Rorug02G0397600

Auxin responsive protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0016537
Physical Location & Seq
Reverse (-)
50792163 .. 50792994
832 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0397600.1

Sequence Viewer

Length: 747 bp
ATGGGTCACATTTCTGAGCTACTTGACGAGGTTCTTGCTATAATTATCAACCGGCTCACCTACAGCTGGGACCGAGATGCCCTGTCTGAGGTGTCAAAGCAACTATTGAAGGCTAGGCGCTGGTGCCGTTCCTCAATTCGCTATTATCGTGAACTTCCGAACCGGAGATTGCTCTCACAGTGTCCAAATGTAGTGGAGTTTGCATCTTCTGGTGCTCTTTCCGATGAAGACTTGAGCTTCGTGGCCCAAGCGTGTCCAAAGTTAGAGATCTTGGATCTCAGGCTCTCTGCTGCAAATGCAATGGTACCACCAAATCGACGTTCTTTGTTGAATGGGATTCTTTCTGTGGCACACGGCTGTCCTAAATTGGTTCAGCCTGGAGGCATGATTCGAGATGCAGATATTCAAGTCCTGTCACGTATTACTTCTCTGGCGCATCTGGATCTTAGGCACTGCTTCTATGTCACAGATATGGCACTGTGCTACCTCAATGGTATGGCTCTGCACTATTTAGATTTATCCGCTTGTGCTATTAGTGATATTGGGATCGAGATACTTGTGAAAGGTTCTTCGTCAAGAACCATGAAAACGCTTATCCTTCAAGGATGCTCTCGAATCACTGATAGAGGAATTCTAATGTTGCATAATCTGTCCAATCTCGAGGAGCTGAATTTGGGTATACATGATGCCGCCCATTATGCATTACTTGATGGACTTATTTTTGATGATGTGTCACTTTCTGATTGA

Protein Analysis

248

Amino Acids

27.53

Weight (kDa)

6.05

Isoelectric Point (pI)

