Rmu_sc0027585.1_g000001

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0027585.1
OG0015961
Physical Location & Seq
Reverse (-)
1648 .. 2379
732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0027585.1_g000001.1.cds

Sequence Viewer

Length: 300 bp
atggcaacggtctttgcgagaggagcacagaccatgaacaccatgtttttcaagccggtggggcgaaaagctttccacaagaaaagcacttccgcggatatgataggagaaaccaggaagtttgaaggtgatgaaatgaagaacaagagccatatgggtatgggatcagaaaatgatggcaatatttcctgggttccccatgagaggactgggatttattaccccaaaggccaagagaaagtgatggacaaaatttctccagcagctggcagggatatgggtgtcaattggttcacttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_3

Protein Analysis

99

Amino Acids

11.12

Weight (kDa)

9.52

Isoelectric Point (pI)

21.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73120
fragaria_vesca FvH4_6g27930
malus_domestica MD09G1231600.v1.1
prunus_persica Prupe.3G107800_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0131491
rosa_multiflora Rmu_sc0002230.1_g000021 Rmu_sc0002808.1_g000010 Rmu_sc0027585.1_g000001
rosa_roxburghii Rroxscaffold_2G00112830
rosa_rugosa Rorug02G0297500
rosa_samantha Rh2AG351000 Rh2BG357300 Rh2CG336500 Rh2DG375200
rosa_wichuraiana Rw2G028460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 266
AccII CGCG 1 cut(s) 95
AciI CCGC 2 cut(s) 93, 95
AclWI GGATC 1 cut(s) 172
AcsI RAATTY 1 cut(s) 252
AfiI CCNNNNNNNGG 2 cut(s) 204, 266
AgsI TTSAA 2 cut(s) 52, 125
AjnI CCWGG 2 cut(s) 113, 188
AluBI AGCT 2 cut(s) 71, 266
AluI AGCT 2 cut(s) 71, 266
Alw21I GWGCWC 1 cut(s) 28
AlwI GGATC 1 cut(s) 172
AlwNI CAGNNNCTG 1 cut(s) 266
AoxI GGCC 1 cut(s) 229
ApeKI GCWGC 1 cut(s) 263
ApoI RAATTY 1 cut(s) 252
AsuHPI GGTGA 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 28
BbvI GCAGC 1 cut(s) 275
BccI CCATC 2 cut(s) 170, 238
BciT130I CCWGG 2 cut(s) 115, 190
BglI GCCNNNNNGGC 1 cut(s) 61
BisI GCNGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 265
Bme1390I CCNGG 2 cut(s) 115, 190
BmiI GGNNCC 1 cut(s) 195
BmrFI CCNGG 2 cut(s) 115, 190
BmrI ACTGGG 1 cut(s) 219
BmuI ACTGGG 1 cut(s) 219
BpmI CTGGAG 1 cut(s) 243
BsaJI CCNNGG 2 cut(s) 93, 189
Bsc4I CCNNNNNNNGG 2 cut(s) 204, 266
Bse118I RCCGGY 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 214
BseBI CCWGG 2 cut(s) 115, 190
BseDI CCNNGG 2 cut(s) 93, 189
BseLI CCNNNNNNNGG 2 cut(s) 204, 266
BseNI ACTGG 1 cut(s) 214
BseRI GAGGAG 1 cut(s) 36
BseXI GCAGC 1 cut(s) 275
Bsh1236I CGCG 1 cut(s) 95
BshFI GGCC 1 cut(s) 231
BsiHKAI GWGCWC 1 cut(s) 28
BsiSI CCGG 1 cut(s) 56
BslI CCNNNNNNNGG 2 cut(s) 204, 266
BsnI GGCC 1 cut(s) 231
Bsp1286I GDGCHC 1 cut(s) 28
Bsp143I GATC 1 cut(s) 164
BspACI CCGC 2 cut(s) 93, 95
BspANI GGCC 1 cut(s) 231
BspFNI CGCG 1 cut(s) 95
BspLI GGNNCC 1 cut(s) 195
BspPI GGATC 1 cut(s) 172
BsrFI RCCGGY 1 cut(s) 55
BsrI ACTGG 1 cut(s) 214
BssAI RCCGGY 1 cut(s) 55
BssECI CCNNGG 2 cut(s) 93, 189
BssMI GATC 1 cut(s) 164
Bst2UI CCWGG 2 cut(s) 115, 190
