Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0016537

Physical Location & Seq

Genomic Coordinates Reverse (-)

27940047 .. 27940433

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g35410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGCCAAGACAGGGAAGCTGACCAAGCTCAAGTCGGCCATAAAGAGATGGCCCTCCTTCACCAAACTGGCTCGCACCACAAGCTCCATAGCCGCCGCAAACGAAGACTCGTCGTCCGACCAGTACGACAACGACAGGGCAGCAGTGATCTCCAAGCAGCTTCACGCCGTCTACGTGGGGAAGTCGCGGCGGCGGTACATGGTGAGCTCCGACGTGGTGGAGCACCCCATAATTCAAGAGCTGGTGGACAAGTCGTGTGAGGAAGAAGAAGGGGTAGTGGTGGTTTCTTGCGAGGTCGTGCTGTTTGAGCACTTGCTGTGGATGCTTGAGAACGCAGAGACGCAGTTGGGTTCCATGGATGAGCTTGTTGAGTTCTACACTTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001558 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0008150 GO:0016020 GO:0019897 GO:0019898 GO:0030307 GO:0040008 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045927 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_inducible

Protein Analysis

129

Amino Acids

14.42

Weight (kDa)

5.2

Isoelectric Point (pI)

53.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_inducible	PF02519	11 - 109	1.2e-20	Auxin responsive protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0016537)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G72430
fragaria_vesca	FvH4_6g35410
prunus_persica	Prupe.3G035000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0146941
rosa_laevigata	RLG00000020228
rosa_multiflora	Rmu_sc0003317.1_g000007 Rmu_sc0003317.1_g000008
rosa_roxburghii	Rroxscaffold_2G00099840
rosa_rugosa	Rorug02G0397600
rosa_samantha	Rh2AG454100 Rh2BG466800 Rh2CG441200 Rh2DG475700
rosa_wichuraiana	Rw2G037080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	171
AccII	CGCG	1 cut(s)	187
AciI	CCGC	5 cut(s)	93, 96, 187, 190, 193
AcoI	YGGCCR	2 cut(s)	3, 36
AfaI	GTAC	2 cut(s)	125, 197
AfiI	CCNNNNNNNGG	1 cut(s)	12
AgsI	TTSAA	1 cut(s)	236
AhdI	GACNNNNNGTC	1 cut(s)	112
AjiI	CACGTC	1 cut(s)	214
AluBI	AGCT	7 cut(s)	19, 28, 84, 160, 207, 241, 364
AluI	AGCT	7 cut(s)	19, 28, 84, 160, 207, 241, 364
Alw21I	GWGCWC	3 cut(s)	209, 225, 312
Alw26I	GTCTC	1 cut(s)	332
AoxI	GGCC	3 cut(s)	3, 36, 50
ApeKI	GCWGC	2 cut(s)	140, 157
AspS9I	GGNCC	1 cut(s)	51
AsuHPI	GGTGA	2 cut(s)	52, 214
BalI	TGGCCA	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	209
BbsI	GAAGAC	1 cut(s)	111
Bbv12I	GWGCWC	3 cut(s)	209, 225, 312
BbvI	GCAGC	2 cut(s)	152, 169