55.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7885 PF25372 135 - 218 3.1e-10 Leucine Rich Repeat Domain of unknown function (DUF7885)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016537)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G72430
fragaria_vesca FvH4_6g35410
prunus_persica Prupe.3G035000_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0146941
rosa_laevigata RLG00000020228
rosa_multiflora Rmu_sc0003317.1_g000007 Rmu_sc0003317.1_g000008
rosa_roxburghii Rroxscaffold_2G00099840
rosa_rugosa Rorug02G0397600
rosa_samantha Rh2AG454100 Rh2BG466800 Rh2CG441200 Rh2DG475700
rosa_wichuraiana Rw2G037080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 304
AccB1I GGYRCC 2 cut(s) 123, 304
AccI GTMKAC 1 cut(s) 679
AciI CCGC 2 cut(s) 522, 690
AclWI GGATC 3 cut(s) 282, 450, 554
AcsI RAATTY 2 cut(s) 630, 670
AfaI GTAC 1 cut(s) 306
AfiI CCNNNNNNNGG 2 cut(s) 66, 88
AgsI TTSAA 4 cut(s) 109, 331, 407, 602
AjnI CCWGG 1 cut(s) 376
AjuI GAANNNNNNNTTGG 2 cut(s) 304, 336
AluBI AGCT 4 cut(s) 19, 66, 237, 667
AluI AGCT 4 cut(s) 19, 66, 237, 667
Alw21I GWGCWC 1 cut(s) 217
AlwI GGATC 3 cut(s) 282, 450, 554
Ama87I CYCGRG 1 cut(s) 659
AoxI GGCC 1 cut(s) 243
ApeKI GCWGC 1 cut(s) 290
ApoI RAATTY 2 cut(s) 630, 670
ArsI GACNNNNNNTTYG 2 cut(s) 221, 253
Asp718I GGTACC 1 cut(s) 304
AspLEI GCGC 2 cut(s) 120, 436
AspS9I GGNCC 2 cut(s) 70, 244
AsuHPI GGTGA 1 cut(s) 49
AvaI CYCGRG 1 cut(s) 659
AvaII GGWCC 1 cut(s) 70
BanI GGYRCC 2 cut(s) 123, 304
BbsI GAAGAC 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 217
BbvI GCAGC 1 cut(s) 277
BccI CCATC 1 cut(s) 704
BceAI ACGGC 2 cut(s) 111, 370
BcgI CGANNNNNNTGC 2 cut(s) 17, 51
BciT130I CCWGG 1 cut(s) 378
BfaI CTAG 1 cut(s) 114
BfmI CTRYAG 1 cut(s) 61
BfoI RGCGCY 1 cut(s) 121
BglII AGATCT 1 cut(s) 267
BisI GCNGC 2 cut(s) 291, 690
BlsI GCNGC 2 cut(s) 292, 691
Bme1390I CCNGG 1 cut(s) 378
Bme18I GGWCC 1 cut(s) 70
BmeT110I CYCGRG 1 cut(s) 659
BmgT120I GGNCC 2 cut(s) 70, 244
BmiI GGNNCC 3 cut(s) 71, 125, 306
BmrFI CCNGG 1 cut(s) 378
BmsI GCATC 6 cut(s) 67, 212, 385, 445, 596, 676
BpiI GAAGAC 1 cut(s) 234
BpmI CTGGAG 1 cut(s) 399
BpuEI CTTGAG 1 cut(s) 253
BsaAI YACGTR 1 cut(s) 419
BsaWI WCCGGW 1 cut(s) 162
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 88
Bse118I RCCGGY 1 cut(s) 51
Bse3DI GCAATG 1 cut(s) 306
BseBI CCWGG 1 cut(s) 378
BseGI GGATG 1 cut(s) 611
BseLI CCNNNNNNNGG 2 cut(s) 66, 88
BseMI GCAATG 1 cut(s) 306
BseMII CTCAG 3 cut(s) 6, 78, 292
BseRI GAGGAG 1 cut(s) 677
BseXI GCAGC 1 cut(s) 277
BseYI CCCAGC 1 cut(s) 66
BsgI GTGCAG 1 cut(s) 488
BshFI GGCC 1 cut(s) 245
BshNI GGYRCC 2 cut(s) 123, 304
BsiHKAI GWGCWC 1 cut(s) 217
BsiHKCI CYCGRG 1 cut(s) 659
BsiSI CCGG 2 cut(s) 52, 163
