Rmu_sc0002230.1_g000021

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002230.1
OG0015961
Physical Location & Seq
Reverse (-)
79592 .. 81748
2157 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002230.1_g000021.1.cds

Sequence Viewer

Length: 381 bp
atgggcgatgtgctgggattggtggccgctaggattggtgggctgcaggtttgccggctgggttgctgcagcagcgatgggtgggttgctgttgcaggcggcttagcagacgcggaggggggcagcgcgagtgggccggtggggcgaaaagctttccacaagaaaagcacttccgcggatatgataggagaaaccaggaagtttgaaggtgatgaaatgaagaacaagagccatatgggtatgggatcagaaaatgatggcaatatttcctgggttccccatgagaggactgggatttattaccccaaaggccaagagaaagtgatggacaaaatttctccagcagctggcagggatatgggtgtcaattggttcacttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_3

Protein Analysis

126

Amino Acids

13.28

Weight (kDa)

6.82

Isoelectric Point (pI)

28.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73120
fragaria_vesca FvH4_6g27930
malus_domestica MD09G1231600.v1.1
prunus_persica Prupe.3G107800_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0131491
rosa_multiflora Rmu_sc0002230.1_g000021 Rmu_sc0002808.1_g000010 Rmu_sc0027585.1_g000001
rosa_roxburghii Rroxscaffold_2G00112830
rosa_rugosa Rorug02G0297500
rosa_samantha Rh2AG351000 Rh2BG357300 Rh2CG336500 Rh2DG375200
rosa_wichuraiana Rw2G028460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 37
AccB7I CCANNNNNTGG 1 cut(s) 347
AccII CGCG 3 cut(s) 113, 128, 176
AciI CCGC 5 cut(s) 27, 99, 113, 174, 176
AclWI GGATC 1 cut(s) 253
AcoI YGGCCR 1 cut(s) 24
AcsI RAATTY 1 cut(s) 333
AfiI CCNNNNNNNGG 2 cut(s) 285, 347
AgsI TTSAA 1 cut(s) 206
AjnI CCWGG 2 cut(s) 194, 269
AluBI AGCT 2 cut(s) 152, 347
AluI AGCT 2 cut(s) 152, 347
AlwI GGATC 1 cut(s) 253
AlwNI CAGNNNCTG 1 cut(s) 347
AoxI GGCC 3 cut(s) 24, 134, 310
ApeKI GCWGC 6 cut(s) 43, 66, 69, 72, 123, 344
ApoI RAATTY 1 cut(s) 333
AspLEI GCGC 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 134
AsuHPI GGTGA 1 cut(s) 221
BbvI GCAGC 6 cut(s) 30, 53, 81, 84, 135, 356
BccI CCATC 3 cut(s) 71, 251, 319
BciT130I CCWGG 2 cut(s) 196, 271
BfaI CTAG 1 cut(s) 30
BfmI CTRYAG 2 cut(s) 44, 67
BfuAI ACCTGC 1 cut(s) 37
BglI GCCNNNNNGGC 1 cut(s) 142
BisI GCNGC 8 cut(s) 27, 44, 67, 70, 73, 100, 124, 345
BlpI GCTNAGC 1 cut(s) 103
BlsI GCNGC 8 cut(s) 28, 45, 68, 71, 74, 101, 125, 346
Bme1390I CCNGG 2 cut(s) 196, 271
BmgT120I GGNCC 1 cut(s) 134
BmiI GGNNCC 1 cut(s) 276
BmrFI CCNGG 2 cut(s) 196, 271
BmrI ACTGGG 1 cut(s) 300
