FvH4_5g12310

Probable lipid transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0016222
Physical Location & Seq
Reverse (-)
6916238 .. 6917389
1152 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g12310.t1

Sequence Viewer

Length: 567 bp
ATGGCTTCCCTTCCTCTTGACATATCCTCTCTGACTCTGCTCTTTCTCATTTCCATGTTTCCATCATCCACCCTTTCGCAAAACCCCAGCCCCTCAATCCCCACCGTGGCGCAATGCGCCCCTCAGCTCCTTCCACTGGCCACATGTGCACCATTTGTTCAAGGCACTGCCCCATCACCTGGACAGTCATGCTGCGACAACCTCAATGTGGTCTATAGCCAGCAGCCTCGCTGCCTTTGCCTTCTGCTCAATAGCACTGCTCTCAGCTCTTTCACTGTTAACTCCACACTTGCTCTCCAGCTGCCTGCTCTTTGCACCCTTCCAGTCGACGCCTCTGCTTGTTCTGGATCAGCACAGGTGCCACCTAGTTCTCAAGTTTCCTTCGGGGCAAACAGCACCTCACCTGCTACTAACTCTACAGCGGCTGCCTCTCCAATGGTTCAAGCTCCACCGCCAAGATCAACCTCGAACGGGGGGAGTGCAAGCACTAGTCTGAAATTGAACATTAGAAGCTACACTGTGACGGTGATTATGGCTGGGTTTCTGATGCCAAGAGTTCTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

189

Amino Acids

19.24

Weight (kDa)

8.16

Isoelectric Point (pI)

