AT1G73890

Probable lipid transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016222
Physical Location & Seq
Reverse (-)
27787903 .. 27788658
756 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G73890.1

Sequence Viewer

Length: 582 bp
ATGGCTTCTTCTACTCTTCTCATCACTCTTTTAATCTCCTTATCAGCATTCTTTCTCCGAATGGTTCTCGCTCAAGTACCAGCTACATGTGCCTCCAGACTGCTTTCCTTAGCTCCATGTGGTCCATTCGTTCAAGGCTTTGCCCAACTTCCGGCTCAGCCATGTTGTGACAGCTTAAACCAGATCTATAGCCAAGAAGCAACCTGTCTCTGTCTCTTCCTCAACAACACCTCTACTTTGTCCCCTGCTTTTCCAATTAATCAAACTCTTGCTCTACAATTGCCTCCGCTTTGCAACATTCCAGCCAATTCATCCACTTGCTCCTCCTCCTTCCCTGGAGAGGCGCCTAGTGATTCCTCCTCTGTTGCTCCACCACCTTCAAGCTCAACTGGTTCTCAAATCTCTCAAGGTGCAAAGAACAACTCTCGTGTCGCTGCTACTCCAGTGGCTCAAATGGCACCAAGACCCACCAGTTTTATGGGATTAGGTTATGGTTTGAAATCCTCTGGCTCCAAGTCTGAGATTCAGCTAACCATCTTTGCACTCGCAGCGATCTTACCCGCCGCTCTCCTCCTCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

193

Amino Acids

19.88

Weight (kDa)

8.15

Isoelectric Point (pI)

