RchiOBHm_Chr2g0131491

Late embryogenesis abundant protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0015961
Physical Location & Seq
Forward (+)
47743956 .. 47744210
255 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50283

Sequence Viewer

Length: 255 bp
ATGTGCAGGCCGGTGGGGCGAAAAGCTTTCCACAAGAAAAGCACTTCCGCGGATATGATAAGAGAAACCAGGAAGTTTGAAGGTGATGAAATGAAGAACAAGAGCCATATGGGTATGGGATCAGAAAATGATGGCAATATTTCCTGGGTTCCCCATGAGAGGACTGGGATTTATTACCCCAAAGGCCAAGAGAAAGTGATGGACGAAATTTCTCCAGCAGCTGGCAGGGATATGGGTGTCAATTGGTTCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LEA_3

Protein Analysis

84

Amino Acids

9.58

Weight (kDa)

8.82

Isoelectric Point (pI)

35.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015961)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73120
fragaria_vesca FvH4_6g27930
malus_domestica MD09G1231600.v1.1
prunus_persica Prupe.3G107800_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0131491
rosa_multiflora Rmu_sc0002230.1_g000021 Rmu_sc0002808.1_g000010 Rmu_sc0027585.1_g000001
rosa_roxburghii Rroxscaffold_2G00112830
rosa_rugosa Rorug02G0297500
rosa_samantha Rh2AG351000 Rh2BG357300 Rh2CG336500 Rh2DG375200
rosa_wichuraiana Rw2G028460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 221
AccII CGCG 1 cut(s) 50
AciI CCGC 2 cut(s) 48, 50
AclWI GGATC 1 cut(s) 127
AcsI RAATTY 1 cut(s) 207
AfiI CCNNNNNNNGG 2 cut(s) 159, 221
AgsI TTSAA 1 cut(s) 80
AjnI CCWGG 2 cut(s) 68, 143
AluBI AGCT 2 cut(s) 26, 221
AluI AGCT 2 cut(s) 26, 221
AlwI GGATC 1 cut(s) 127
AlwNI CAGNNNCTG 1 cut(s) 221
AoxI GGCC 2 cut(s) 8, 184
ApeKI GCWGC 1 cut(s) 218
ApoI RAATTY 1 cut(s) 207
AsuHPI GGTGA 1 cut(s) 95
BbvI GCAGC 1 cut(s) 230
BccI CCATC 2 cut(s) 125, 193
BciT130I CCWGG 2 cut(s) 70, 145
BglI GCCNNNNNGGC 1 cut(s) 16
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
Bme1390I CCNGG 2 cut(s) 70, 145
BmiI GGNNCC 1 cut(s) 150
BmrFI CCNGG 2 cut(s) 70, 145
BmrI ACTGGG 1 cut(s) 174
BmuI ACTGGG 1 cut(s) 174
BpmI CTGGAG 1 cut(s) 198
BsaJI CCNNGG 2 cut(s) 48, 144
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 221
Bse118I RCCGGY 1 cut(s) 10
Bse1I ACTGG 1 cut(s) 169
BseBI CCWGG 2 cut(s) 70, 145
BseDI CCNNGG 2 cut(s) 48, 144
BseLI CCNNNNNNNGG 2 cut(s) 159, 221
BseNI ACTGG 1 cut(s) 169
BseXI GCAGC 1 cut(s) 230
BsgI GTGCAG 1 cut(s) 25
Bsh1236I CGCG 1 cut(s) 50
BshFI GGCC 2 cut(s) 10, 186
BsiSI CCGG 1 cut(s) 11
BslI CCNNNNNNNGG 2 cut(s) 159, 221
BsnI GGCC 2 cut(s) 10, 186
Bsp143I GATC 1 cut(s) 119
BspACI CCGC 2 cut(s) 48, 50
BspANI GGCC 2 cut(s) 10, 186
BspFNI CGCG 1 cut(s) 50
BspLI GGNNCC 1 cut(s) 150
BspPI GGATC 1 cut(s) 127
BsrFI RCCGGY 1 cut(s) 10
BsrI ACTGG 1 cut(s) 169
BssAI RCCGGY 1 cut(s) 10