Bst4CI ACNGT 1 cut(s) 10
BstC8I GCNNGC 1 cut(s) 268
BstDSI CCRYGG 1 cut(s) 93
BstFNI CGCG 1 cut(s) 95
BstKTI GATC 1 cut(s) 167
BstMBI GATC 1 cut(s) 164
BstMWI GCNNNNNNNGC 2 cut(s) 23, 61
BstNI CCWGG 2 cut(s) 115, 190
BstSCI CCNGG 2 cut(s) 113, 188
BstUI CGCG 1 cut(s) 95
BstV1I GCAGC 1 cut(s) 275
BsuRI GGCC 1 cut(s) 231
BtgI CCRYGG 1 cut(s) 93
Cac8I GCNNGC 1 cut(s) 268
CaiI CAGNNNCTG 1 cut(s) 266
Cfr10I RCCGGY 1 cut(s) 55
Cfr42I CCGCGG 1 cut(s) 96
CviAII CATG 3 cut(s) 34, 43, 200
CviJI RGCY 5 cut(s) 55, 71, 150, 231, 266
CviKI_1 RGCY 5 cut(s) 55, 71, 150, 231, 266
DpnI GATC 1 cut(s) 166
DpnII GATC 1 cut(s) 164
EcoRII CCWGG 2 cut(s) 113, 188
FaeI CATG 3 cut(s) 37, 46, 203
FaiI YATR 8 cut(s) 35, 44, 101, 153, 155, 161, 201, 278
FatI CATG 3 cut(s) 33, 42, 199
FauNDI CATATG 1 cut(s) 153
Fnu4HI GCNGC 1 cut(s) 264
Fsp4HI GCNGC 1 cut(s) 264
GluI GCNGC 1 cut(s) 264
GsuI CTGGAG 1 cut(s) 243
HaeIII GGCC 1 cut(s) 231
HapII CCGG 1 cut(s) 56
Hin1II CATG 3 cut(s) 37, 46, 203
HindIII AAGCTT 1 cut(s) 69
HpaII CCGG 1 cut(s) 56
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 294
Hpy188I TCNGA 1 cut(s) 169
Hpy8I GTNNAC 1 cut(s) 294
HpyAV CCTTC 1 cut(s) 119
HpyCH4III ACNGT 1 cut(s) 10
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 61
Hsp92II CATG 3 cut(s) 37, 46, 203
KspI CCGCGG 1 cut(s) 96
Kzo9I GATC 1 cut(s) 164
LmnI GCTCC 1 cut(s) 23
LpnPI CCDG 9 cut(s) 69, 100, 127, 175, 195, 202, 252, 256, 273
Lsp1109I GCAGC 1 cut(s) 275
MalI GATC 1 cut(s) 166
MboI GATC 1 cut(s) 164
MboII GAAGA 1 cut(s) 151
MfeI CAATTG 1 cut(s) 286
MhlI GDGCHC 1 cut(s) 28
MluCI AATT 2 cut(s) 252, 286
MnlI CCTC 2 cut(s) 14, 198
MseI TTAA 1 cut(s) 298
MspA1I CMGCKG 2 cut(s) 95, 266
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 2 cut(s) 115, 190
MunI CAATTG 1 cut(s) 286
MvaI CCWGG 2 cut(s) 115, 190
MvnI CGCG 1 cut(s) 95
MwoI GCNNNNNNNGC 2 cut(s) 23, 61
NdeI CATATG 1 cut(s) 153
NdeII GATC 1 cut(s) 164
NlaIII CATG 3 cut(s) 37, 46, 203
NlaIV GGNNCC 1 cut(s) 195
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PflMI CCANNNNNTGG 1 cut(s) 266
PkrI GCNGC 1 cut(s) 265
Psp6I CCWGG 2 cut(s) 113, 188
PspGI CCWGG 2 cut(s) 113, 188
PspN4I GGNNCC 1 cut(s) 195
PstNI CAGNNNCTG 1 cut(s) 266
PvuII CAGCTG 1 cut(s) 266
SacII CCGCGG 1 cut(s) 96
SaqAI TTAA 1 cut(s) 298
SatI GCNGC 1 cut(s) 264
Sau3AI GATC 1 cut(s) 164
ScrFI CCNGG 2 cut(s) 115, 190
SduI GDGCHC 1 cut(s) 28
SetI ASST 3 cut(s) 73, 130, 268
Sfr303I CCGCGG 1 cut(s) 96
SgrBI CCGCGG 1 cut(s) 96
Sse9I AATT 2 cut(s) 252, 286
SsiI CCGC 2 cut(s) 93, 95
SspI AATATT 1 cut(s) 184
StyD4I CCNGG 2 cut(s) 113, 188
TaaI ACNGT 1 cut(s) 10
TasI AATT 2 cut(s) 252, 286
Tru1I TTAA 1 cut(s) 298
Tru9I TTAA 1 cut(s) 298
TseI GCWGC 1 cut(s) 263
TspDTI ATGAA 3 cut(s) 50, 147, 152
Van91I CCANNNNNTGG 1 cut(s) 266
XapI RAATTY 1 cut(s) 252
XcmI CCANNNNNNNNNTGG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.