59.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 25 - 107 5.4e-14 Probable lipid transfer
Tryp_alpha_amyl PF00234 30 - 107 1.6e-08 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016222)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73890
fragaria_vesca FvH4_5g12310
malus_domestica MD06G1215100.v1.1 MD14G1225900.v1.1
prunus_persica Prupe.5G220400_v2.0.a1
pyrus_communis pycom06g19170
rosa_chinensis RchiOBHm_Chr7g0185251
rosa_laevigata RLG00000004927
rosa_roxburghii Rroxscaffold_3G00269110
rosa_rugosa Rorug06G0467300
rosa_samantha Rh7AG075500 Rh7BG071800 Rh7CG073000 Rh7DG072400
rosa_wichuraiana Rw7G006020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 343, 457
AccBSI CCGCTC 1 cut(s) 566
AciI CCGC 3 cut(s) 287, 561, 564
AcyI GRCGYC 1 cut(s) 344
AfaI GTAC 1 cut(s) 78
AfiI CCNNNNNNNGG 2 cut(s) 151, 340
AflIII ACRYGT 1 cut(s) 86
AgsI TTSAA 3 cut(s) 134, 381, 499
AjnI CCWGG 1 cut(s) 334
AluBI AGCT 5 cut(s) 83, 113, 174, 384, 529
AluI AGCT 5 cut(s) 83, 113, 174, 384, 529
Alw26I GTCTC 2 cut(s) 212, 218
ApeKI GCWGC 2 cut(s) 434, 548
AseI ATTAAT 1 cut(s) 258
AspLEI GCGC 1 cut(s) 346
AspS9I GGNCC 1 cut(s) 122
AvaII GGWCC 1 cut(s) 122
BanI GGYRCC 2 cut(s) 343, 457
BauI CACGAG 1 cut(s) 426
BbvI GCAGC 2 cut(s) 421, 560
BccI CCATC 1 cut(s) 542
BciT130I CCWGG 1 cut(s) 336
BcoDI GTCTC 2 cut(s) 212, 218
BfaI CTAG 1 cut(s) 348
BfmI CTRYAG 1 cut(s) 187
BfoI RGCGCY 1 cut(s) 347
BglII AGATCT 1 cut(s) 183
BisI GCNGC 3 cut(s) 435, 549, 564
BlpI GCTNAGC 1 cut(s) 156
BlsI GCNGC 3 cut(s) 436, 550, 565
Bme1390I CCNGG 1 cut(s) 336
Bme18I GGWCC 1 cut(s) 122
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 3 cut(s) 345, 459, 511
BmrFI CCNGG 1 cut(s) 336
BpmI CTGGAG 3 cut(s) 79, 357, 426
Bpu10I CCTNAGC 1 cut(s) 109
Bpu1102I GCTNAGC 1 cut(s) 156
BpuEI CTTGAG 2 cut(s) 57, 390
BsaHI GRCGYC 1 cut(s) 344
BsaJI CCNNGG 1 cut(s) 334
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 340
Bse1I ACTGG 3 cut(s) 394, 443, 471
BseBI CCWGG 1 cut(s) 336
BseDI CCNNGG 1 cut(s) 334
BseGI GGATG 1 cut(s) 311
BseLI CCNNNNNNNGG 2 cut(s) 151, 340
BseMII CTCAG 2 cut(s) 170, 510
BseNI ACTGG 3 cut(s) 394, 443, 471
BseRI GAGGAG 5 cut(s) 313, 316, 349, 560, 563
BseXI GCAGC 2 cut(s) 421, 560
BshNI GGYRCC 2 cut(s) 343, 457
BsiSI CCGG 1 cut(s) 152
BslFI GGGAC 1 cut(s) 226
BslI CCNNNNNNNGG 2 cut(s) 151, 340
BsmAI GTCTC 2 cut(s) 212, 218
BsmFI GGGAC 1 cut(s) 226
BsmI GAATGC 1 cut(s) 47
Bsp143I GATC 2 cut(s) 183, 552
Bsp1720I GCTNAGC 1 cut(s) 156
BspACI CCGC 3 cut(s) 287, 561, 564
BspCNI CTCAG 2 cut(s) 169, 511
BspLI GGNNCC 3 cut(s) 345, 459, 511
BspT107I GGYRCC 2 cut(s) 343, 457
BsrBI CCGCTC 1 cut(s) 566
BsrI ACTGG 3 cut(s) 394, 443, 471
BssECI CCNNGG 1 cut(s) 334
BssMI GATC 2 cut(s) 183, 552
BssNI GRCGYC 1 cut(s) 344
BssSI CACGAG 1 cut(s) 426
Bst2BI CACGAG 1 cut(s) 426
Bst2UI CCWGG 1 cut(s) 336
Bst6I CTCTTC 2 cut(s) 21, 221
BstACI GRCGYC 1 cut(s) 344
BstDEI CTNAG 3 cut(s) 109, 156, 519
BstF5I GGATG 1 cut(s) 311
BstH2I RGCGCY 1 cut(s) 347
BstHHI GCGC 1 cut(s) 346
BstKTI GATC 2 cut(s) 186, 555
BstMAI GTCTC 2 cut(s) 212, 218
BstMBI GATC 2 cut(s) 183, 552
BstMWI GCNNNNNNNGC 3 cut(s) 89, 455, 548
BstNI CCWGG 1 cut(s) 336
BstNSI RCATGY 1 cut(s) 90
BstSCI CCNGG 1 cut(s) 334
BstSFI CTRYAG 1 cut(s) 187
BstV1I GCAGC 2 cut(s) 421, 560
BstX2I RGATCY 1 cut(s) 183
BstXI CCANNNNNNTGG 1 cut(s) 478
BstYI RGATCY 1 cut(s) 183
BtsCI GGATG 1 cut(s) 311
BtsIMutI CAGTG 1 cut(s) 450