67.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 29 - 114 4.5e-14 Probable lipid transfer
Tryp_alpha_amyl PF00234 39 - 111 7.3e-10 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016222)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73890
fragaria_vesca FvH4_5g12310
malus_domestica MD06G1215100.v1.1 MD14G1225900.v1.1
prunus_persica Prupe.5G220400_v2.0.a1
pyrus_communis pycom06g19170
rosa_chinensis RchiOBHm_Chr7g0185251
rosa_laevigata RLG00000004927
rosa_roxburghii Rroxscaffold_3G00269110
rosa_rugosa Rorug06G0467300
rosa_samantha Rh7AG075500 Rh7BG071800 Rh7CG073000 Rh7DG072400
rosa_wichuraiana Rw7G006020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 412
Acc36I ACCTGC 1 cut(s) 412
AccB1I GGYRCC 1 cut(s) 358
AccB7I CCANNNNNTGG 1 cut(s) 179
AccI GTMKAC 1 cut(s) 327
AciI CCGC 2 cut(s) 422, 452
AclWI GGATC 1 cut(s) 355
AcoI YGGCCR 1 cut(s) 138
AcyI GRCGYC 1 cut(s) 330
AfiI CCNNNNNNNGG 5 cut(s) 106, 136, 179, 208, 471
AflIII ACRYGT 1 cut(s) 143
AgsI TTSAA 3 cut(s) 161, 443, 502
AhlI ACTAGT 1 cut(s) 488
AjnI CCWGG 1 cut(s) 178
AluBI AGCT 5 cut(s) 127, 267, 301, 446, 513
AluI AGCT 5 cut(s) 127, 267, 301, 446, 513
Alw21I GWGCWC 1 cut(s) 151
Alw44I GTGCAC 1 cut(s) 147
AlwI GGATC 1 cut(s) 355
AlwNI CAGNNNCTG 1 cut(s) 425
AoxI GGCC 1 cut(s) 138
ApaLI GTGCAC 1 cut(s) 147
ApeKI GCWGC 5 cut(s) 192, 223, 231, 301, 425
AspLEI GCGC 2 cut(s) 112, 119
AsuHPI GGTGA 3 cut(s) 168, 393, 538
BaeGI GKGCMC 1 cut(s) 151
BalI TGGCCA 1 cut(s) 140
BanI GGYRCC 1 cut(s) 358
Bbv12I GWGCWC 1 cut(s) 151
BbvCI CCTCAGC 1 cut(s) 123
BbvI GCAGC 5 cut(s) 179, 218, 235, 288, 412
BccI CCATC 2 cut(s) 70, 181
BcgI CGANNNNNNTGC 2 cut(s) 317, 351
BciT130I CCWGG 1 cut(s) 180
BcuI ACTAGT 1 cut(s) 488
BfaI CTAG 2 cut(s) 366, 489
BfmI CTRYAG 2 cut(s) 214, 417
BfuAI ACCTGC 1 cut(s) 412
BisI GCNGC 6 cut(s) 193, 224, 232, 302, 423, 426
BlsI GCNGC 6 cut(s) 194, 225, 233, 303, 424, 427
Bme1390I CCNGG 1 cut(s) 180
BmiI GGNNCC 1 cut(s) 360
BmrFI CCNGG 1 cut(s) 180
BmsI GCATC 1 cut(s) 537
BpmI CTGGAG 1 cut(s) 281
Bpu10I CCTNAGC 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 357
BsaHI GRCGYC 1 cut(s) 330
BsaJI CCNNGG 1 cut(s) 105
BsaXI ACNNNNNCTCC 2 cut(s) 279, 309
Bsc4I CCNNNNNNNGG 5 cut(s) 106, 136, 179, 208, 471
Bse1I ACTGG 2 cut(s) 141, 323
Bse3DI GCAATG 1 cut(s) 119
BseBI CCWGG 1 cut(s) 180
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 1 cut(s) 65
BseLI CCNNNNNNNGG 5 cut(s) 106, 136, 179, 208, 471
BseMI GCAATG 1 cut(s) 119
BseMII CTCAG 2 cut(s) 137, 277
BseNI ACTGG 2 cut(s) 141, 323
BseSI GKGCMC 1 cut(s) 151
BseXI GCAGC 5 cut(s) 179, 218, 235, 288, 412
BseYI CCCAGC 2 cut(s) 86, 536
BshFI GGCC 1 cut(s) 140
BshNI GGYRCC 1 cut(s) 358
BsiHKAI GWGCWC 1 cut(s) 151
BslI CCNNNNNNNGG 5 cut(s) 106, 136, 179, 208, 471
BsnI GGCC 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 151
Bsp143I GATC 2 cut(s) 347, 458
BspACI CCGC 2 cut(s) 422, 452
BspANI GGCC 1 cut(s) 140
BspCNI CTCAG 2 cut(s) 136, 276
BspLI GGNNCC 1 cut(s) 360
BspMI ACCTGC 1 cut(s) 412
BspPI GGATC 1 cut(s) 355
BspT107I GGYRCC 1 cut(s) 358
BsrDI GCAATG 1 cut(s) 119
BsrI ACTGG 2 cut(s) 141, 323
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 2 cut(s) 347, 458
BssNI GRCGYC 1 cut(s) 330
Bst2UI CCWGG 1 cut(s) 180
Bst4CI ACNGT 5 cut(s) 106, 186, 277, 520, 526
BstACI GRCGYC 1 cut(s) 330
BstC8I GCNNGC 3 cut(s) 221, 306, 484
BstDEI CTNAG 2 cut(s) 123, 263
BstDSI CCRYGG 1 cut(s) 105
BstF5I GGATG 1 cut(s) 65
BstHHI GCGC 2 cut(s) 112, 119
BstKTI GATC 2 cut(s) 350, 461
BstMBI GATC 2 cut(s) 347, 458
BstMWI GCNNNNNNNGC 3 cut(s) 116, 146, 237
BstNI CCWGG 1 cut(s) 180
BstNSI RCATGY 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 178
BstSFI CTRYAG 2 cut(s) 214, 417
BstSLI GKGCMC 1 cut(s) 151
BstV1I GCAGC 5 cut(s) 179, 218, 235, 288, 412
BsuRI GGCC 1 cut(s) 140
BtgI CCRYGG 1 cut(s) 105
BtsCI GGATG 1 cut(s) 65