BccI	CCATC	1 cut(s)	42
BceAI	ACGGC	1 cut(s)	152
BcoDI	GTCTC	1 cut(s)	332
BisI	GCNGC	6 cut(s)	93, 96, 141, 158, 188, 191
BlsI	GCNGC	6 cut(s)	94, 97, 142, 159, 189, 192
BmeRI	GACNNNNNGTC	1 cut(s)	112
BmgBI	CACGTC	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	51
BmiI	GGNNCC	1 cut(s)	352
BmsI	GCATC	1 cut(s)	312
BpiI	GAAGAC	1 cut(s)	111
BpuEI	CTTGAG	2 cut(s)	14, 347
BsaAI	YACGTR	1 cut(s)	175
BsaJI	CCNNGG	1 cut(s)	354
Bsc4I	CCNNNNNNNGG	1 cut(s)	12
Bse1I	ACTGG	2 cut(s)	72, 121
BseDI	CCNNGG	1 cut(s)	354
BseGI	GGATG	2 cut(s)	327, 364
BseLI	CCNNNNNNNGG	1 cut(s)	12
BseNI	ACTGG	2 cut(s)	72, 121
BseXI	GCAGC	2 cut(s)	152, 169
Bsh1236I	CGCG	1 cut(s)	187
BshFI	GGCC	3 cut(s)	5, 38, 52
BsiHKAI	GWGCWC	3 cut(s)	209, 225, 312
BslI	CCNNNNNNNGG	1 cut(s)	12
BsmAI	GTCTC	1 cut(s)	332
BsmBI	CGTCTC	1 cut(s)	332
BsnI	GGCC	3 cut(s)	5, 38, 52
Bsp1286I	GDGCHC	3 cut(s)	209, 225, 312
Bsp143I	GATC	1 cut(s)	147
Bsp19I	CCATGG	1 cut(s)	354
BspACI	CCGC	5 cut(s)	93, 96, 187, 190, 193
BspANI	GGCC	3 cut(s)	5, 38, 52
BspFNI	CGCG	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	352
BsrI	ACTGG	2 cut(s)	72, 121
BssECI	CCNNGG	1 cut(s)	354
BssMI	GATC	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	354
BstBAI	YACGTR	1 cut(s)	175
BstC8I	GCNNGC	1 cut(s)	73
BstDSI	CCRYGG	1 cut(s)	354
BstF5I	GGATG	2 cut(s)	327, 364
BstFNI	CGCG	1 cut(s)	187
BstKTI	GATC	1 cut(s)	150
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	1 cut(s)	147
BstMWI	GCNNNNNNNGC	4 cut(s)	25, 81, 307, 322
BstUI	CGCG	1 cut(s)	187
BstV1I	GCAGC	2 cut(s)	152, 169
BstV2I	GAAGAC	1 cut(s)	111
BsuRI	GGCC	3 cut(s)	5, 38, 52
BtgI	CCRYGG	1 cut(s)	354
BtrI	CACGTC	1 cut(s)	214
BtsCI	GGATG	2 cut(s)	327, 364
BtsI	GCAGTG	1 cut(s)	150
BtsIMutI	CAGTG	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	73
Cfr13I	GGNCC	1 cut(s)	51
CseI	GACGC	1 cut(s)	349
Csp6I	GTAC	2 cut(s)	124, 196
CviAII	CATG	2 cut(s)	199, 355
CviQI	GTAC	2 cut(s)	124, 196
DpnI	GATC	1 cut(s)	149
DpnII	GATC	1 cut(s)	147
DriI	GACNNNNNGTC	1 cut(s)	112
EaeI	YGGCCR	2 cut(s)	3, 36
Eam1105I	GACNNNNNGTC	1 cut(s)	112
Ecl136II	GAGCTC	1 cut(s)	207
Eco130I	CCWWGG	1 cut(s)	354
Eco24I	GRGCYC	1 cut(s)	209
Eco53kI	GAGCTC	1 cut(s)	207
EcoICRI	GAGCTC	1 cut(s)	207
EcoT14I	CCWWGG	1 cut(s)	354
EcoT38I	GRGCYC	1 cut(s)	209
ErhI	CCWWGG	1 cut(s)	354
Esp3I	CGTCTC	1 cut(s)	332
FaeI	CATG	2 cut(s)	202, 358
FaiI	YATR	5 cut(s)	41, 89, 200, 230, 356
