AT1G72430

positive regulation of cell growth

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016537
Physical Location & Seq
Reverse (-)
27264602 .. 27265806
1205 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G72430.1

Sequence Viewer

Length: 360 bp
ATGGCCAAAGTTGGGAAGCTGACAAAGCTTAAGTCGGCTATGAAGAAATGGCCTTCTTTCGCCAAGAACCACCACCACTCAACCTCCTCAGCCGCTGTTTCCGACGAACTCTCAGAAGACAACAATCTCCATGTGGTTTACGTTGGTCAAACTCGAAGACCTTACATGCTTAGACCAGACATCATCTCTCACCCACTCTTTCAAGAACTCGTGGATCGGTCTTCTTCTAGATCCATCGAACAAGATCGTGAGATTGTTGTAGCTTGTGAAGTCGTTTTGTTCGAGCACTTGCTGTGGATGCTCAAGTCTGGTCAAGAAGGAGGATCCGTTGAAGAATTGGCTGAGTTCTATACTTATTGA

Protein Analysis

119

Amino Acids

13.59

Weight (kDa)

6.29

Isoelectric Point (pI)

57.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 9 - 101 8.2e-21 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016537)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G72430
fragaria_vesca FvH4_6g35410
prunus_persica Prupe.3G035000_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0146941
rosa_laevigata RLG00000020228
rosa_multiflora Rmu_sc0003317.1_g000007 Rmu_sc0003317.1_g000008
rosa_roxburghii Rroxscaffold_2G00099840
rosa_rugosa Rorug02G0397600
rosa_samantha Rh2AG454100 Rh2BG466800 Rh2CG441200 Rh2DG475700
rosa_wichuraiana Rw2G037080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 93
AclWI GGATC 4 cut(s) 222, 225, 318, 331
AcoI YGGCCR 1 cut(s) 3
AfiI CCNNNNNNNGG 1 cut(s) 12
AflII CTTAAG 1 cut(s) 29
AgsI TTSAA 2 cut(s) 203, 332
AluBI AGCT 3 cut(s) 19, 28, 263
AluI AGCT 3 cut(s) 19, 28, 263
Alw21I GWGCWC 1 cut(s) 288
AlwI GGATC 4 cut(s) 222, 225, 318, 331
AlwNI CAGNNNCTG 1 cut(s) 95
AoxI GGCC 2 cut(s) 3, 50
ArsI GACNNNNNNTTYG 2 cut(s) 17, 49
AsuHPI GGTGA 1 cut(s) 182
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 323
BauI CACGAG 1 cut(s) 209
BbsI GAAGAC 3 cut(s) 123, 163, 213
Bbv12I GWGCWC 1 cut(s) 288
BbvCI CCTCAGC 1 cut(s) 88
BccI CCATC 1 cut(s) 242
BfaI CTAG 1 cut(s) 228
BfrI CTTAAG 1 cut(s) 29
BisI GCNGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 94
BmiI GGNNCC 1 cut(s) 325
BmsI GCATC 1 cut(s) 288
BpiI GAAGAC 3 cut(s) 123, 163, 213
Bpu10I CCTNAGC 1 cut(s) 88
BpuEI CTTGAG 1 cut(s) 287
BsaXI ACNNNNNCTCC 4 cut(s) 68, 98, 312, 342
Bsc4I CCNNNNNNNGG 1 cut(s) 12
BseGI GGATG 1 cut(s) 303
BseLI CCNNNNNNNGG 1 cut(s) 12
BseMII CTCAG 3 cut(s) 102, 126, 333
BseRI GAGGAG 1 cut(s) 76
BshFI GGCC 2 cut(s) 5, 52
BsiHKAI GWGCWC 1 cut(s) 288
BslI CCNNNNNNNGG 1 cut(s) 12
BsnI GGCC 2 cut(s) 5, 52
Bsp1286I GDGCHC 1 cut(s) 288
Bsp143I GATC 4 cut(s) 214, 230, 244, 323
BspACI CCGC 1 cut(s) 93
BspANI GGCC 2 cut(s) 5, 52
BspCNI CTCAG 3 cut(s) 101, 125, 334
BspLI GGNNCC 1 cut(s) 325
BspPI GGATC 4 cut(s) 222, 225, 318, 331
BspTI CTTAAG 1 cut(s) 29
BssMI GATC 4 cut(s) 214, 230, 244, 323
BssSI CACGAG 1 cut(s) 209
Bst2BI CACGAG 1 cut(s) 209
BstAFI CTTAAG 1 cut(s) 29
BstDEI CTNAG 4 cut(s) 88, 112, 170, 342
