FvH4_6g27930

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0015961
Physical Location & Seq
Forward (+)
21494869 .. 21495706
838 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g27930.t1

Sequence Viewer

Length: 300 bp
ATGGCAACGGTGTTCGCGAGAGGAGCACAGACCATGAACACCATGTTTTTCAAGCCGGCGGGGCGAAAAGCTTTCCATAAGAAAAGCACTTCGGCGGATATGATACGCGAAACCAGGAAGTTTGAAGGTGATGAAATGAAGAATAAGAGCCATAAGGGAATGGGATCAGAAAATGATGGCAATATTTCCTGGGTTCCCCATGAGAGGACTGGAATATATTACCCCAAAGGCCAAGAGAAAGTGATGAACGAAATTTCTCCAGCTGCTGGCAGGGATATGGGTGTCAATTGGTTCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_3

Protein Analysis

100

Amino Acids

11.19

Weight (kDa)

9.69

Isoelectric Point (pI)

28.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73120
fragaria_vesca FvH4_6g27930
malus_domestica MD09G1231600.v1.1
prunus_persica Prupe.3G107800_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0131491
rosa_multiflora Rmu_sc0002230.1_g000021 Rmu_sc0002808.1_g000010 Rmu_sc0027585.1_g000001
rosa_roxburghii Rroxscaffold_2G00112830
rosa_rugosa Rorug02G0297500
rosa_samantha Rh2AG351000 Rh2BG357300 Rh2CG336500 Rh2DG375200
rosa_wichuraiana Rw2G028460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 266
AccII CGCG 2 cut(s) 17, 108
AciI CCGC 2 cut(s) 59, 95
AclWI GGATC 1 cut(s) 172
AcsI RAATTY 1 cut(s) 252
AfiI CCNNNNNNNGG 2 cut(s) 204, 266
AgsI TTSAA 2 cut(s) 52, 125
AjnI CCWGG 2 cut(s) 113, 188
AluBI AGCT 2 cut(s) 71, 263
AluI AGCT 2 cut(s) 71, 263
Alw21I GWGCWC 1 cut(s) 28
AlwI GGATC 1 cut(s) 172
AlwNI CAGNNNCTG 1 cut(s) 266
AoxI GGCC 1 cut(s) 229
ApeKI GCWGC 1 cut(s) 263
ApoI RAATTY 1 cut(s) 252
AsuHPI GGTGA 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 28
BbvI GCAGC 1 cut(s) 250
BccI CCATC 1 cut(s) 170
BciT130I CCWGG 2 cut(s) 115, 190
BglI GCCNNNNNGGC 1 cut(s) 61
BisI GCNGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 265
Bme1390I CCNGG 2 cut(s) 115, 190
BmiI GGNNCC 1 cut(s) 195
BmrFI CCNGG 2 cut(s) 115, 190
BpmI CTGGAG 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 189
Bsc4I CCNNNNNNNGG 2 cut(s) 204, 266
Bse118I RCCGGY 1 cut(s) 55
Bse1I ACTGG 1 cut(s) 214
BseBI CCWGG 2 cut(s) 115, 190
BseDI CCNNGG 1 cut(s) 189
BseLI CCNNNNNNNGG 2 cut(s) 204, 266
BseNI ACTGG 1 cut(s) 214
BseRI GAGGAG 1 cut(s) 36
BseXI GCAGC 1 cut(s) 250
Bsh1236I CGCG 2 cut(s) 17, 108
BshFI GGCC 1 cut(s) 231
BsiHKAI GWGCWC 1 cut(s) 28
BsiSI CCGG 1 cut(s) 56
BslI CCNNNNNNNGG 2 cut(s) 204, 266
BsnI GGCC 1 cut(s) 231
Bsp1286I GDGCHC 1 cut(s) 28
Bsp143I GATC 1 cut(s) 164
Bsp68I TCGCGA 1 cut(s) 17
BspACI CCGC 2 cut(s) 59, 95
BspANI GGCC 1 cut(s) 231
BspFNI CGCG 2 cut(s) 17, 108
BspLI GGNNCC 1 cut(s) 195
BspPI GGATC 1 cut(s) 172
BsrFI RCCGGY 1 cut(s) 55
BsrI ACTGG 1 cut(s) 214
BssAI RCCGGY 1 cut(s) 55
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 1 cut(s) 164
Bst2UI CCWGG 2 cut(s) 115, 190
Bst4CI ACNGT 1 cut(s) 10
BstC8I GCNNGC 2 cut(s) 57, 268
BstFNI CGCG 2 cut(s) 17, 108
