MD09G1231600.v1.1

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0015961
Physical Location & Seq
Reverse (-)
28697461 .. 28699059
1599 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1231600.v1.1.491

Sequence Viewer

Length: 291 bp
ATGGCTACGGTTTTGGCAAGAGGAGCACAGACCATTAACTCCGTGGTTTTCAAGCCAATGAGTCGAAAAGGTTTTCATAAGCAAAGCTCTTCTGCAGATATGGTACGTGAGACGGTGAAGTCTGAAGGTGATGAAGCGAAGAACAAGAACCAAATGGGAGAAAATAATGATAACAATATATGGGTTCCCCATGAGAAGACTGGAATATATTACCCCAAGGGCCAAGAGAAAGTGTTGGACGAAATTTCTCCAGGATCTGTTAAGGATATGGGTGTCAATTGGTTTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_3

Protein Analysis

97

Amino Acids

10.7

Weight (kDa)

7.99

Isoelectric Point (pI)

39.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LEA_3a PF03242 11 - 80 4.2e-06 Late embryogenesis abundant protein (LEA_3a subfamily)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73120
fragaria_vesca FvH4_6g27930
malus_domestica MD09G1231600.v1.1
prunus_persica Prupe.3G107800_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0131491
rosa_multiflora Rmu_sc0002230.1_g000021 Rmu_sc0002808.1_g000010 Rmu_sc0027585.1_g000001
rosa_roxburghii Rroxscaffold_2G00112830
rosa_rugosa Rorug02G0297500
rosa_samantha Rh2AG351000 Rh2BG357300 Rh2CG336500 Rh2DG375200
rosa_wichuraiana Rw2G028460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 118
AclWI GGATC 1 cut(s) 262
AcsI RAATTY 1 cut(s) 243
AcuI CTGAAG 1 cut(s) 144
AfaI GTAC 1 cut(s) 105
AgsI TTSAA 1 cut(s) 52
AjnI CCWGG 1 cut(s) 250
AluBI AGCT 1 cut(s) 87
AluI AGCT 1 cut(s) 87
Alw21I GWGCWC 1 cut(s) 28
Alw26I GTCTC 1 cut(s) 104
AlwI GGATC 1 cut(s) 262
AlwNI CAGNNNCTG 1 cut(s) 257
AoxI GGCC 1 cut(s) 220
ApoI RAATTY 1 cut(s) 243
AspS9I GGNCC 1 cut(s) 220
AsuHPI GGTGA 2 cut(s) 127, 140
BbsI GAAGAC 1 cut(s) 203
Bbv12I GWGCWC 1 cut(s) 28
BciT130I CCWGG 1 cut(s) 252
BcoDI GTCTC 1 cut(s) 104
BfmI CTRYAG 1 cut(s) 93
Bme1390I CCNGG 1 cut(s) 252
BmgT120I GGNCC 1 cut(s) 220
BmiI GGNNCC 1 cut(s) 186
BmrFI CCNGG 1 cut(s) 252
BpiI GAAGAC 1 cut(s) 203
BpmI CTGGAG 1 cut(s) 234
BsaAI YACGTR 1 cut(s) 107
BsaJI CCNNGG 2 cut(s) 42, 216
Bse1I ACTGG 1 cut(s) 205
BseBI CCWGG 1 cut(s) 252
BseDI CCNNGG 2 cut(s) 42, 216
BseNI ACTGG 1 cut(s) 205
BseRI GAGGAG 1 cut(s) 36
BshFI GGCC 1 cut(s) 222
BsiHKAI GWGCWC 1 cut(s) 28
BsmAI GTCTC 1 cut(s) 104
BsmBI CGTCTC 1 cut(s) 104
BsnI GGCC 1 cut(s) 222
Bsp1286I GDGCHC 1 cut(s) 28
Bsp143I GATC 1 cut(s) 254
BspANI GGCC 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 186
BspMAI CTGCAG 1 cut(s) 97
BspPI GGATC 1 cut(s) 262
BspQI GCTCTTC 1 cut(s) 94
BsrI ACTGG 1 cut(s) 205
BssECI CCNNGG 2 cut(s) 42, 216
BssMI GATC 1 cut(s) 254
BssT1I CCWWGG 1 cut(s) 216
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 2 cut(s) 10, 115
Bst6I CTCTTC 1 cut(s) 94
BstBAI YACGTR 1 cut(s) 107
BstDSI CCRYGG 1 cut(s) 42
BstKTI GATC 1 cut(s) 257
BstMAI GTCTC 1 cut(s) 104
BstMBI GATC 1 cut(s) 254