BtsI GCAGTG 2 cut(s) 165, 255
BtsIMutI CAGTG 5 cut(s) 134, 165, 255, 273, 516
BveI ACCTGC 1 cut(s) 412
Cac8I GCNNGC 3 cut(s) 221, 306, 484
CaiI CAGNNNCTG 1 cut(s) 425
CfoI GCGC 2 cut(s) 112, 119
CseI GACGC 1 cut(s) 338
CviAII CATG 3 cut(s) 55, 144, 189
DdeI CTNAG 2 cut(s) 123, 263
DpnI GATC 2 cut(s) 349, 460
DpnII GATC 2 cut(s) 347, 458
EaeI YGGCCR 1 cut(s) 138
EcoRII CCWGG 1 cut(s) 178
FaeI CATG 3 cut(s) 58, 147, 192
FaiI YATR 6 cut(s) 23, 56, 145, 190, 216, 533
FatI CATG 3 cut(s) 54, 143, 188
FblI GTMKAC 1 cut(s) 327
Fnu4HI GCNGC 6 cut(s) 193, 224, 232, 302, 423, 426
FokI GGATG 1 cut(s) 52
Fsp4HI GCNGC 6 cut(s) 193, 224, 232, 302, 423, 426
FspBI CTAG 2 cut(s) 366, 489
GlaI GCGC 2 cut(s) 111, 118
GluI GCNGC 6 cut(s) 193, 224, 232, 302, 423, 426
GsaI CCCAGC 2 cut(s) 90, 540
GsuI CTGGAG 1 cut(s) 281
HaeIII GGCC 1 cut(s) 140
HgaI GACGC 1 cut(s) 338
HhaI GCGC 2 cut(s) 112, 119
Hin1I GRCGYC 1 cut(s) 330
Hin1II CATG 3 cut(s) 58, 147, 192
Hin6I GCGC 2 cut(s) 110, 117
HinP1I GCGC 2 cut(s) 110, 117
HincII GTYRAC 2 cut(s) 280, 328
HindII GTYRAC 2 cut(s) 280, 328
HinfI GANTC 1 cut(s) 34
HpaI GTTAAC 1 cut(s) 280
HphI GGTGA 3 cut(s) 168, 393, 538
Hpy166II GTNNAC 3 cut(s) 149, 280, 328
Hpy188I TCNGA 3 cut(s) 33, 495, 546
Hpy188III TCNNGA 2 cut(s) 17, 345
Hpy8I GTNNAC 3 cut(s) 149, 280, 328
Hpy99I CGWCG 1 cut(s) 332
HpyAV CCTTC 5 cut(s) 20, 140, 251, 329, 391
HpyCH4III ACNGT 5 cut(s) 106, 186, 277, 520, 526
HpyCH4V TGCA 3 cut(s) 149, 315, 482
HpyF10VI GCNNNNNNNGC 3 cut(s) 116, 146, 237
HpyF3I CTNAG 2 cut(s) 123, 263
Hsp92I GRCGYC 1 cut(s) 330
Hsp92II CATG 3 cut(s) 58, 147, 192
HspAI GCGC 2 cut(s) 110, 117
KspAI GTTAAC 1 cut(s) 280
Kzo9I GATC 2 cut(s) 347, 458
LmnI GCTCC 2 cut(s) 132, 451
Lsp1109I GCAGC 5 cut(s) 179, 218, 235, 288, 412
LweI GCATC 1 cut(s) 537
MaeI CTAG 2 cut(s) 366, 489
MaeIII GTNAC 1 cut(s) 520
MalI GATC 2 cut(s) 349, 460
MboI GATC 2 cut(s) 347, 458
MhlI GDGCHC 1 cut(s) 151
MlsI TGGCCA 1 cut(s) 140
MluCI AATT 1 cut(s) 497
MluNI TGGCCA 1 cut(s) 140
MlyI GAGTC 1 cut(s) 28
Mox20I TGGCCA 1 cut(s) 140
MscI TGGCCA 1 cut(s) 140
MseI TTAA 1 cut(s) 279
MslI CAYNNNNRTG 1 cut(s) 53
Msp20I TGGCCA 1 cut(s) 140
MspA1I CMGCKG 2 cut(s) 301, 422
MspR9I CCNGG 1 cut(s) 180
MvaI CCWGG 1 cut(s) 180
MwoI GCNNNNNNNGC 3 cut(s) 116, 146, 237
NdeII GATC 2 cut(s) 347, 458
NlaIII CATG 3 cut(s) 58, 147, 192
NlaIV GGNNCC 1 cut(s) 360
NmuCI GTSAC 1 cut(s) 520
NspI RCATGY 1 cut(s) 147
PaqCI CACCTGC 1 cut(s) 412
PciI ACATGT 1 cut(s) 143
PflMI CCANNNNNTGG 1 cut(s) 179
PkrI GCNGC 6 cut(s) 194, 225, 233, 303, 424, 427
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
PscI ACATGT 1 cut(s) 143
Psp6I CCWGG 1 cut(s) 178
PspFI CCCAGC 2 cut(s) 86, 536
PspGI CCWGG 1 cut(s) 178
PspN4I GGNNCC 1 cut(s) 360
PstNI CAGNNNCTG 1 cut(s) 425
PvuII CAGCTG 1 cut(s) 301
RseI CAYNNNNRTG 1 cut(s) 53
SalI GTCGAC 1 cut(s) 326
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 6 cut(s) 193, 224, 232, 302, 423, 426
Sau3AI GATC 2 cut(s) 347, 458
SchI GAGTC 1 cut(s) 28
ScrFI CCNGG 1 cut(s) 180
SduI GDGCHC 1 cut(s) 151
SfaNI GCATC 1 cut(s) 537
SfcI CTRYAG 2 cut(s) 214, 417
SmiMI CAYNNNNRTG 1 cut(s) 53
SmlI CTYRAG 1 cut(s) 372
SmoI CTYRAG 1 cut(s) 372
SpeI ACTAGT 1 cut(s) 488
Sse9I AATT 1 cut(s) 497
SsiI CCGC 2 cut(s) 422, 452
SspMI CTAG 2 cut(s) 366, 489
StyD4I CCNGG 1 cut(s) 178
TaaI ACNGT 5 cut(s) 106, 186, 277, 520, 526
TaqI TCGA 2 cut(s) 327, 467
TasI AATT 1 cut(s) 497
TauI GCSGC 1 cut(s) 425
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TscAI CASTG 5 cut(s) 141, 172, 262, 280, 523
TseFI GTSAC 1 cut(s) 520
TseI GCWGC 5 cut(s) 192, 223, 231, 301, 425
Tsp45I GTSAC 1 cut(s) 520
TspRI CASTG 5 cut(s) 141, 172, 262, 280, 523
Van91I CCANNNNNTGG 1 cut(s) 179
VneI GTGCAC 1 cut(s) 147
XceI RCATGY 1 cut(s) 147
XmiI GTMKAC 1 cut(s) 327
XspI CTAG 2 cut(s) 366, 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.