BstKTI GATC 1 cut(s) 167
BstMBI GATC 1 cut(s) 164
BstMWI GCNNNNNNNGC 2 cut(s) 23, 61
BstNI CCWGG 2 cut(s) 115, 190
BstSCI CCNGG 2 cut(s) 113, 188
BstUI CGCG 2 cut(s) 17, 108
BstV1I GCAGC 1 cut(s) 250
BsuRI GGCC 1 cut(s) 231
BtuMI TCGCGA 1 cut(s) 17
Cac8I GCNNGC 2 cut(s) 57, 268
CaiI CAGNNNCTG 1 cut(s) 266
Cfr10I RCCGGY 1 cut(s) 55
CviAII CATG 3 cut(s) 34, 43, 200
CviJI RGCY 5 cut(s) 55, 71, 150, 231, 263
CviKI_1 RGCY 5 cut(s) 55, 71, 150, 231, 263
DpnI GATC 1 cut(s) 166
DpnII GATC 1 cut(s) 164
EciI GGCGGA 1 cut(s) 110
EcoRII CCWGG 2 cut(s) 113, 188
FaeI CATG 3 cut(s) 37, 46, 203
FaiI YATR 8 cut(s) 35, 44, 78, 101, 153, 201, 217, 278
FatI CATG 3 cut(s) 33, 42, 199
FauI CCCGC 1 cut(s) 52
Fnu4HI GCNGC 1 cut(s) 264
Fsp4HI GCNGC 1 cut(s) 264
GluI GCNGC 1 cut(s) 264
GsuI CTGGAG 1 cut(s) 243
HaeIII GGCC 1 cut(s) 231
HapII CCGG 1 cut(s) 56
Hin1II CATG 3 cut(s) 37, 46, 203
HindIII AAGCTT 1 cut(s) 69
HpaII CCGG 1 cut(s) 56
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 294
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 1 cut(s) 16
Hpy8I GTNNAC 1 cut(s) 294
HpyAV CCTTC 1 cut(s) 119
HpyCH4III ACNGT 1 cut(s) 10
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 61
Hsp92II CATG 3 cut(s) 37, 46, 203
KroI GCCGGC 1 cut(s) 55
KroNI GCCGGC 1 cut(s) 57
Kzo9I GATC 1 cut(s) 164
LmnI GCTCC 1 cut(s) 23
LpnPI CCDG 9 cut(s) 69, 100, 127, 175, 195, 202, 252, 256, 273
Lsp1109I GCAGC 1 cut(s) 250
MalI GATC 1 cut(s) 166
MboI GATC 1 cut(s) 164
MboII GAAGA 1 cut(s) 151
MfeI CAATTG 1 cut(s) 286
MhlI GDGCHC 1 cut(s) 28
MluCI AATT 2 cut(s) 252, 286
MnlI CCTC 2 cut(s) 14, 198
MroNI GCCGGC 1 cut(s) 55
MseI TTAA 1 cut(s) 298
MspA1I CMGCKG 1 cut(s) 263
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 2 cut(s) 115, 190
MunI CAATTG 1 cut(s) 286
MvaI CCWGG 2 cut(s) 115, 190
MvnI CGCG 2 cut(s) 17, 108
MwoI GCNNNNNNNGC 2 cut(s) 23, 61
NaeI GCCGGC 1 cut(s) 57
NdeII GATC 1 cut(s) 164
NgoMIV GCCGGC 1 cut(s) 55
NlaIII CATG 3 cut(s) 37, 46, 203
NlaIV GGNNCC 1 cut(s) 195
NruI TCGCGA 1 cut(s) 17
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PdiI GCCGGC 1 cut(s) 57
PflMI CCANNNNNTGG 1 cut(s) 266
PkrI GCNGC 1 cut(s) 265
Psp6I CCWGG 2 cut(s) 113, 188
PspGI CCWGG 2 cut(s) 113, 188
PspN4I GGNNCC 1 cut(s) 195
PstNI CAGNNNCTG 1 cut(s) 266
PvuII CAGCTG 1 cut(s) 263
RruI TCGCGA 1 cut(s) 17
SaqAI TTAA 1 cut(s) 298
SatI GCNGC 1 cut(s) 264
Sau3AI GATC 1 cut(s) 164
ScrFI CCNGG 2 cut(s) 115, 190
SduI GDGCHC 1 cut(s) 28
SetI ASST 3 cut(s) 73, 130, 265
Sse9I AATT 2 cut(s) 252, 286
SsiI CCGC 2 cut(s) 59, 95
SspI AATATT 1 cut(s) 184
StyD4I CCNGG 2 cut(s) 113, 188
TaaI ACNGT 1 cut(s) 10
TasI AATT 2 cut(s) 252, 286
Tru1I TTAA 1 cut(s) 298
Tru9I TTAA 1 cut(s) 298
TseI GCWGC 1 cut(s) 263
TspDTI ATGAA 4 cut(s) 50, 147, 152, 260
Van91I CCANNNNNTGG 1 cut(s) 266
XapI RAATTY 1 cut(s) 252
XcmI CCANNNNNNNNNTGG 1 cut(s) 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.