BssECI CCNNGG 2 cut(s) 48, 144
BssMI GATC 1 cut(s) 119
Bst2UI CCWGG 2 cut(s) 70, 145
BstC8I GCNNGC 2 cut(s) 8, 223
BstDSI CCRYGG 1 cut(s) 48
BstFNI CGCG 1 cut(s) 50
BstKTI GATC 1 cut(s) 122
BstMBI GATC 1 cut(s) 119
BstMWI GCNNNNNNNGC 1 cut(s) 16
BstNI CCWGG 2 cut(s) 70, 145
BstSCI CCNGG 2 cut(s) 68, 143
BstUI CGCG 1 cut(s) 50
BstV1I GCAGC 1 cut(s) 230
BsuRI GGCC 2 cut(s) 10, 186
BtgI CCRYGG 1 cut(s) 48
Cac8I GCNNGC 2 cut(s) 8, 223
CaiI CAGNNNCTG 1 cut(s) 221
Cfr10I RCCGGY 1 cut(s) 10
Cfr42I CCGCGG 1 cut(s) 51
CviAII CATG 1 cut(s) 155
CviJI RGCY 5 cut(s) 10, 26, 105, 186, 221
CviKI_1 RGCY 5 cut(s) 10, 26, 105, 186, 221
DpnI GATC 1 cut(s) 121
DpnII GATC 1 cut(s) 119
EcoRII CCWGG 2 cut(s) 68, 143
FaeI CATG 1 cut(s) 158
FaiI YATR 6 cut(s) 56, 108, 110, 116, 156, 233
FatI CATG 1 cut(s) 154
FauNDI CATATG 1 cut(s) 108
Fnu4HI GCNGC 1 cut(s) 219
Fsp4HI GCNGC 1 cut(s) 219
GluI GCNGC 1 cut(s) 219
GsuI CTGGAG 1 cut(s) 198
HaeIII GGCC 2 cut(s) 10, 186
HapII CCGG 1 cut(s) 11
Hin1II CATG 1 cut(s) 158
HindIII AAGCTT 1 cut(s) 24
HpaII CCGG 1 cut(s) 11
HphI GGTGA 1 cut(s) 95
Hpy166II GTNNAC 1 cut(s) 249
Hpy188I TCNGA 1 cut(s) 124
Hpy8I GTNNAC 1 cut(s) 249
HpyAV CCTTC 1 cut(s) 74
HpyCH4V TGCA 1 cut(s) 6
HpyF10VI GCNNNNNNNGC 1 cut(s) 16
Hsp92II CATG 1 cut(s) 158
KspI CCGCGG 1 cut(s) 51
Kzo9I GATC 1 cut(s) 119
LpnPI CCDG 9 cut(s) 24, 55, 82, 130, 150, 157, 207, 211, 228
Lsp1109I GCAGC 1 cut(s) 230
MalI GATC 1 cut(s) 121
MboI GATC 1 cut(s) 119
MboII GAAGA 1 cut(s) 106
MfeI CAATTG 1 cut(s) 241
MluCI AATT 2 cut(s) 207, 241
MnlI CCTC 1 cut(s) 153
MseI TTAA 1 cut(s) 253
MspA1I CMGCKG 2 cut(s) 50, 221
MspI CCGG 1 cut(s) 11
MspR9I CCNGG 2 cut(s) 70, 145
MunI CAATTG 1 cut(s) 241
MvaI CCWGG 2 cut(s) 70, 145
MvnI CGCG 1 cut(s) 50
MwoI GCNNNNNNNGC 1 cut(s) 16
NdeI CATATG 1 cut(s) 108
NdeII GATC 1 cut(s) 119
NlaIII CATG 1 cut(s) 158
NlaIV GGNNCC 1 cut(s) 150
PflMI CCANNNNNTGG 1 cut(s) 221
PkrI GCNGC 1 cut(s) 220
Psp6I CCWGG 2 cut(s) 68, 143
PspGI CCWGG 2 cut(s) 68, 143
PspN4I GGNNCC 1 cut(s) 150
PstNI CAGNNNCTG 1 cut(s) 221
PvuII CAGCTG 1 cut(s) 221
SacII CCGCGG 1 cut(s) 51
SaqAI TTAA 1 cut(s) 253
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 1 cut(s) 119
ScrFI CCNGG 2 cut(s) 70, 145
SetI ASST 3 cut(s) 28, 85, 223
Sfr303I CCGCGG 1 cut(s) 51
SgrBI CCGCGG 1 cut(s) 51
Sse9I AATT 2 cut(s) 207, 241
SsiI CCGC 2 cut(s) 48, 50
SspI AATATT 1 cut(s) 139
StyD4I CCNGG 2 cut(s) 68, 143
TasI AATT 2 cut(s) 207, 241
Tru1I TTAA 1 cut(s) 253
Tru9I TTAA 1 cut(s) 253
TseI GCWGC 1 cut(s) 218
TspDTI ATGAA 2 cut(s) 102, 107
Van91I CCANNNNNTGG 1 cut(s) 221
XapI RAATTY 1 cut(s) 207
XcmI CCANNNNNNNNNTGG 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.