171
FokI GGATG 2 cut(s) 31, 121
FspBI CTAG 1 cut(s) 78
GsuI CTGGAG 1 cut(s) 117
HaeIII GGCC 1 cut(s) 123
HapII CCGG 1 cut(s) 282
Hin1II CATG 5 cut(s) 122, 128, 145, 160, 175
HpaII CCGG 1 cut(s) 282
Hpy166II GTNNAC 1 cut(s) 213
Hpy188I TCNGA 1 cut(s) 52
Hpy188III TCNNGA 1 cut(s) 40
Hpy8I GTNNAC 1 cut(s) 213
HpyAV CCTTC 2 cut(s) 145, 229
HpyCH4V TGCA 1 cut(s) 145
HpyF10VI GCNNNNNNNGC 2 cut(s) 120, 151
Hsp92II CATG 5 cut(s) 122, 128, 145, 160, 175
LpnPI CCDG 5 cut(s) 40, 81, 170, 197, 255
LweI GCATC 2 cut(s) 65, 234
MaeI CTAG 1 cut(s) 78
MboII GAAGA 4 cut(s) 39, 205, 250, 280
MlsI TGGCCA 1 cut(s) 123
MluNI TGGCCA 1 cut(s) 123
MmeI TCCRAC 1 cut(s) 286
MnlI CCTC 2 cut(s) 15, 99
Mox20I TGGCCA 1 cut(s) 123
Mph1103I ATGCAT 1 cut(s) 147
MscI TGGCCA 1 cut(s) 123
MslI CAYNNNNRTG 2 cut(s) 123, 230
Msp20I TGGCCA 1 cut(s) 123
MspI CCGG 1 cut(s) 282
MspR9I CCNGG 1 cut(s) 185
Mva1269I GAATGC 1 cut(s) 145
MvaI CCWGG 1 cut(s) 185
MwoI GCNNNNNNNGC 2 cut(s) 120, 151
NlaIII CATG 5 cut(s) 122, 128, 145, 160, 175
NsiI ATGCAT 1 cut(s) 147
NspI RCATGY 2 cut(s) 145, 160
PciI ACATGT 1 cut(s) 156
PctI GAATGC 1 cut(s) 145
PpuMI RGGWCCY 1 cut(s) 24
PscI ACATGT 1 cut(s) 156
Psp5II RGGWCCY 1 cut(s) 24
Psp6I CCWGG 1 cut(s) 183
PspGI CCWGG 1 cut(s) 183
PspPI GGNCC 1 cut(s) 24
PspPPI RGGWCCY 1 cut(s) 24
RseI CAYNNNNRTG 2 cut(s) 123, 230
Sau96I GGNCC 1 cut(s) 24
ScrFI CCNGG 1 cut(s) 185
SetI ASST 3 cut(s) 29, 39, 76
SfaNI GCATC 2 cut(s) 65, 234
SinI GGWCC 1 cut(s) 24
SmiMI CAYNNNNRTG 2 cut(s) 123, 230
SsiI CCGC 1 cut(s) 114
SspMI CTAG 1 cut(s) 78
StyD4I CCNGG 1 cut(s) 183
StyI CCWWGG 2 cut(s) 33, 202
TaqI TCGA 1 cut(s) 65
TscAI CASTG 1 cut(s) 220
TspDTI ATGAA 2 cut(s) 144, 191
TspRI CASTG 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 24
XceI RCATGY 2 cut(s) 145, 160
XspI CTAG 1 cut(s) 78
Zsp2I ATGCAT 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.