Rorug06G0467300

Probable lipid transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0016222
Physical Location & Seq
Reverse (-)
59152613 .. 59154004
1392 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0467300.1

Sequence Viewer

Length: 945 bp
ATGCAATACGCAACGACGTCGTTAATGGACAAAGCGGTGTCCCCATCAATTCTTTACACCCTTTCACCCAAGCCCTCCCCCTCAATTTCAACCAGAAAGCTCCCCTCCCTGTTTCTCTGCTGCTCCGATTCGAGCACCACCGCCGCCTCCACCTCTTGGTCTCCGCCTCCGATTCCGGCCACCACGGGCACGGCGCCGCCGGTCGTGAGGCGGAGGACGAGGTACAGGAAGCAGTACCCGGGAGAGAGCAAAGGCATCACCGAAGAGATGAGGTTCGTCGCCATGAGGCTCCGTAACAGAAACGGCAAGAAACTCGACCCCCGATCTGACGGTGATGATAGTCAGAGTGAAAGTGACGATAATGCCCCTGACGACAGTGATGCTTCGGAATCTGACGGCGAGAAGGAGACTTGGCAGCCTAGCGTGGAGGGGTTTCTCAAGTACTTGGTGGACAGTAAGCTGGTGTTTGACACCGTGGAGCGCATTGTTGATGATTCAAACGACGTCGCTTACGCGTATTTCAGGAATACCGGATTGGAAAGATCGGAAGCGCTTTCGAAAGATTTGCAATGGTTTGGTGAACAGGGCAATGTGATTCCGGAGCCCAGCAATCCAGGAGTTTCTTATGCCAAGTATCTTAAACAACTTGCAGAAACTTGTGCGCCATTGTTCCTCTGCCACTTTTATAATATATATTTTTCACATGTATCTGGTGGGCAGGTCATAGCAAGACAGGTATCTGAGAGGCTACTTGAAGGAAGGGAGTTGGAGTTTTACACATGGGAAGGTGATGTGCCAGAGTTAATGAGAGGGGTTCGTGAGAAGCTCAACAAGCTTGGAGAGCACTGGAGTCGAGATGACAAGAACAAATGCTTAAGAGAAACAACCAAGTCATTCCGATCTCTGGGGCAGATAATTCGCCTGATCATCTTAGAAACCAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

314

Amino Acids

35.46

Weight (kDa)

5.83

Isoelectric Point (pI)