BmuI ACTGGG 1 cut(s) 300
BpmI CTGGAG 1 cut(s) 324
Bpu1102I GCTNAGC 1 cut(s) 103
BsaJI CCNNGG 2 cut(s) 174, 270
Bsc4I CCNNNNNNNGG 2 cut(s) 285, 347
Bse118I RCCGGY 2 cut(s) 54, 136
Bse1I ACTGG 1 cut(s) 295
BseBI CCWGG 2 cut(s) 196, 271
BseDI CCNNGG 2 cut(s) 174, 270
BseLI CCNNNNNNNGG 2 cut(s) 285, 347
BseNI ACTGG 1 cut(s) 295
BseXI GCAGC 6 cut(s) 30, 53, 81, 84, 135, 356
BseYI CCCAGC 2 cut(s) 13, 58
Bsh1236I CGCG 3 cut(s) 113, 128, 176
BshFI GGCC 3 cut(s) 26, 136, 312
BsiSI CCGG 2 cut(s) 55, 137
BslI CCNNNNNNNGG 2 cut(s) 285, 347
BsnI GGCC 3 cut(s) 26, 136, 312
Bsp143I GATC 1 cut(s) 245
Bsp1720I GCTNAGC 1 cut(s) 103
BspACI CCGC 5 cut(s) 27, 99, 113, 174, 176
BspANI GGCC 3 cut(s) 26, 136, 312
BspFNI CGCG 3 cut(s) 113, 128, 176
BspLI GGNNCC 1 cut(s) 276
BspMAI CTGCAG 2 cut(s) 48, 71
BspMI ACCTGC 1 cut(s) 37
BspPI GGATC 1 cut(s) 253
BsrFI RCCGGY 2 cut(s) 54, 136
BsrI ACTGG 1 cut(s) 295
BssAI RCCGGY 2 cut(s) 54, 136
BssECI CCNNGG 2 cut(s) 174, 270
BssMI GATC 1 cut(s) 245
Bst2UI CCWGG 2 cut(s) 196, 271
BstC8I GCNNGC 3 cut(s) 56, 97, 349
BstDEI CTNAG 1 cut(s) 103
BstDSI CCRYGG 1 cut(s) 174
BstFNI CGCG 3 cut(s) 113, 128, 176
BstHHI GCGC 1 cut(s) 128
BstKTI GATC 1 cut(s) 248
BstMBI GATC 1 cut(s) 245
BstMWI GCNNNNNNNGC 2 cut(s) 72, 142
BstNI CCWGG 2 cut(s) 196, 271
BstSCI CCNGG 2 cut(s) 194, 269
BstSFI CTRYAG 2 cut(s) 44, 67
BstUI CGCG 3 cut(s) 113, 128, 176
BstV1I GCAGC 6 cut(s) 30, 53, 81, 84, 135, 356
BsuRI GGCC 3 cut(s) 26, 136, 312
BtgI CCRYGG 1 cut(s) 174
BtgZI GCGATG 2 cut(s) 21, 90
BveI ACCTGC 1 cut(s) 37
Cac8I GCNNGC 3 cut(s) 56, 97, 349
CaiI CAGNNNCTG 1 cut(s) 347
CfoI GCGC 1 cut(s) 128
Cfr10I RCCGGY 2 cut(s) 54, 136
Cfr13I GGNCC 1 cut(s) 134
Cfr42I CCGCGG 1 cut(s) 177
CseI GACGC 1 cut(s) 119
CviAII CATG 1 cut(s) 281
CviJI RGCY 9 cut(s) 26, 43, 58, 102, 136, 152, 231, 312, 347
CviKI_1 RGCY 9 cut(s) 26, 43, 58, 102, 136, 152, 231, 312, 347
DdeI CTNAG 1 cut(s) 103
DpnI GATC 1 cut(s) 247
DpnII GATC 1 cut(s) 245
EaeI YGGCCR 1 cut(s) 24
EcoRII CCWGG 2 cut(s) 194, 269
FaeI CATG 1 cut(s) 284
FaiI YATR 6 cut(s) 182, 234, 236, 242, 282, 359
FatI CATG 1 cut(s) 280
FauNDI CATATG 1 cut(s) 234
Fnu4HI GCNGC 8 cut(s) 27, 44, 67, 70, 73, 100, 124, 345
Fsp4HI GCNGC 8 cut(s) 27, 44, 67, 70, 73, 100, 124, 345
FspBI CTAG 1 cut(s) 30
GlaI GCGC 1 cut(s) 127
GluI GCNGC 8 cut(s) 27, 44, 67, 70, 73, 100, 124, 345
GsaI CCCAGC 2 cut(s) 17, 62
GsuI CTGGAG 1 cut(s) 324