FatI	CATG	2 cut(s)	198, 354
FblI	GTMKAC	1 cut(s)	171
Fnu4HI	GCNGC	6 cut(s)	93, 96, 141, 158, 188, 191
FokI	GGATG	2 cut(s)	334, 371
FriOI	GRGCYC	1 cut(s)	209
Fsp4HI	GCNGC	6 cut(s)	93, 96, 141, 158, 188, 191
GluI	GCNGC	6 cut(s)	93, 96, 141, 158, 188, 191
HaeIII	GGCC	3 cut(s)	5, 38, 52
HgaI	GACGC	1 cut(s)	349
Hin1II	CATG	2 cut(s)	202, 358
HinfI	GANTC	1 cut(s)	107
HphI	GGTGA	2 cut(s)	52, 214
Hpy166II	GTNNAC	2 cut(s)	172, 247
Hpy188I	TCNGA	2 cut(s)	118, 211
Hpy188III	TCNNGA	1 cut(s)	236
Hpy8I	GTNNAC	2 cut(s)	172, 247
Hpy99I	CGWCG	2 cut(s)	115, 215
HpyAV	CCTTC	2 cut(s)	67, 263
HpyCH4IV	ACGT	2 cut(s)	174, 213
HpyF10VI	GCNNNNNNNGC	4 cut(s)	25, 81, 307, 322
HpySE526I	ACGT	2 cut(s)	174, 213
Hsp92II	CATG	2 cut(s)	202, 358
Kzo9I	GATC	1 cut(s)	147
LmnI	GCTCC	3 cut(s)	89, 212, 220
LpnPI	CCDG	4 cut(s)	53, 121, 134, 227
Lsp1109I	GCAGC	2 cut(s)	152, 169
LweI	GCATC	1 cut(s)	312
MaeII	ACGT	2 cut(s)	174, 213
MalI	GATC	1 cut(s)	149
MboI	GATC	1 cut(s)	147
MboII	GAAGA	3 cut(s)	116, 275, 278
MhlI	GDGCHC	3 cut(s)	209, 225, 312
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	1 cut(s)	231
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	2 cut(s)	141, 234
MnlI	CCTC	3 cut(s)	64, 253, 286
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MvnI	CGCG	1 cut(s)	187
MwoI	GCNNNNNNNGC	4 cut(s)	25, 81, 307, 322
NcoI	CCATGG	1 cut(s)	354
NdeII	GATC	1 cut(s)	147
NlaIII	CATG	2 cut(s)	202, 358
NlaIV	GGNNCC	1 cut(s)	352
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PkrI	GCNGC	6 cut(s)	94, 97, 142, 159, 189, 192
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
Ppu21I	YACGTR	1 cut(s)	175
Psp124BI	GAGCTC	1 cut(s)	209
PspN4I	GGNNCC	1 cut(s)	352
PspPI	GGNCC	1 cut(s)	51
RsaI	GTAC	2 cut(s)	125, 197
RsaNI	GTAC	2 cut(s)	124, 196
SacI	GAGCTC	1 cut(s)	209
SatI	GCNGC	6 cut(s)	93, 96, 141, 158, 188, 191
Sau3AI	GATC	1 cut(s)	147
Sau96I	GGNCC	1 cut(s)	51
SchI	GAGTC	1 cut(s)	101
SduI	GDGCHC	3 cut(s)	209, 225, 312
SfaNI	GCATC	1 cut(s)	312
SmlI	CTYRAG	2 cut(s)	29, 326
SmoI	CTYRAG	2 cut(s)	29, 326
Sse9I	AATT	1 cut(s)	231
SsiI	CCGC	5 cut(s)	93, 96, 187, 190, 193
SstI	GAGCTC	1 cut(s)	209
StyI	CCWWGG	1 cut(s)	354
TaiI	ACGT	2 cut(s)	177, 216
TasI	AATT	1 cut(s)	231
TauI	GCSGC	4 cut(s)	95, 98, 190, 193
TscAI	CASTG	1 cut(s)	150
TseI	GCWGC	2 cut(s)	140, 157
TspRI	CASTG	1 cut(s)	150
XmiI	GTMKAC	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.