Rw2G028460

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0015961
Physical Location & Seq
Forward (+)
45548015 .. 45548805
791 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G028460.1

Sequence Viewer

Length: 360 bp
ATGAAAGCAGCAAAAATACAAGTGGACTATCCTGGCTTTGAAAAACACAGTGGTAGAGAAATGGCAACGGTCTTTGCGAGAGGAGCACAGACCATGAACACCATGTTTTTCAAGCCGGTGGGGCGAAAAGCTTTCCACAAGAAAAGCACTTCCGCGGATATGATAAGAGAAACCAGGAAGTTTGAAGGTGATGAAATGAAGAACAAGAGCCATATGGGTATGGGATCAGAAAATGATGGCAATATTTCCTGGGTTCCCCATGAGAGGACTGGGATTTATTACCCCAAAGGCCAAGAGAAAGTGATGGACAAAATTTCTCCAGCAGCTGGCAGGGATATGGGTGTCAATTGGTTCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_3

Protein Analysis

119

Amino Acids

13.5

Weight (kDa)

9.65

Isoelectric Point (pI)

18.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73120
fragaria_vesca FvH4_6g27930
malus_domestica MD09G1231600.v1.1
prunus_persica Prupe.3G107800_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0131491
rosa_multiflora Rmu_sc0002230.1_g000021 Rmu_sc0002808.1_g000010 Rmu_sc0027585.1_g000001
rosa_roxburghii Rroxscaffold_2G00112830
rosa_rugosa Rorug02G0297500
rosa_samantha Rh2AG351000 Rh2BG357300 Rh2CG336500 Rh2DG375200
rosa_wichuraiana Rw2G028460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 326
AccII CGCG 1 cut(s) 155
AciI CCGC 2 cut(s) 153, 155
AclWI GGATC 1 cut(s) 232
AcsI RAATTY 1 cut(s) 312
AfiI CCNNNNNNNGG 2 cut(s) 264, 326
AgsI TTSAA 3 cut(s) 41, 112, 185
AjnI CCWGG 3 cut(s) 31, 173, 248
AluBI AGCT 2 cut(s) 131, 326
AluI AGCT 2 cut(s) 131, 326
Alw21I GWGCWC 1 cut(s) 88
AlwI GGATC 1 cut(s) 232
AlwNI CAGNNNCTG 1 cut(s) 326
AoxI GGCC 1 cut(s) 289
ApeKI GCWGC 2 cut(s) 8, 323
ApoI RAATTY 1 cut(s) 312
AsuHPI GGTGA 1 cut(s) 200
Bbv12I GWGCWC 1 cut(s) 88
BbvI GCAGC 2 cut(s) 20, 335
BccI CCATC 2 cut(s) 230, 298
BciT130I CCWGG 3 cut(s) 33, 175, 250
BglI GCCNNNNNGGC 1 cut(s) 121
BisI GCNGC 2 cut(s) 9, 324
BlsI GCNGC 2 cut(s) 10, 325
Bme1390I CCNGG 3 cut(s) 33, 175, 250
BmiI GGNNCC 1 cut(s) 255
BmrFI CCNGG 3 cut(s) 33, 175, 250
BmrI ACTGGG 1 cut(s) 279
BmuI ACTGGG 1 cut(s) 279
BpmI CTGGAG 1 cut(s) 303
BsaJI CCNNGG 2 cut(s) 153, 249
Bsc4I CCNNNNNNNGG 2 cut(s) 264, 326
Bse118I RCCGGY 1 cut(s) 115
Bse1I ACTGG 1 cut(s) 274
BseBI CCWGG 3 cut(s) 33, 175, 250
BseDI CCNNGG 2 cut(s) 153, 249
BseLI CCNNNNNNNGG 2 cut(s) 264, 326
BseNI ACTGG 1 cut(s) 274
BseRI GAGGAG 1 cut(s) 96
BseXI GCAGC 2 cut(s) 20, 335
Bsh1236I CGCG 1 cut(s) 155
BshFI GGCC 1 cut(s) 291
BsiHKAI GWGCWC 1 cut(s) 88
BsiSI CCGG 1 cut(s) 116
BslI CCNNNNNNNGG 2 cut(s) 264, 326
BsnI GGCC 1 cut(s) 291
Bsp1286I GDGCHC 1 cut(s) 88
Bsp143I GATC 1 cut(s) 224
BspACI CCGC 2 cut(s) 153, 155
BspANI GGCC 1 cut(s) 291
BspFNI CGCG 1 cut(s) 155
BspLI GGNNCC 1 cut(s) 255
BspPI GGATC 1 cut(s) 232
BsrFI RCCGGY 1 cut(s) 115
BsrI ACTGG 1 cut(s) 274
BssAI RCCGGY 1 cut(s) 115
BssECI CCNNGG 2 cut(s) 153, 249
BssMI GATC 1 cut(s) 224
Bst2UI CCWGG 3 cut(s) 33, 175, 250
Bst4CI ACNGT 2 cut(s) 50, 70