51.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Heme_oxygenase PF01126 142 - 306 3.8e-11 Heme oxygenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016222)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73890
fragaria_vesca FvH4_5g12310
malus_domestica MD06G1215100.v1.1 MD14G1225900.v1.1
prunus_persica Prupe.5G220400_v2.0.a1
pyrus_communis pycom06g19170
rosa_chinensis RchiOBHm_Chr7g0185251
rosa_laevigata RLG00000004927
rosa_roxburghii Rroxscaffold_3G00269110
rosa_rugosa Rorug06G0467300
rosa_samantha Rh7AG075500 Rh7BG071800 Rh7CG073000 Rh7DG072400
rosa_wichuraiana Rw7G006020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 687
AatII GACGTC 2 cut(s) 20, 507
Acc36I ACCTGC 1 cut(s) 709
AccB1I GGYRCC 1 cut(s) 193
AccB7I CCANNNNNTGG 1 cut(s) 156
AccII CGCG 1 cut(s) 515
AccIII TCCGGA 1 cut(s) 598
AciI CCGC 6 cut(s) 35, 141, 144, 164, 197, 211
AcoI YGGCCR 1 cut(s) 177
AcyI GRCGYC 3 cut(s) 17, 194, 504
AfaI GTAC 3 cut(s) 224, 236, 443
AfeI AGCGCT 1 cut(s) 552
AfiI CCNNNNNNNGG 2 cut(s) 156, 904
AflII CTTAAG 1 cut(s) 874
AflIII ACRYGT 2 cut(s) 513, 703
AgsI TTSAA 3 cut(s) 90, 498, 755
AjnI CCWGG 1 cut(s) 613
AjuI GAANNNNNNNTTGG 2 cut(s) 518, 550
AluBI AGCT 4 cut(s) 100, 460, 826, 835
AluI AGCT 4 cut(s) 100, 460, 826, 835
Alw21I GWGCWC 2 cut(s) 137, 846
Alw26I GTCTC 2 cut(s) 165, 401
Ama87I CYCGRG 1 cut(s) 238
Aor13HI TCCGGA 1 cut(s) 598
Aor51HI AGCGCT 1 cut(s) 552
AoxI GGCC 1 cut(s) 177
ApeKI GCWGC 2 cut(s) 120, 415
AspLEI GCGC 4 cut(s) 196, 483, 553, 664
AsuC2I CCSGG 2 cut(s) 239, 240
AsuHPI GGTGA 5 cut(s) 57, 250, 344, 590, 800
AsuII TTCGAA 1 cut(s) 557
AvaI CYCGRG 1 cut(s) 238
BaeGI GKGCMC 1 cut(s) 191
BanI GGYRCC 1 cut(s) 193
BanII GRGCYC 1 cut(s) 606
Bbv12I GWGCWC 2 cut(s) 137, 846
BbvI GCAGC 2 cut(s) 107, 427
BccI CCATC 1 cut(s) 52
BceAI ACGGC 3 cut(s) 207, 319, 412
BciT130I CCWGG 1 cut(s) 615
BclI TGATCA 1 cut(s) 924
BcnI CCSGG 2 cut(s) 239, 240
BcoDI GTCTC 2 cut(s) 165, 401
BfaI CTAG 1 cut(s) 420
BfoI RGCGCY 2 cut(s) 197, 554
BfrI CTTAAG 1 cut(s) 874
BfuAI ACCTGC 1 cut(s) 709
BisI GCNGC 4 cut(s) 121, 144, 197, 416
BlsI GCNGC 4 cut(s) 122, 145, 198, 417
BmcAI AGTACT 1 cut(s) 443
Bme1390I CCNGG 3 cut(s) 239, 240, 615
BmeT110I CYCGRG 1 cut(s) 238
BmiI GGNNCC 3 cut(s) 195, 290, 603
BmrFI CCNGG 3 cut(s) 239, 240, 615
BmsI GCATC 2 cut(s) 264, 370
BpmI CTGGAG 1 cut(s) 868
Bpu14I TTCGAA 1 cut(s) 557
BpuEI CTTGAG 1 cut(s) 422
BpuMI CCSGG 2 cut(s) 239, 240
BsaHI GRCGYC 3 cut(s) 17, 194, 504
BsaI GGTCTC 1 cut(s) 165