BstF5I GGATG 1 cut(s) 303
BstKTI GATC 4 cut(s) 217, 233, 247, 326
BstMBI GATC 4 cut(s) 214, 230, 244, 323
BstMWI GCNNNNNNNGC 2 cut(s) 25, 298
BstNSI RCATGY 1 cut(s) 169
BstV2I GAAGAC 3 cut(s) 123, 163, 213
BstX2I RGATCY 2 cut(s) 230, 323
BstYI RGATCY 2 cut(s) 230, 323
BsuRI GGCC 2 cut(s) 5, 52
BtsCI GGATG 1 cut(s) 303
CaiI CAGNNNCTG 1 cut(s) 95
CviAII CATG 2 cut(s) 131, 166
CviJI RGCY 8 cut(s) 5, 19, 28, 38, 52, 92, 263, 341
CviKI_1 RGCY 8 cut(s) 5, 19, 28, 38, 52, 92, 263, 341
DdeI CTNAG 4 cut(s) 88, 112, 170, 342
DpnI GATC 4 cut(s) 216, 232, 246, 325
DpnII GATC 4 cut(s) 214, 230, 244, 323
EaeI YGGCCR 1 cut(s) 3
FaeI CATG 2 cut(s) 134, 169
FaiI YATR 4 cut(s) 41, 132, 167, 351
FatI CATG 2 cut(s) 130, 165
Fnu4HI GCNGC 1 cut(s) 93
FokI GGATG 1 cut(s) 310
Fsp4HI GCNGC 1 cut(s) 93
FspBI CTAG 1 cut(s) 228
GluI GCNGC 1 cut(s) 93
HaeIII GGCC 2 cut(s) 5, 52
Hin1II CATG 2 cut(s) 134, 169
HindIII AAGCTT 1 cut(s) 26
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 2 cut(s) 103, 115
Hpy188III TCNNGA 4 cut(s) 203, 228, 248, 314
Hpy8I GTNNAC 1 cut(s) 139
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 2 cut(s) 63, 311
HpyCH4IV ACGT 1 cut(s) 141
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 298
HpyF3I CTNAG 4 cut(s) 88, 112, 170, 342
HpySE526I ACGT 1 cut(s) 141
Hsp92II CATG 2 cut(s) 134, 169
Kzo9I GATC 4 cut(s) 214, 230, 244, 323
LpnPI CCDG 2 cut(s) 189, 294
LweI GCATC 1 cut(s) 288
MaeI CTAG 1 cut(s) 228
MaeII ACGT 1 cut(s) 141
MalI GATC 4 cut(s) 216, 232, 246, 325
MboI GATC 4 cut(s) 214, 230, 244, 323
MboII GAAGA 6 cut(s) 55, 128, 168, 213, 216, 344
MflI RGATCY 2 cut(s) 230, 323
MhlI GDGCHC 1 cut(s) 288
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 335
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 126
MnlI CCTC 3 cut(s) 94, 97, 314
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 30
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 95
MspCI CTTAAG 1 cut(s) 29
MwoI GCNNNNNNNGC 2 cut(s) 25, 298
NdeII GATC 4 cut(s) 214, 230, 244, 323
NlaIII CATG 2 cut(s) 134, 169
NlaIV GGNNCC 1 cut(s) 325
NspI RCATGY 1 cut(s) 169
PcsI WCGNNNNNNNCGW 1 cut(s) 279
PkrI GCNGC 1 cut(s) 94
PspN4I GGNNCC 1 cut(s) 325
PstNI CAGNNNCTG 1 cut(s) 95
PsuI RGATCY 2 cut(s) 230, 323
SaqAI TTAA 1 cut(s) 30
SatI GCNGC 1 cut(s) 93
Sau3AI GATC 4 cut(s) 214, 230, 244, 323
SduI GDGCHC 1 cut(s) 288
SetI ASST 6 cut(s) 21, 30, 86, 144, 163, 265
SfaNI GCATC 1 cut(s) 288
SmlI CTYRAG 2 cut(s) 29, 302
SmoI CTYRAG 2 cut(s) 29, 302
Sse9I AATT 1 cut(s) 335
SsiI CCGC 1 cut(s) 93
SspMI CTAG 1 cut(s) 228
TaiI ACGT 1 cut(s) 144
TaqI TCGA 3 cut(s) 154, 237, 282
TaqII GACCGA 1 cut(s) 207
TasI AATT 1 cut(s) 335
TauI GCSGC 1 cut(s) 95
Tru1I TTAA 1 cut(s) 30
Tru9I TTAA 1 cut(s) 30
TspDTI ATGAA 1 cut(s) 56
TspGWI ACGGA 1 cut(s) 316
Vha464I CTTAAG 1 cut(s) 29
XbaI TCTAGA 1 cut(s) 227
XceI RCATGY 1 cut(s) 169
XspI CTAG 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.