CfoI GCGC 1 cut(s) 346
Cfr13I GGNCC 1 cut(s) 122
Csp6I GTAC 1 cut(s) 77
CviAII CATG 3 cut(s) 87, 117, 162
CviQI GTAC 1 cut(s) 77
DdeI CTNAG 3 cut(s) 109, 156, 519
DinI GGCGCC 1 cut(s) 345
DpnI GATC 2 cut(s) 185, 554
DpnII GATC 2 cut(s) 183, 552
Eam1104I CTCTTC 2 cut(s) 21, 221
EarI CTCTTC 2 cut(s) 21, 221
Eco47I GGWCC 1 cut(s) 122
EcoRII CCWGG 1 cut(s) 334
EgeI GGCGCC 1 cut(s) 345
EheI GGCGCC 1 cut(s) 345
FaeI CATG 3 cut(s) 90, 120, 165
FaiI YATR 6 cut(s) 88, 118, 163, 189, 479, 492
FaqI GGGAC 1 cut(s) 226
FatI CATG 3 cut(s) 86, 116, 161
FauI CCCGC 1 cut(s) 568
Fnu4HI GCNGC 3 cut(s) 435, 549, 564
FokI GGATG 1 cut(s) 298
Fsp4HI GCNGC 3 cut(s) 435, 549, 564
FspBI CTAG 1 cut(s) 348
GlaI GCGC 1 cut(s) 345
GluI GCNGC 3 cut(s) 435, 549, 564
GsuI CTGGAG 3 cut(s) 79, 357, 426
HaeII RGCGCY 1 cut(s) 347
HapII CCGG 1 cut(s) 152
HhaI GCGC 1 cut(s) 346
Hin1I GRCGYC 1 cut(s) 344
Hin1II CATG 3 cut(s) 90, 120, 165
Hin6I GCGC 1 cut(s) 344
HinP1I GCGC 1 cut(s) 344
HinfI GANTC 2 cut(s) 353, 523
HpaII CCGG 1 cut(s) 152
Hpy188I TCNGA 3 cut(s) 59, 520, 581
Hpy188III TCNNGA 1 cut(s) 96
HpyAV CCTTC 2 cut(s) 340, 387
HpyCH4V TGCA 3 cut(s) 294, 413, 542
HpyF10VI GCNNNNNNNGC 3 cut(s) 89, 455, 548
HpyF3I CTNAG 3 cut(s) 109, 156, 519
Hsp92I GRCGYC 1 cut(s) 344
Hsp92II CATG 3 cut(s) 90, 120, 165
HspAI GCGC 1 cut(s) 344
KasI GGCGCC 1 cut(s) 343
Kzo9I GATC 2 cut(s) 183, 552
LmnI GCTCC 4 cut(s) 118, 326, 373, 515
Lsp1109I GCAGC 2 cut(s) 421, 560
MaeI CTAG 1 cut(s) 348
MaeIII GTNAC 1 cut(s) 167
MalI GATC 2 cut(s) 185, 554
MbiI CCGCTC 1 cut(s) 566
MboI GATC 2 cut(s) 183, 552
MboII GAAGA 2 cut(s) 8, 208
MfeI CAATTG 1 cut(s) 278
MflI RGATCY 1 cut(s) 183
MluCI AATT 3 cut(s) 255, 278, 307
Mly113I GGCGCC 1 cut(s) 344
MseI TTAA 3 cut(s) 32, 176, 258
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 1 cut(s) 336
MunI CAATTG 1 cut(s) 278
Mva1269I GAATGC 1 cut(s) 47
MvaI CCWGG 1 cut(s) 336
MwoI GCNNNNNNNGC 3 cut(s) 89, 455, 548
NarI GGCGCC 1 cut(s) 344
NdeII GATC 2 cut(s) 183, 552
NlaIII CATG 3 cut(s) 90, 120, 165
NlaIV GGNNCC 3 cut(s) 345, 459, 511
NmuCI GTSAC 1 cut(s) 167
NspI RCATGY 1 cut(s) 90
PciI ACATGT 1 cut(s) 86
PctI GAATGC 1 cut(s) 47
PfeI GAWTC 2 cut(s) 353, 523
PkrI GCNGC 3 cut(s) 436, 550, 565
PluTI GGCGCC 1 cut(s) 347
PscI ACATGT 1 cut(s) 86
PshBI ATTAAT 1 cut(s) 258
Psp6I CCWGG 1 cut(s) 334
PspGI CCWGG 1 cut(s) 334
PspN4I GGNNCC 3 cut(s) 345, 459, 511
PspPI GGNCC 1 cut(s) 122
PsuI RGATCY 1 cut(s) 183
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
SaqAI TTAA 3 cut(s) 32, 176, 258
SatI GCNGC 3 cut(s) 435, 549, 564
Sau3AI GATC 2 cut(s) 183, 552
Sau96I GGNCC 1 cut(s) 122
ScrFI CCNGG 1 cut(s) 336
SfcI CTRYAG 1 cut(s) 187
SfoI GGCGCC 1 cut(s) 345
SinI GGWCC 1 cut(s) 122
SmlI CTYRAG 2 cut(s) 72, 405
SmoI CTYRAG 2 cut(s) 72, 405
Sse9I AATT 3 cut(s) 255, 278, 307
SsiI CCGC 3 cut(s) 287, 561, 564
SspDI GGCGCC 1 cut(s) 343
SspMI CTAG 1 cut(s) 348
StyD4I CCNGG 1 cut(s) 334
TasI AATT 3 cut(s) 255, 278, 307
TauI GCSGC 1 cut(s) 566
TfiI GAWTC 2 cut(s) 353, 523
Tru1I TTAA 3 cut(s) 32, 176, 258
Tru9I TTAA 3 cut(s) 32, 176, 258
TscAI CASTG 1 cut(s) 450
TseFI GTSAC 1 cut(s) 167
TseI GCWGC 2 cut(s) 434, 548
Tsp45I GTSAC 1 cut(s) 167
TspDTI ATGAA 1 cut(s) 300
TspRI CASTG 1 cut(s) 450
VpaK11BI GGWCC 1 cut(s) 122
VspI ATTAAT 1 cut(s) 258
XceI RCATGY 1 cut(s) 90
XcmI CCANNNNNNNNNTGG 1 cut(s) 475
XspI CTAG 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.