Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0016537

Physical Location & Seq

Genomic Coordinates Reverse (-)

68867708 .. 68868867

Gene Structure 1160 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG475700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGCGAAGACAGGGAAGCTGACGAAGCTCAAGTCGGCCATAAAGAGATGGCCCTCCTTCACCAAACTGGCTCGCACCACAAGCTCCATAGCCGCCACAAACGACGATTCTTCCTCCGACCAATACGTCGACAACGACAGGGCAGTGATCTCCAAGCAGCTTCACGCCGTCTACGTGGGGAAGTCGCGGCGGCGGTACATGGTGAGCTCCGACGTGGTGGAGCACCCCATAATTCAAGAGCTGGTGGACAAGTCATGTGAGGAAGAAGAAGGGGTTGTGGTGGTGACTTGCGAGGTCGTGCTTTTCGAGCACTTGCTGTGGATGCTTGAGAACGCCGAGACTCAGTTGGGTTCCATGGACGAGCTGGTTGAGTTCTACACTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0008150 GO:0016020 GO:0019897 GO:0019898 GO:0030307 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045927 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

128

Amino Acids

14.48

Weight (kDa)

5.19

Isoelectric Point (pI)

44.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	10 - 109	2.8e-20	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0016537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72430
fragaria_vesca	FvH4_6g35410
prunus_persica	Prupe.3G035000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0146941
rosa_laevigata	RLG00000020228
rosa_multiflora	Rmu_sc0003317.1_g000007 Rmu_sc0003317.1_g000008
rosa_roxburghii	Rroxscaffold_2G00099840
rosa_rugosa	Rorug02G0397600
rosa_samantha	Rh2AG454100 Rh2BG466800 Rh2CG441200 Rh2DG475700
rosa_wichuraiana	Rw2G037080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	125
AccI	GTMKAC	2 cut(s)	129, 171
AccII	CGCG	1 cut(s)	187
AciI	CCGC	4 cut(s)	93, 187, 190, 193
AcoI	YGGCCR	1 cut(s)	36
AfaI	GTAC	1 cut(s)	197
AgsI	TTSAA	1 cut(s)	236
AjiI	CACGTC	1 cut(s)	214
AluBI	AGCT	7 cut(s)	19, 28, 84, 160, 207, 241, 364
AluI	AGCT	7 cut(s)	19, 28, 84, 160, 207, 241, 364
Alw21I	GWGCWC	3 cut(s)	209, 225, 312
Alw26I	GTCTC	1 cut(s)	332
AoxI	GGCC	2 cut(s)	36, 50
ApeKI	GCWGC	1 cut(s)	157
ArsI	GACNNNNNNTTYG	2 cut(s)	17, 49
AspS9I	GGNCC	1 cut(s)	51
AsuHPI	GGTGA	3 cut(s)	52, 214, 295
BanII	GRGCYC	1 cut(s)	209
BbsI	GAAGAC	1 cut(s)	14
Bbv12I	GWGCWC	3 cut(s)	209, 225, 312
BbvI	GCAGC	1 cut(s)	169
BccI	CCATC	1 cut(s)	42
BceAI	ACGGC	1 cut(s)	152
BcoDI	GTCTC	1 cut(s)	332
BisI	GCNGC	4 cut(s)	93, 158, 188, 191
BlsI	GCNGC	4 cut(s)	94, 159, 189, 192
BmgBI	CACGTC	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	51
BmiI	GGNNCC	1 cut(s)	352
BmsI	GCATC	1 cut(s)	312
BpiI	GAAGAC	1 cut(s)	14
BpuEI	CTTGAG	2 cut(s)	14, 347
BsaAI	YACGTR	1 cut(s)	175
BsaJI	CCNNGG	1 cut(s)	354
Bse1I	ACTGG	1 cut(s)	72
BseDI	CCNNGG	1 cut(s)	354
BseGI	GGATG	1 cut(s)	327
BseMII	CTCAG	1 cut(s)	356
BseNI	ACTGG	1 cut(s)	72
BseXI	GCAGC	1 cut(s)	169
Bsh1236I	CGCG	1 cut(s)	187
BshFI	GGCC	2 cut(s)	38, 52
BsiHKAI	GWGCWC	3 cut(s)	209, 225, 312
BsmAI	GTCTC	1 cut(s)	332
BsnI	GGCC	2 cut(s)	38, 52
Bsp1286I	GDGCHC	3 cut(s)	209, 225, 312
Bsp143I	GATC	1 cut(s)	147
Bsp19I	CCATGG	1 cut(s)	354
BspACI	CCGC	4 cut(s)	93, 187, 190, 193
BspANI	GGCC	2 cut(s)	38, 52
BspCNI	CTCAG	1 cut(s)	355
BspFNI	CGCG	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	352
BsrI	ACTGG	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	354
BssMI	GATC	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	354
BstBAI	YACGTR	1 cut(s)	175
BstC8I	GCNNGC	1 cut(s)	73
BstDEI	CTNAG	1 cut(s)	342
BstDSI	CCRYGG	1 cut(s)	354
BstF5I	GGATG	1 cut(s)	327
BstFNI	CGCG	1 cut(s)	187
BstKTI	GATC	1 cut(s)	150
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	1 cut(s)	147