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstNI CCWGG 1 cut(s) 252
BstSCI CCNGG 1 cut(s) 250
BstSFI CTRYAG 1 cut(s) 93
BstV2I GAAGAC 1 cut(s) 203
BstX2I RGATCY 1 cut(s) 254
BstYI RGATCY 1 cut(s) 254
BsuRI GGCC 1 cut(s) 222
BtgI CCRYGG 1 cut(s) 42
CaiI CAGNNNCTG 1 cut(s) 257
Cfr13I GGNCC 1 cut(s) 220
Csp6I GTAC 1 cut(s) 104
CviAII CATG 1 cut(s) 191
CviJI RGCY 4 cut(s) 5, 55, 87, 222
CviKI_1 RGCY 4 cut(s) 5, 55, 87, 222
CviQI GTAC 1 cut(s) 104
DpnI GATC 1 cut(s) 256
DpnII GATC 1 cut(s) 254
DrdI GACNNNNNNGTC 1 cut(s) 118
DseDI GACNNNNNNGTC 1 cut(s) 118
Eam1104I CTCTTC 1 cut(s) 94
EarI CTCTTC 1 cut(s) 94
Eco130I CCWWGG 1 cut(s) 216
Eco57I CTGAAG 1 cut(s) 144
EcoRII CCWGG 1 cut(s) 250
EcoT14I CCWWGG 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 216
Esp3I CGTCTC 1 cut(s) 104
FaeI CATG 1 cut(s) 194
FaiI YATR 8 cut(s) 78, 101, 179, 181, 192, 208, 269, 289
FatI CATG 1 cut(s) 190
GsuI CTGGAG 1 cut(s) 234
HaeIII GGCC 1 cut(s) 222
Hin1II CATG 1 cut(s) 194
HinfI GANTC 1 cut(s) 61
HphI GGTGA 2 cut(s) 127, 140
Hpy188I TCNGA 1 cut(s) 124
HpyAV CCTTC 1 cut(s) 119
HpyCH4III ACNGT 2 cut(s) 10, 115
HpyCH4IV ACGT 1 cut(s) 106
HpyCH4V TGCA 1 cut(s) 95
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpySE526I ACGT 1 cut(s) 106
Hsp92II CATG 1 cut(s) 194
Kzo9I GATC 1 cut(s) 254
LguI GCTCTTC 1 cut(s) 94
LmnI GCTCC 1 cut(s) 23
LpnPI CCDG 3 cut(s) 186, 237, 264
MaeII ACGT 1 cut(s) 106
MalI GATC 1 cut(s) 256
MboI GATC 1 cut(s) 254
MboII GAAGA 3 cut(s) 81, 151, 208
MfeI CAATTG 1 cut(s) 277
MflI RGATCY 1 cut(s) 254
MhlI GDGCHC 1 cut(s) 28
MluCI AATT 2 cut(s) 243, 277
MlyI GAGTC 1 cut(s) 70
MmeI TCCRAC 1 cut(s) 216
MnlI CCTC 1 cut(s) 14
MseI TTAA 2 cut(s) 36, 261
MspR9I CCNGG 1 cut(s) 252
MunI CAATTG 1 cut(s) 277
MvaI CCWGG 1 cut(s) 252
MwoI GCNNNNNNNGC 1 cut(s) 23
NdeII GATC 1 cut(s) 254
NlaIII CATG 1 cut(s) 194
NlaIV GGNNCC 1 cut(s) 186
PciSI GCTCTTC 1 cut(s) 94
PfoI TCCNGGA 1 cut(s) 250
PleI GAGTC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 69
Ppu21I YACGTR 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 1 cut(s) 186
PspPI GGNCC 1 cut(s) 220
PstI CTGCAG 1 cut(s) 97
PstNI CAGNNNCTG 1 cut(s) 257
PsuI RGATCY 1 cut(s) 254
RsaI GTAC 1 cut(s) 105
RsaNI GTAC 1 cut(s) 104
SapI GCTCTTC 1 cut(s) 94
SaqAI TTAA 2 cut(s) 36, 261
Sau3AI GATC 1 cut(s) 254
Sau96I GGNCC 1 cut(s) 220
SchI GAGTC 1 cut(s) 70
ScrFI CCNGG 1 cut(s) 252
SduI GDGCHC 1 cut(s) 28
SetI ASST 4 cut(s) 73, 89, 109, 130
SfcI CTRYAG 1 cut(s) 93
Sse9I AATT 2 cut(s) 243, 277
StyD4I CCNGG 1 cut(s) 250
StyI CCWWGG 1 cut(s) 216
TaaI ACNGT 2 cut(s) 10, 115
TaiI ACGT 1 cut(s) 109
TaqI TCGA 1 cut(s) 64
TasI AATT 2 cut(s) 243, 277
Tru1I TTAA 2 cut(s) 36, 261
Tru9I TTAA 2 cut(s) 36, 261
TspDTI ATGAA 3 cut(s) 65, 147, 276
TspGWI ACGGA 1 cut(s) 31
XapI RAATTY 1 cut(s) 243
XcmI CCANNNNNNNNNTGG 2 cut(s) 40, 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.