BstC8I GCNNGC 1 cut(s) 328
BstDSI CCRYGG 1 cut(s) 153
BstFNI CGCG 1 cut(s) 155
BstKTI GATC 1 cut(s) 227
BstMBI GATC 1 cut(s) 224
BstMWI GCNNNNNNNGC 2 cut(s) 83, 121
BstNI CCWGG 3 cut(s) 33, 175, 250
BstSCI CCNGG 3 cut(s) 31, 173, 248
BstUI CGCG 1 cut(s) 155
BstV1I GCAGC 2 cut(s) 20, 335
BsuRI GGCC 1 cut(s) 291
BtgI CCRYGG 1 cut(s) 153
BtsIMutI CAGTG 1 cut(s) 55
Cac8I GCNNGC 1 cut(s) 328
CaiI CAGNNNCTG 1 cut(s) 326
Cfr10I RCCGGY 1 cut(s) 115
Cfr42I CCGCGG 1 cut(s) 156
CviAII CATG 3 cut(s) 94, 103, 260
CviJI RGCY 6 cut(s) 36, 115, 131, 210, 291, 326
CviKI_1 RGCY 6 cut(s) 36, 115, 131, 210, 291, 326
DpnI GATC 1 cut(s) 226
DpnII GATC 1 cut(s) 224
EcoRII CCWGG 3 cut(s) 31, 173, 248
FaeI CATG 3 cut(s) 97, 106, 263
FaiI YATR 8 cut(s) 95, 104, 161, 213, 215, 221, 261, 338
FatI CATG 3 cut(s) 93, 102, 259
FauNDI CATATG 1 cut(s) 213
Fnu4HI GCNGC 2 cut(s) 9, 324
Fsp4HI GCNGC 2 cut(s) 9, 324
GluI GCNGC 2 cut(s) 9, 324
GsuI CTGGAG 1 cut(s) 303
HaeIII GGCC 1 cut(s) 291
HapII CCGG 1 cut(s) 116
Hin1II CATG 3 cut(s) 97, 106, 263
HindIII AAGCTT 1 cut(s) 129
HpaII CCGG 1 cut(s) 116
HphI GGTGA 1 cut(s) 200
Hpy166II GTNNAC 2 cut(s) 25, 354
Hpy188I TCNGA 1 cut(s) 229
Hpy8I GTNNAC 2 cut(s) 25, 354
HpyAV CCTTC 1 cut(s) 179
HpyCH4III ACNGT 2 cut(s) 50, 70
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 121
Hsp92II CATG 3 cut(s) 97, 106, 263
KspI CCGCGG 1 cut(s) 156
Kzo9I GATC 1 cut(s) 224
LmnI GCTCC 1 cut(s) 83
Lsp1109I GCAGC 2 cut(s) 20, 335
MalI GATC 1 cut(s) 226
MboI GATC 1 cut(s) 224
MboII GAAGA 1 cut(s) 211
MfeI CAATTG 1 cut(s) 346
MhlI GDGCHC 1 cut(s) 88
MluCI AATT 2 cut(s) 312, 346
MnlI CCTC 2 cut(s) 74, 258
MseI TTAA 1 cut(s) 358
MspA1I CMGCKG 2 cut(s) 155, 326
MspI CCGG 1 cut(s) 116
MspR9I CCNGG 3 cut(s) 33, 175, 250
MunI CAATTG 1 cut(s) 346
MvaI CCWGG 3 cut(s) 33, 175, 250
MvnI CGCG 1 cut(s) 155
MwoI GCNNNNNNNGC 2 cut(s) 83, 121
NdeI CATATG 1 cut(s) 213
NdeII GATC 1 cut(s) 224
NlaIII CATG 3 cut(s) 97, 106, 263
NlaIV GGNNCC 1 cut(s) 255
PcsI WCGNNNNNNNCGW 1 cut(s) 74
PflMI CCANNNNNTGG 1 cut(s) 326
PkrI GCNGC 2 cut(s) 10, 325
Psp6I CCWGG 3 cut(s) 31, 173, 248
PspGI CCWGG 3 cut(s) 31, 173, 248
PspN4I GGNNCC 1 cut(s) 255
PstNI CAGNNNCTG 1 cut(s) 326
PvuII CAGCTG 1 cut(s) 326
SacII CCGCGG 1 cut(s) 156
SaqAI TTAA 1 cut(s) 358
SatI GCNGC 2 cut(s) 9, 324
Sau3AI GATC 1 cut(s) 224
ScrFI CCNGG 3 cut(s) 33, 175, 250
SduI GDGCHC 1 cut(s) 88
SetI ASST 3 cut(s) 133, 190, 328
Sfr303I CCGCGG 1 cut(s) 156
SgrBI CCGCGG 1 cut(s) 156
Sse9I AATT 2 cut(s) 312, 346
SsiI CCGC 2 cut(s) 153, 155
SspI AATATT 1 cut(s) 244
StyD4I CCNGG 3 cut(s) 31, 173, 248
TaaI ACNGT 2 cut(s) 50, 70
TasI AATT 2 cut(s) 312, 346
Tru1I TTAA 1 cut(s) 358
Tru9I TTAA 1 cut(s) 358
TscAI CASTG 1 cut(s) 55
TseI GCWGC 2 cut(s) 8, 323
TspDTI ATGAA 4 cut(s) 17, 110, 207, 212
TspRI CASTG 1 cut(s) 55
Van91I CCANNNNNTGG 1 cut(s) 326
XapI RAATTY 1 cut(s) 312
XcmI CCANNNNNNNNNTGG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.