AT1G73120

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015961
Physical Location & Seq
Reverse (-)
27497176 .. 27498062
887 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G73120.1

Sequence Viewer

Length: 330 bp
ATGGCGACTTCTACCTTCTCTTCTCGTGGGGCACAAACCATGAACACCATGTTCGTCAAGCCGATGCTTAGGAAATCAATTCACAAGAAGAGTGCCTCGCATGATATAGTGAGGGATACGGTGAAGACTGAGGGCTCTAGCTCCGGAGAGGAGGTGAAGACGATGAGAGGCTTCTACGGCGCCGGAGAAACGTCGTCGCCGGCGAGTAGTTGGGTGCCACATGAAGGTACGGGAATATACTATCCAAAGGGACAAGAGAAAGTGATGCAAGATGTGCCTCCTCCTCCAGCTGGCAGCCACGCGGACGAGCTCGTTAATTGGTTCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_3

Protein Analysis

109

Amino Acids

11.85

Weight (kDa)

8.04

Isoelectric Point (pI)

39.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73120
fragaria_vesca FvH4_6g27930
malus_domestica MD09G1231600.v1.1
prunus_persica Prupe.3G107800_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0131491
rosa_multiflora Rmu_sc0002230.1_g000021 Rmu_sc0002808.1_g000010 Rmu_sc0027585.1_g000001
rosa_roxburghii Rroxscaffold_2G00112830
rosa_rugosa Rorug02G0297500
rosa_samantha Rh2AG351000 Rh2BG357300 Rh2CG336500 Rh2DG375200
rosa_wichuraiana Rw2G028460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 179, 214
AccII CGCG 1 cut(s) 302
AccIII TCCGGA 1 cut(s) 143
AciI CCGC 1 cut(s) 302
AcyI GRCGYC 1 cut(s) 180
AfaI GTAC 1 cut(s) 229
AfiI CCNNNNNNNGG 2 cut(s) 224, 290
AluBI AGCT 3 cut(s) 141, 290, 310
AluI AGCT 3 cut(s) 141, 290, 310
Alw21I GWGCWC 1 cut(s) 312
Aor13HI TCCGGA 1 cut(s) 143
ApeKI GCWGC 1 cut(s) 294
AspLEI GCGC 1 cut(s) 182
AsuHPI GGTGA 2 cut(s) 133, 166
BaeGI GKGCMC 1 cut(s) 34
BanI GGYRCC 2 cut(s) 179, 214
BanII GRGCYC 2 cut(s) 137, 312
BauI CACGAG 1 cut(s) 24
BbsI GAAGAC 2 cut(s) 131, 164
Bbv12I GWGCWC 1 cut(s) 312
BbvI GCAGC 1 cut(s) 306
BceAI ACGGC 1 cut(s) 193
BciVI GTATCC 1 cut(s) 109
BfaI CTAG 1 cut(s) 138
BfoI RGCGCY 1 cut(s) 183
BfuI GTATCC 1 cut(s) 109
BisI GCNGC 1 cut(s) 295
BlsI GCNGC 1 cut(s) 296
BmiI GGNNCC 2 cut(s) 181, 216
BmsI GCATC 2 cut(s) 54, 255
BpiI GAAGAC 2 cut(s) 131, 164
BpmI CTGGAG 1 cut(s) 270
Bpu10I CCTNAGC 1 cut(s) 68
BsaHI GRCGYC 1 cut(s) 180
BsaWI WCCGGW 1 cut(s) 143
BsaXI ACNNNNNCTCC 2 cut(s) 138, 168
Bsc4I CCNNNNNNNGG 2 cut(s) 224, 290