BsaJI CCNNGG 3 cut(s) 183, 238, 474
BsaWI WCCGGW 2 cut(s) 530, 598
BsaXI ACNNNNNCTCC 2 cut(s) 755, 785
Bsc4I CCNNNNNNNGG 2 cut(s) 156, 904
Bse118I RCCGGY 1 cut(s) 199
Bse1I ACTGG 1 cut(s) 851
Bse3DI GCAATG 2 cut(s) 575, 595
BseAI TCCGGA 1 cut(s) 598
BseBI CCWGG 1 cut(s) 615
BseDI CCNNGG 3 cut(s) 183, 238, 474
BseLI CCNNNNNNNGG 2 cut(s) 156, 904
BseMI GCAATG 2 cut(s) 575, 595
BseMII CTCAG 1 cut(s) 732
BseNI ACTGG 1 cut(s) 851
BseSI GKGCMC 1 cut(s) 191
BseXI GCAGC 2 cut(s) 107, 427
BseYI CCCAGC 1 cut(s) 605
Bsh1236I CGCG 1 cut(s) 515
Bsh1285I CGRYCG 1 cut(s) 204
BshFI GGCC 1 cut(s) 179
BshNI GGYRCC 1 cut(s) 193
BsiEI CGRYCG 1 cut(s) 204
BsiHKAI GWGCWC 2 cut(s) 137, 846
BsiHKCI CYCGRG 1 cut(s) 238
BsiSI CCGG 5 cut(s) 176, 200, 239, 531, 599
BslFI GGGAC 1 cut(s) 25
BslI CCNNNNNNNGG 2 cut(s) 156, 904
BsmAI GTCTC 2 cut(s) 165, 401
BsmFI GGGAC 1 cut(s) 25
BsnI GGCC 1 cut(s) 179
Bso31I GGTCTC 1 cut(s) 165
BsoBI CYCGRG 1 cut(s) 238
Bsp119I TTCGAA 1 cut(s) 557
Bsp1286I GDGCHC 4 cut(s) 137, 191, 606, 846
Bsp13I TCCGGA 1 cut(s) 598
Bsp143I GATC 4 cut(s) 323, 542, 899, 924
BspACI CCGC 6 cut(s) 35, 141, 144, 164, 197, 211
BspANI GGCC 1 cut(s) 179
BspCNI CTCAG 1 cut(s) 733
BspEI TCCGGA 1 cut(s) 598
BspFNI CGCG 1 cut(s) 515
BspLI GGNNCC 3 cut(s) 195, 290, 603
BspMI ACCTGC 1 cut(s) 709
BspT104I TTCGAA 1 cut(s) 557
BspT107I GGYRCC 1 cut(s) 193
BspTI CTTAAG 1 cut(s) 874
BspTNI GGTCTC 1 cut(s) 165
BsrDI GCAATG 2 cut(s) 575, 595
BsrFI RCCGGY 1 cut(s) 199
BsrI ACTGG 1 cut(s) 851
BssAI RCCGGY 1 cut(s) 199
BssECI CCNNGG 3 cut(s) 183, 238, 474
BssMI GATC 4 cut(s) 323, 542, 899, 924
BssNI GRCGYC 3 cut(s) 17, 194, 504
Bst2UI CCWGG 1 cut(s) 615
Bst4CI ACNGT 4 cut(s) 332, 377, 455, 475
Bst6I CTCTTC 1 cut(s) 258
BstACI GRCGYC 3 cut(s) 17, 194, 504
BstAFI CTTAAG 1 cut(s) 874
BstBI TTCGAA 1 cut(s) 557
BstDEI CTNAG 2 cut(s) 741, 931
BstDSI CCRYGG 2 cut(s) 183, 474
BstFNI CGCG 1 cut(s) 515
BstH2I RGCGCY 2 cut(s) 197, 554
BstHHI GCGC 4 cut(s) 196, 483, 553, 664
BstKTI GATC 4 cut(s) 326, 545, 902, 927
BstMAI GTCTC 2 cut(s) 165, 401
BstMBI GATC 4 cut(s) 323, 542, 899, 924
BstMCI CGRYCG 1 cut(s) 204
BstMWI GCNNNNNNNGC 2 cut(s) 832, 841
BstNI CCWGG 1 cut(s) 615
BstNSI RCATGY 1 cut(s) 707
BstSCI CCNGG 3 cut(s) 237, 238, 613
BstSLI GKGCMC 1 cut(s) 191
BstUI CGCG 1 cut(s) 515
BstV1I GCAGC 2 cut(s) 107, 427
BsuRI GGCC 1 cut(s) 179
BtgI CCRYGG 2 cut(s) 183, 474
BtsIMutI CAGTG 2 cut(s) 382, 844
BveI ACCTGC 1 cut(s) 709
CfoI GCGC 4 cut(s) 196, 483, 553, 664