BslFI GGGAC 1 cut(s) 83
BslI CCNNNNNNNGG 2 cut(s) 66, 88
BsmFI GGGAC 1 cut(s) 83
BsnI GGCC 1 cut(s) 245
BsoBI CYCGRG 1 cut(s) 659
Bsp1286I GDGCHC 1 cut(s) 217
Bsp143I GATC 4 cut(s) 267, 274, 442, 546
BspACI CCGC 2 cut(s) 522, 690
BspANI GGCC 1 cut(s) 245
BspCNI CTCAG 3 cut(s) 7, 79, 291
BspLI GGNNCC 3 cut(s) 71, 125, 306
BspPI GGATC 3 cut(s) 282, 450, 554
BspT107I GGYRCC 2 cut(s) 123, 304
BsrDI GCAATG 1 cut(s) 306
BsrFI RCCGGY 1 cut(s) 51
BssAI RCCGGY 1 cut(s) 51
BssMI GATC 4 cut(s) 267, 274, 442, 546
BssNAI GTATAC 1 cut(s) 680
Bst1107I GTATAC 1 cut(s) 680
Bst2UI CCWGG 1 cut(s) 378
Bst4CI ACNGT 2 cut(s) 180, 480
BstBAI YACGTR 1 cut(s) 419
BstDEI CTNAG 4 cut(s) 15, 87, 278, 446
BstENI CCTNNNNNAGG 1 cut(s) 86
BstF5I GGATG 1 cut(s) 611
BstH2I RGCGCY 1 cut(s) 121
BstHHI GCGC 2 cut(s) 120, 436
BstKTI GATC 4 cut(s) 270, 277, 445, 549
BstMBI GATC 4 cut(s) 267, 274, 442, 546
BstMWI GCNNNNNNNGC 2 cut(s) 296, 698
BstNI CCWGG 1 cut(s) 378
BstSCI CCNGG 1 cut(s) 376
BstSFI CTRYAG 1 cut(s) 61
BstV1I GCAGC 1 cut(s) 277
BstV2I GAAGAC 1 cut(s) 234
BstX2I RGATCY 3 cut(s) 267, 274, 442
BstYI RGATCY 3 cut(s) 267, 274, 442
BstZ17I GTATAC 1 cut(s) 680
BsuRI GGCC 1 cut(s) 245
BtsCI GGATG 1 cut(s) 611
BtsI GCAGTG 1 cut(s) 451
BtsIMutI CAGTG 4 cut(s) 185, 451, 476, 618
CfoI GCGC 2 cut(s) 120, 436
Cfr10I RCCGGY 1 cut(s) 51
Cfr13I GGNCC 2 cut(s) 70, 244
Csp6I GTAC 1 cut(s) 305
CspCI CAANNNNNGTGG 2 cut(s) 174, 209
CviAII CATG 3 cut(s) 385, 583, 683
CviQI GTAC 1 cut(s) 305
DdeI CTNAG 4 cut(s) 15, 87, 278, 446
DpnI GATC 4 cut(s) 269, 276, 444, 548
DpnII GATC 4 cut(s) 267, 274, 442, 546
Eco47I GGWCC 1 cut(s) 70
Eco88I CYCGRG 1 cut(s) 659
EcoNI CCTNNNNNAGG 1 cut(s) 86
EcoRI GAATTC 1 cut(s) 630
EcoRII CCWGG 1 cut(s) 376
EcoT22I ATGCAT 1 cut(s) 703
FaeI CATG 3 cut(s) 388, 586, 686
FaqI GGGAC 1 cut(s) 83
FatI CATG 3 cut(s) 384, 582, 682
FblI GTMKAC 1 cut(s) 679
Fnu4HI GCNGC 2 cut(s) 291, 690
FokI GGATG 1 cut(s) 618
Fsp4HI GCNGC 2 cut(s) 291, 690
FspBI CTAG 1 cut(s) 114
GlaI GCGC 2 cut(s) 119, 435
GluI GCNGC 2 cut(s) 291, 690
GsaI CCCAGC 1 cut(s) 70
GsuI CTGGAG 1 cut(s) 399
HaeII RGCGCY 1 cut(s) 121
HaeIII GGCC 1 cut(s) 245
HapII CCGG 2 cut(s) 52, 163
HhaI GCGC 2 cut(s) 120, 436
Hin1II CATG 3 cut(s) 388, 586, 686
Hin6I GCGC 2 cut(s) 118, 434
HinP1I GCGC 2 cut(s) 118, 434
HinfI GANTC 3 cut(s) 337, 388, 615
HpaII CCGG 2 cut(s) 52, 163
HphI GGTGA 1 cut(s) 49
Hpy166II GTNNAC 2 cut(s) 152, 680
Hpy188I TCNGA 5 cut(s) 16, 88, 159, 223, 742
Hpy188III TCNNGA 7 cut(s) 149, 392, 440, 550, 576, 612, 659
Hpy8I GTNNAC 2 cut(s) 152, 680
Hpy99I CGWCG 1 cut(s) 321
HpyAV CCTTC 2 cut(s) 103, 608
HpyCH4III ACNGT 2 cut(s) 180, 480
HpyCH4IV ACGT 2 cut(s) 319, 418
HpyCH4V TGCA 7 cut(s) 203, 293, 299, 398, 505, 643, 701