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 81, 307, 322
BstUI	CGCG	1 cut(s)	187
BstV1I	GCAGC	1 cut(s)	169
BstV2I	GAAGAC	1 cut(s)	14
BsuRI	GGCC	2 cut(s)	38, 52
BtgI	CCRYGG	1 cut(s)	354
BtrI	CACGTC	1 cut(s)	214
BtsCI	GGATG	1 cut(s)	327
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	51
Csp6I	GTAC	1 cut(s)	196
CviAII	CATG	3 cut(s)	199, 255, 355
CviQI	GTAC	1 cut(s)	196
DdeI	CTNAG	1 cut(s)	342
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
DrdI	GACNNNNNNGTC	1 cut(s)	125
DseDI	GACNNNNNNGTC	1 cut(s)	125
EaeI	YGGCCR	1 cut(s)	36
Ecl136II	GAGCTC	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	354
Eco24I	GRGCYC	1 cut(s)	209
Eco53kI	GAGCTC	1 cut(s)	207
EcoICRI	GAGCTC	1 cut(s)	207
EcoT14I	CCWWGG	1 cut(s)	354
EcoT38I	GRGCYC	1 cut(s)	209
ErhI	CCWWGG	1 cut(s)	354
FaeI	CATG	3 cut(s)	202, 258, 358
FaiI	YATR	6 cut(s)	41, 89, 200, 230, 256, 356
FatI	CATG	3 cut(s)	198, 254, 354
FblI	GTMKAC	2 cut(s)	129, 171
Fnu4HI	GCNGC	4 cut(s)	93, 158, 188, 191
FokI	GGATG	1 cut(s)	334
FriOI	GRGCYC	1 cut(s)	209
Fsp4HI	GCNGC	4 cut(s)	93, 158, 188, 191
GluI	GCNGC	4 cut(s)	93, 158, 188, 191
HaeIII	GGCC	2 cut(s)	38, 52
Hin1II	CATG	3 cut(s)	202, 258, 358
HincII	GTYRAC	1 cut(s)	130
HindII	GTYRAC	1 cut(s)	130
HinfI	GANTC	2 cut(s)	107, 340
HphI	GGTGA	3 cut(s)	52, 214, 295
Hpy166II	GTNNAC	3 cut(s)	130, 172, 247
Hpy188I	TCNGA	2 cut(s)	118, 211
Hpy188III	TCNNGA	1 cut(s)	236
Hpy8I	GTNNAC	3 cut(s)	130, 172, 247
Hpy99I	CGWCG	3 cut(s)	107, 131, 215
HpyAV	CCTTC	2 cut(s)	67, 263
HpyCH4IV	ACGT	3 cut(s)	126, 174, 213
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 81, 307, 322
HpyF3I	CTNAG	1 cut(s)	342
HpySE526I	ACGT	3 cut(s)	126, 174, 213
Hsp92II	CATG	3 cut(s)	202, 258, 358
Kzo9I	GATC	1 cut(s)	147
LmnI	GCTCC	3 cut(s)	89, 212, 220
LpnPI	CCDG	4 cut(s)	53, 124, 227, 350
Lsp1109I	GCAGC	1 cut(s)	169
LweI	GCATC	1 cut(s)	312
MaeII	ACGT	3 cut(s)	126, 174, 213
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MboII	GAAGA	4 cut(s)	19, 102, 275, 278
MhlI	GDGCHC	3 cut(s)	209, 225, 312
MluCI	AATT	1 cut(s)	231
MlyI	GAGTC	1 cut(s)	334
MmeI	TCCRAC	2 cut(s)	141, 234
MnlI	CCTC	4 cut(s)	64, 124, 253, 286
MvnI	CGCG	1 cut(s)	187
MwoI	GCNNNNNNNGC	4 cut(s)	25, 81, 307, 322
NcoI	CCATGG	1 cut(s)	354
NdeII	GATC	1 cut(s)	147
NlaIII	CATG	3 cut(s)	202, 258, 358
NlaIV	GGNNCC	1 cut(s)	352
NmeAIII	GCCGAG	1 cut(s)	361
NmuCI	GTSAC	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	3 cut(s)	132, 171, 303
PfeI	GAWTC	1 cut(s)	107
PkrI	GCNGC	4 cut(s)	94, 159, 189, 192
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
Ppu21I	YACGTR	1 cut(s)	175
Psp124BI	GAGCTC	1 cut(s)	209
PspN4I	GGNNCC	1 cut(s)	352
PspPI	GGNCC	1 cut(s)	51
RsaI	GTAC	1 cut(s)	197
RsaNI	GTAC	1 cut(s)	196
SacI	GAGCTC	1 cut(s)	209
SalI	GTCGAC	1 cut(s)	128
SatI	GCNGC	4 cut(s)	93, 158, 188, 191
Sau3AI	GATC	1 cut(s)	147
Sau96I	GGNCC	1 cut(s)	51
SchI	GAGTC	1 cut(s)	334
SduI	GDGCHC	3 cut(s)	209, 225, 312
SfaNI	GCATC	1 cut(s)	312
SmlI	CTYRAG	2 cut(s)	29, 326
SmoI	CTYRAG	2 cut(s)	29, 326
Sse9I	AATT	1 cut(s)	231
SsiI	CCGC	4 cut(s)	93, 187, 190, 193
SstI	GAGCTC	1 cut(s)	209
StyI	CCWWGG	1 cut(s)	354
TaiI	ACGT	3 cut(s)	129, 177, 216
TaqI	TCGA	2 cut(s)	129, 306
TasI	AATT	1 cut(s)	231
TauI	GCSGC	3 cut(s)	95, 190, 193
TfiI	GAWTC	1 cut(s)	107
TscAI	CASTG	1 cut(s)	150
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	1 cut(s)	157
Tsp45I	GTSAC	1 cut(s)	283
TspRI	CASTG	1 cut(s)	150
XcmI	CCANNNNNNNNNTGG	1 cut(s)	361
XmiI	GTMKAC	2 cut(s)	129, 171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.