Bse118I RCCGGY 1 cut(s) 199
BseAI TCCGGA 1 cut(s) 143
BseLI CCNNNNNNNGG 2 cut(s) 224, 290
BseMII CTCAG 1 cut(s) 120
BseRI GAGGAG 3 cut(s) 164, 270, 273
BseSI GKGCMC 1 cut(s) 34
BseXI GCAGC 1 cut(s) 306
Bsh1236I CGCG 1 cut(s) 302
BshNI GGYRCC 2 cut(s) 179, 214
BsiHKAI GWGCWC 1 cut(s) 312
BsiSI CCGG 3 cut(s) 144, 183, 200
BslFI GGGAC 1 cut(s) 264
BslI CCNNNNNNNGG 2 cut(s) 224, 290
BsmFI GGGAC 1 cut(s) 264
Bsp1286I GDGCHC 3 cut(s) 34, 137, 312
Bsp13I TCCGGA 1 cut(s) 143
BspACI CCGC 1 cut(s) 302
BspCNI CTCAG 1 cut(s) 121
BspEI TCCGGA 1 cut(s) 143
BspFNI CGCG 1 cut(s) 302
BspLI GGNNCC 2 cut(s) 181, 216
BspT107I GGYRCC 2 cut(s) 179, 214
BsrFI RCCGGY 1 cut(s) 199
BssAI RCCGGY 1 cut(s) 199
BssNI GRCGYC 1 cut(s) 180
BssSI CACGAG 1 cut(s) 24
Bst2BI CACGAG 1 cut(s) 24
Bst4CI ACNGT 1 cut(s) 121
Bst6I CTCTTC 2 cut(s) 25, 83
BstACI GRCGYC 1 cut(s) 180
BstAPI GCANNNNNTGC 1 cut(s) 274
BstC8I GCNNGC 2 cut(s) 201, 292
BstDEI CTNAG 2 cut(s) 68, 129
BstFNI CGCG 1 cut(s) 302
BstH2I RGCGCY 1 cut(s) 183
BstHHI GCGC 1 cut(s) 182
BstMWI GCNNNNNNNGC 2 cut(s) 177, 274
BstSLI GKGCMC 1 cut(s) 34
BstUI CGCG 1 cut(s) 302
BstV1I GCAGC 1 cut(s) 306
BstV2I GAAGAC 2 cut(s) 131, 164
BsuI GTATCC 1 cut(s) 109
Cac8I GCNNGC 2 cut(s) 201, 292
CfoI GCGC 1 cut(s) 182
Cfr10I RCCGGY 1 cut(s) 199
Csp6I GTAC 1 cut(s) 228
CviAII CATG 4 cut(s) 40, 49, 101, 221
CviJI RGCY 7 cut(s) 61, 135, 141, 171, 290, 297, 310
CviKI_1 RGCY 7 cut(s) 61, 135, 141, 171, 290, 297, 310
CviQI GTAC 1 cut(s) 228
DdeI CTNAG 2 cut(s) 68, 129
DinI GGCGCC 1 cut(s) 181
Eam1104I CTCTTC 2 cut(s) 25, 83
EarI CTCTTC 2 cut(s) 25, 83
Ecl136II GAGCTC 1 cut(s) 310
Eco24I GRGCYC 2 cut(s) 137, 312
Eco53kI GAGCTC 1 cut(s) 310
EcoICRI GAGCTC 1 cut(s) 310
EcoT38I GRGCYC 2 cut(s) 137, 312
EgeI GGCGCC 1 cut(s) 181
EheI GGCGCC 1 cut(s) 181
FaeI CATG 4 cut(s) 43, 52, 104, 224
FaiI YATR 6 cut(s) 41, 50, 102, 107, 222, 238
FaqI GGGAC 1 cut(s) 264
FatI CATG 4 cut(s) 39, 48, 100, 220
Fnu4HI GCNGC 1 cut(s) 295
FriOI GRGCYC 2 cut(s) 137, 312
Fsp4HI GCNGC 1 cut(s) 295
FspBI CTAG 1 cut(s) 138
GlaI GCGC 1 cut(s) 181
GluI GCNGC 1 cut(s) 295
GsuI CTGGAG 1 cut(s) 270
HaeII RGCGCY 1 cut(s) 183
HapII CCGG 3 cut(s) 144, 183, 200
HhaI GCGC 1 cut(s) 182
Hin1I GRCGYC 1 cut(s) 180