Cfr10I RCCGGY 1 cut(s) 199
Cfr9I CCCGGG 1 cut(s) 238
Csp6I GTAC 3 cut(s) 223, 235, 442
CviAII CATG 3 cut(s) 283, 704, 780
CviQI GTAC 3 cut(s) 223, 235, 442
DdeI CTNAG 2 cut(s) 741, 931
DinI GGCGCC 1 cut(s) 195
DpnI GATC 4 cut(s) 325, 544, 901, 926
DpnII GATC 4 cut(s) 323, 542, 899, 924
EaeI YGGCCR 1 cut(s) 177
Eam1104I CTCTTC 1 cut(s) 258
EarI CTCTTC 1 cut(s) 258
EciI GGCGGA 2 cut(s) 153, 226
Eco24I GRGCYC 1 cut(s) 606
Eco31I GGTCTC 1 cut(s) 165
Eco47III AGCGCT 1 cut(s) 552
Eco88I CYCGRG 1 cut(s) 238
EcoRII CCWGG 1 cut(s) 613
EcoT38I GRGCYC 1 cut(s) 606
EgeI GGCGCC 1 cut(s) 195
EheI GGCGCC 1 cut(s) 195
FaeI CATG 3 cut(s) 286, 707, 783
FaiI YATR 8 cut(s) 284, 627, 687, 692, 694, 705, 725, 781
FaqI GGGAC 1 cut(s) 25
FatI CATG 3 cut(s) 282, 703, 779
FbaI TGATCA 1 cut(s) 924
Fnu4HI GCNGC 4 cut(s) 121, 144, 197, 416
FriOI GRGCYC 1 cut(s) 606
Fsp4HI GCNGC 4 cut(s) 121, 144, 197, 416
FspBI CTAG 1 cut(s) 420
GlaI GCGC 4 cut(s) 195, 482, 552, 663
GluI GCNGC 4 cut(s) 121, 144, 197, 416
GsaI CCCAGC 1 cut(s) 609
GsuI CTGGAG 1 cut(s) 868
HaeII RGCGCY 2 cut(s) 197, 554
HaeIII GGCC 1 cut(s) 179
HapII CCGG 5 cut(s) 176, 200, 239, 531, 599
HhaI GCGC 4 cut(s) 196, 483, 553, 664
Hin1I GRCGYC 3 cut(s) 17, 194, 504
Hin1II CATG 3 cut(s) 286, 707, 783
Hin6I GCGC 4 cut(s) 194, 481, 551, 662
HinP1I GCGC 4 cut(s) 194, 481, 551, 662
HindIII AAGCTT 1 cut(s) 833
HinfI GANTC 6 cut(s) 128, 172, 389, 494, 595, 850
HpaII CCGG 5 cut(s) 176, 200, 239, 531, 599
HphI GGTGA 5 cut(s) 57, 250, 344, 590, 800
Hpy166II GTNNAC 2 cut(s) 451, 581
Hpy188I TCNGA 9 cut(s) 127, 171, 328, 345, 388, 394, 547, 742, 899
Hpy188III TCNNGA 5 cut(s) 205, 523, 599, 818, 854
Hpy8I GTNNAC 2 cut(s) 451, 581
Hpy99I CGWCG 5 cut(s) 19, 22, 281, 506, 509
HpyAV CCTTC 4 cut(s) 397, 749, 753, 779
HpyCH4III ACNGT 4 cut(s) 332, 377, 455, 475
HpyCH4IV ACGT 2 cut(s) 17, 504
HpyCH4V TGCA 3 cut(s) 4, 568, 650
HpyF10VI GCNNNNNNNGC 2 cut(s) 832, 841
HpyF3I CTNAG 2 cut(s) 741, 931
HpySE526I ACGT 2 cut(s) 17, 504
Hsp92I GRCGYC 3 cut(s) 17, 194, 504
Hsp92II CATG 3 cut(s) 286, 707, 783
HspAI GCGC 4 cut(s) 194, 481, 551, 662
KasI GGCGCC 1 cut(s) 193
Kpn2I TCCGGA 1 cut(s) 598
Ksp22I TGATCA 1 cut(s) 924
Kzo9I GATC 4 cut(s) 323, 542, 899, 924
LmnI GCTCC 5 cut(s) 105, 128, 294, 478, 601
Lsp1109I GCAGC 2 cut(s) 107, 427
LweI GCATC 2 cut(s) 264, 370
MaeI CTAG 1 cut(s) 420
MaeII ACGT 2 cut(s) 17, 504
MaeIII GTNAC 2 cut(s) 293, 353
MalI GATC 4 cut(s) 325, 544, 901, 926
MboI GATC 4 cut(s) 323, 542, 899, 924
MboII GAAGA 1 cut(s) 275