HaeIII GGCC 3 cut(s) 26, 136, 312
HapII CCGG 2 cut(s) 55, 137
HgaI GACGC 1 cut(s) 119
HhaI GCGC 1 cut(s) 128
Hin1II CATG 1 cut(s) 284
Hin6I GCGC 1 cut(s) 126
HinP1I GCGC 1 cut(s) 126
HindIII AAGCTT 1 cut(s) 150
HpaII CCGG 2 cut(s) 55, 137
HphI GGTGA 1 cut(s) 221
Hpy166II GTNNAC 1 cut(s) 375
Hpy188I TCNGA 1 cut(s) 250
Hpy8I GTNNAC 1 cut(s) 375
HpyAV CCTTC 1 cut(s) 200
HpyCH4V TGCA 3 cut(s) 46, 69, 95
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 142
HpyF3I CTNAG 1 cut(s) 103
Hsp92II CATG 1 cut(s) 284
HspAI GCGC 1 cut(s) 126
KroI GCCGGC 1 cut(s) 54
KroNI GCCGGC 1 cut(s) 56
KspI CCGCGG 1 cut(s) 177
Kzo9I GATC 1 cut(s) 245
Lsp1109I GCAGC 6 cut(s) 30, 53, 81, 84, 135, 356
MaeI CTAG 1 cut(s) 30
MalI GATC 1 cut(s) 247
MboI GATC 1 cut(s) 245
MboII GAAGA 1 cut(s) 232
MfeI CAATTG 1 cut(s) 367
MluCI AATT 2 cut(s) 333, 367
MnlI CCTC 2 cut(s) 109, 279
MroNI GCCGGC 1 cut(s) 54
MseI TTAA 1 cut(s) 379
MspA1I CMGCKG 2 cut(s) 176, 347
MspI CCGG 2 cut(s) 55, 137
MspR9I CCNGG 2 cut(s) 196, 271
MunI CAATTG 1 cut(s) 367
MvaI CCWGG 2 cut(s) 196, 271
MvnI CGCG 3 cut(s) 113, 128, 176
MwoI GCNNNNNNNGC 2 cut(s) 72, 142
NaeI GCCGGC 1 cut(s) 56
NdeI CATATG 1 cut(s) 234
NdeII GATC 1 cut(s) 245
NgoMIV GCCGGC 1 cut(s) 54
NlaIII CATG 1 cut(s) 284
NlaIV GGNNCC 1 cut(s) 276
PdiI GCCGGC 1 cut(s) 56
PflMI CCANNNNNTGG 1 cut(s) 347
PkrI GCNGC 8 cut(s) 28, 45, 68, 71, 74, 101, 125, 346
Psp6I CCWGG 2 cut(s) 194, 269
PspFI CCCAGC 2 cut(s) 13, 58
PspGI CCWGG 2 cut(s) 194, 269
PspN4I GGNNCC 1 cut(s) 276
PspPI GGNCC 1 cut(s) 134
PstI CTGCAG 2 cut(s) 48, 71
PstNI CAGNNNCTG 1 cut(s) 347
PvuII CAGCTG 1 cut(s) 347
SacII CCGCGG 1 cut(s) 177
SaqAI TTAA 1 cut(s) 379
SatI GCNGC 8 cut(s) 27, 44, 67, 70, 73, 100, 124, 345
Sau3AI GATC 1 cut(s) 245
Sau96I GGNCC 1 cut(s) 134
ScrFI CCNGG 2 cut(s) 196, 271
SetI ASST 4 cut(s) 51, 154, 211, 349
SfcI CTRYAG 2 cut(s) 44, 67
Sfr303I CCGCGG 1 cut(s) 177
SgrBI CCGCGG 1 cut(s) 177
Sse9I AATT 2 cut(s) 333, 367
SsiI CCGC 5 cut(s) 27, 99, 113, 174, 176
SspI AATATT 1 cut(s) 265
SspMI CTAG 1 cut(s) 30
StyD4I CCNGG 2 cut(s) 194, 269
TasI AATT 2 cut(s) 333, 367
TauI GCSGC 2 cut(s) 29, 102
Tru1I TTAA 1 cut(s) 379
Tru9I TTAA 1 cut(s) 379
TseI GCWGC 6 cut(s) 43, 66, 69, 72, 123, 344
TspDTI ATGAA 2 cut(s) 228, 233
Van91I CCANNNNNTGG 1 cut(s) 347
XapI RAATTY 1 cut(s) 333
XcmI CCANNNNNNNNNTGG 1 cut(s) 287
XspI CTAG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.