Hin1II CATG 4 cut(s) 43, 52, 104, 224
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HpaII CCGG 3 cut(s) 144, 183, 200
HphI GGTGA 2 cut(s) 133, 166
Hpy188III TCNNGA 2 cut(s) 144, 327
Hpy99I CGWCG 2 cut(s) 196, 199
HpyAV CCTTC 2 cut(s) 25, 218
HpyCH4III ACNGT 1 cut(s) 121
HpyCH4IV ACGT 1 cut(s) 191
HpyCH4V TGCA 1 cut(s) 268
HpyF10VI GCNNNNNNNGC 2 cut(s) 177, 274
HpyF3I CTNAG 2 cut(s) 68, 129
HpySE526I ACGT 1 cut(s) 191
Hsp92I GRCGYC 1 cut(s) 180
Hsp92II CATG 4 cut(s) 43, 52, 104, 224
HspAI GCGC 1 cut(s) 180
KasI GGCGCC 1 cut(s) 179
Kpn2I TCCGGA 1 cut(s) 143
KroI GCCGGC 1 cut(s) 199
KroNI GCCGGC 1 cut(s) 201
LmnI GCTCC 1 cut(s) 146
LpnPI CCDG 5 cut(s) 157, 196, 213, 276, 300
Lsp1109I GCAGC 1 cut(s) 306
LweI GCATC 2 cut(s) 54, 255
MaeI CTAG 1 cut(s) 138
MaeII ACGT 1 cut(s) 191
MboII GAAGA 4 cut(s) 12, 100, 136, 169
MhlI GDGCHC 3 cut(s) 34, 137, 312
MluCI AATT 2 cut(s) 78, 316
Mly113I GGCGCC 1 cut(s) 180
MnlI CCTC 9 cut(s) 105, 106, 124, 142, 145, 161, 288, 291, 294
MreI CGCCGGCG 1 cut(s) 199
MroI TCCGGA 1 cut(s) 143
MroNI GCCGGC 1 cut(s) 199
MseI TTAA 1 cut(s) 315
MspA1I CMGCKG 1 cut(s) 290
MspI CCGG 3 cut(s) 144, 183, 200
MvnI CGCG 1 cut(s) 302
MwoI GCNNNNNNNGC 2 cut(s) 177, 274
NaeI GCCGGC 1 cut(s) 201
NarI GGCGCC 1 cut(s) 180
NgoMIV GCCGGC 1 cut(s) 199
NlaIII CATG 4 cut(s) 43, 52, 104, 224
NlaIV GGNNCC 2 cut(s) 181, 216
PcsI WCGNNNNNNNCGW 1 cut(s) 200
PdiI GCCGGC 1 cut(s) 201
PkrI GCNGC 1 cut(s) 296
PluTI GGCGCC 1 cut(s) 183
Psp124BI GAGCTC 1 cut(s) 312
PspN4I GGNNCC 2 cut(s) 181, 216
PvuII CAGCTG 1 cut(s) 290
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
SacI GAGCTC 1 cut(s) 312
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 1 cut(s) 295
SduI GDGCHC 3 cut(s) 34, 137, 312
SetI ASST 7 cut(s) 17, 143, 156, 194, 229, 292, 312
SfaNI GCATC 2 cut(s) 54, 255
SfoI GGCGCC 1 cut(s) 181
SgrAI CRCCGGYG 1 cut(s) 199
Sse9I AATT 2 cut(s) 78, 316
SsiI CCGC 1 cut(s) 302
SspDI GGCGCC 1 cut(s) 179
SspMI CTAG 1 cut(s) 138
SstI GAGCTC 1 cut(s) 312
TaaI ACNGT 1 cut(s) 121
TaiI ACGT 1 cut(s) 194
TasI AATT 2 cut(s) 78, 316
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TseI GCWGC 1 cut(s) 294
TspDTI ATGAA 2 cut(s) 56, 237
XspI CTAG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.