MhlI GDGCHC 4 cut(s) 137, 191, 606, 846
MluCI AATT 3 cut(s) 48, 84, 915
MluI ACGCGT 1 cut(s) 513
Mly113I GGCGCC 1 cut(s) 194
MlyI GAGTC 1 cut(s) 859
MmeI TCCRAC 1 cut(s) 747
MroI TCCGGA 1 cut(s) 598
MseI TTAA 4 cut(s) 23, 639, 803, 875
MspCI CTTAAG 1 cut(s) 874
MspI CCGG 5 cut(s) 176, 200, 239, 531, 599
MspR9I CCNGG 3 cut(s) 239, 240, 615
MvaI CCWGG 1 cut(s) 615
MvnI CGCG 1 cut(s) 515
MwoI GCNNNNNNNGC 2 cut(s) 832, 841
NarI GGCGCC 1 cut(s) 194
NciI CCSGG 2 cut(s) 239, 240
NdeII GATC 4 cut(s) 323, 542, 899, 924
NlaIII CATG 3 cut(s) 286, 707, 783
NlaIV GGNNCC 3 cut(s) 195, 290, 603
NmuCI GTSAC 1 cut(s) 353
NspI RCATGY 1 cut(s) 707
NspV TTCGAA 1 cut(s) 557
PciI ACATGT 1 cut(s) 703
PfeI GAWTC 5 cut(s) 128, 172, 389, 494, 595
PflMI CCANNNNNTGG 1 cut(s) 156
PfoI TCCNGGA 1 cut(s) 613
PkrI GCNGC 4 cut(s) 122, 145, 198, 417
PleI GAGTC 1 cut(s) 858
PluTI GGCGCC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 858
PscI ACATGT 1 cut(s) 703
PsiI TTATAA 1 cut(s) 687
Psp6I CCWGG 1 cut(s) 613
PspFI CCCAGC 1 cut(s) 605
PspGI CCWGG 1 cut(s) 613
PspN4I GGNNCC 3 cut(s) 195, 290, 603
RsaI GTAC 3 cut(s) 224, 236, 443
RsaNI GTAC 3 cut(s) 223, 235, 442
SaqAI TTAA 4 cut(s) 23, 639, 803, 875
SatI GCNGC 4 cut(s) 121, 144, 197, 416
Sau3AI GATC 4 cut(s) 323, 542, 899, 924
ScaI AGTACT 1 cut(s) 443
SchI GAGTC 1 cut(s) 859
ScrFI CCNGG 3 cut(s) 239, 240, 615
SduI GDGCHC 4 cut(s) 137, 191, 606, 846
SfaNI GCATC 2 cut(s) 264, 370
SfoI GGCGCC 1 cut(s) 195
SfuI TTCGAA 1 cut(s) 557
SmaI CCCGGG 1 cut(s) 240
SmlI CTYRAG 2 cut(s) 437, 874
SmoI CTYRAG 2 cut(s) 437, 874
Sse9I AATT 3 cut(s) 48, 84, 915
SsiI CCGC 6 cut(s) 35, 141, 144, 164, 197, 211
SspDI GGCGCC 1 cut(s) 193
SspMI CTAG 1 cut(s) 420
StyD4I CCNGG 3 cut(s) 237, 238, 613
TaaI ACNGT 4 cut(s) 332, 377, 455, 475
TaiI ACGT 2 cut(s) 20, 507
TaqI TCGA 4 cut(s) 131, 315, 557, 853
TasI AATT 3 cut(s) 48, 84, 915
TatI WGTACW 1 cut(s) 441
TauI GCSGC 2 cut(s) 146, 199
TfiI GAWTC 5 cut(s) 128, 172, 389, 494, 595
Tru1I TTAA 4 cut(s) 23, 639, 803, 875
Tru9I TTAA 4 cut(s) 23, 639, 803, 875
TscAI CASTG 2 cut(s) 382, 851
TseFI GTSAC 1 cut(s) 353
TseI GCWGC 2 cut(s) 120, 415
Tsp45I GTSAC 1 cut(s) 353
TspGWI ACGGA 1 cut(s) 281
TspMI CCCGGG 1 cut(s) 238
TspRI CASTG 2 cut(s) 382, 851
Van91I CCANNNNNTGG 1 cut(s) 156
Vha464I CTTAAG 1 cut(s) 874
XceI RCATGY 1 cut(s) 707
XmaI CCCGGG 1 cut(s) 238
XspI CTAG 1 cut(s) 420
ZraI GACGTC 2 cut(s) 18, 505
ZrmI AGTACT 1 cut(s) 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.