HpyF10VI GCNNNNNNNGC 2 cut(s) 296, 698
HpyF3I CTNAG 4 cut(s) 15, 87, 278, 446
HpySE526I ACGT 2 cut(s) 319, 418
Hsp92II CATG 3 cut(s) 388, 586, 686
HspAI GCGC 2 cut(s) 118, 434
KpnI GGTACC 1 cut(s) 308
Kzo9I GATC 4 cut(s) 267, 274, 442, 546
LmnI GCTCC 1 cut(s) 664
Lsp1109I GCAGC 1 cut(s) 277
LweI GCATC 6 cut(s) 67, 212, 385, 445, 596, 676
MaeI CTAG 1 cut(s) 114
MaeII ACGT 2 cut(s) 319, 418
MaeIII GTNAC 4 cut(s) 5, 414, 463, 732
MalI GATC 4 cut(s) 269, 276, 444, 548
MboI GATC 4 cut(s) 267, 274, 442, 546
MboII GAAGA 3 cut(s) 198, 239, 561
MflI RGATCY 3 cut(s) 267, 274, 442
MhlI GDGCHC 1 cut(s) 217
MluCI AATT 5 cut(s) 42, 135, 365, 630, 670
MnlI CCTC 7 cut(s) 22, 82, 142, 374, 497, 620, 655
Mph1103I ATGCAT 1 cut(s) 703
MslI CAYNNNNRTG 1 cut(s) 470
MspA1I CMGCKG 1 cut(s) 66
MspI CCGG 2 cut(s) 52, 163
MspR9I CCNGG 1 cut(s) 378
MvaI CCWGG 1 cut(s) 378
MwoI GCNNNNNNNGC 2 cut(s) 296, 698
NdeII GATC 4 cut(s) 267, 274, 442, 546
NlaIII CATG 3 cut(s) 388, 586, 686
NlaIV GGNNCC 3 cut(s) 71, 125, 306
NmuCI GTSAC 4 cut(s) 5, 414, 463, 732
NsiI ATGCAT 1 cut(s) 703
PaeR7I CTCGAG 1 cut(s) 659
PcsI WCGNNNNNNNCGW 1 cut(s) 145
PfeI GAWTC 3 cut(s) 337, 388, 615
PkrI GCNGC 2 cut(s) 292, 691
Ppu21I YACGTR 1 cut(s) 419
Psp6I CCWGG 1 cut(s) 376
PspFI CCCAGC 1 cut(s) 66
PspGI CCWGG 1 cut(s) 376
PspN4I GGNNCC 3 cut(s) 71, 125, 306
PspPI GGNCC 2 cut(s) 70, 244
PsuI RGATCY 3 cut(s) 267, 274, 442
PvuII CAGCTG 1 cut(s) 66
RsaI GTAC 1 cut(s) 306
RsaNI GTAC 1 cut(s) 305
RseI CAYNNNNRTG 1 cut(s) 470
SatI GCNGC 2 cut(s) 291, 690
Sau3AI GATC 4 cut(s) 267, 274, 442, 546
Sau96I GGNCC 2 cut(s) 70, 244
ScrFI CCNGG 1 cut(s) 378
SduI GDGCHC 1 cut(s) 217
SfaNI GCATC 6 cut(s) 67, 212, 385, 445, 596, 676
SfcI CTRYAG 1 cut(s) 61
Sfr274I CTCGAG 1 cut(s) 659
SinI GGWCC 1 cut(s) 70
SlaI CTCGAG 1 cut(s) 659
SmiMI CAYNNNNRTG 1 cut(s) 470
SmlI CTYRAG 2 cut(s) 232, 659
SmoI CTYRAG 2 cut(s) 232, 659
Sse9I AATT 5 cut(s) 42, 135, 365, 630, 670
SsiI CCGC 2 cut(s) 522, 690
SspMI CTAG 1 cut(s) 114
StyD4I CCNGG 1 cut(s) 376
TaaI ACNGT 2 cut(s) 180, 480
TaiI ACGT 2 cut(s) 322, 421
TaqI TCGA 5 cut(s) 316, 391, 549, 613, 660
TaqII GACCGA 1 cut(s) 87
TasI AATT 5 cut(s) 42, 135, 365, 630, 670
TauI GCSGC 1 cut(s) 692
TfiI GAWTC 3 cut(s) 337, 388, 615
TscAI CASTG 4 cut(s) 185, 458, 483, 625
TseFI GTSAC 4 cut(s) 5, 414, 463, 732
TseI GCWGC 1 cut(s) 290
Tsp45I GTSAC 4 cut(s) 5, 414, 463, 732
TspDTI ATGAA 2 cut(s) 240, 599
TspRI CASTG 4 cut(s) 185, 458, 483, 625
VpaK11BI GGWCC 1 cut(s) 70
XagI CCTNNNNNAGG 1 cut(s) 86
XapI RAATTY 2 cut(s) 630, 670
XhoI CTCGAG 1 cut(s) 659
XmiI GTMKAC 1 cut(s) 679
XspI CTAG 1 cut(s) 114
Zsp2I ATGCAT 1 cut(s) 703
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.