Rh7DG072400

Probable lipid transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0016222
Physical Location & Seq
Forward (+)
5605874 .. 5609634
3761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG072400.1

Sequence Viewer

Length: 588 bp
ATGGCCTCCCTTCCTTTTGCCATTTCCTCTCTGACTCTGCTCTTTCTCATTTCCCTGTTTCCATCATCCACCCTTTCACAAGACCCCAACTCCTCAATCCCAACCGTAGCGCAATGCGCTCCTCAGCTGCTTCCACTGGCCACATGCGCACCATTTGTGCAAGGCACCGCCCCATCACCTGCAAAGTCATGCTGTGACAACCTCAATCTGGTCTATAGCCAGCAGCCTAGATGCCTTTGCCTTTTGCTCAACAGCACTACTCTGAGCTCTTTCCCAATTAACACCACACTAGCTCTTCAGCTGCCTGCTCTTTGCACCCTTCCAGTTGACGCCTCTGCTTGTTCGCGAGCACAGGTGCCACCTAGTACTCCTAGTTCTCAAGTTTCCTTTGGGGCAAACAACACCTCACCTGCTACTAACACTACAGTGGCTGCTTCTCCAATGGTTCAAGCTCCACCGCCAAGACCAACCATGATGGGGGTAGGGTTTGGCAGAAACGCAAGTACTGGTCTGAAATCAAAGACTGGAAGTTATCTCGCAGTGATGTTGATTATGGCTGGTTTTCTGATGCCAGGAATTCTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

195

Amino Acids

20.12

Weight (kDa)

8.72

Isoelectric Point (pI)

60.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 32 - 114 2e-14 Probable lipid transfer
Tryp_alpha_amyl PF00234 39 - 111 3.6e-09 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016222)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73890
fragaria_vesca FvH4_5g12310
malus_domestica MD06G1215100.v1.1 MD14G1225900.v1.1
prunus_persica Prupe.5G220400_v2.0.a1
pyrus_communis pycom06g19170
rosa_chinensis RchiOBHm_Chr7g0185251
rosa_laevigata RLG00000004927
rosa_roxburghii Rroxscaffold_3G00269110
rosa_rugosa Rorug06G0467300
rosa_samantha Rh7AG075500 Rh7BG071800 Rh7CG073000 Rh7DG072400
rosa_wichuraiana Rw7G006020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 187, 418
Acc16I TGCGCA 1 cut(s) 148
Acc36I ACCTGC 2 cut(s) 187, 418
AccB1I GGYRCC 2 cut(s) 164, 355
AccII CGCG 1 cut(s) 346
AciI CCGC 2 cut(s) 168, 458
AcoI YGGCCR 1 cut(s) 138
AcsI RAATTY 1 cut(s) 576
AcuI CTGAAG 1 cut(s) 281
AcyI GRCGYC 1 cut(s) 330
AfaI GTAC 2 cut(s) 367, 505
AfiI CCNNNNNNNGG 2 cut(s) 208, 477
AgsI TTSAA 1 cut(s) 449
AjnI CCWGG 1 cut(s) 571
AleI CACNNNNGTG 1 cut(s) 425
AluBI AGCT 5 cut(s) 127, 267, 293, 301, 452
AluI AGCT 5 cut(s) 127, 267, 293, 301, 452
Alw21I GWGCWC 2 cut(s) 269, 352
AlwNI CAGNNNCTG 1 cut(s) 431
AoxI GGCC 2 cut(s) 3, 138
ApeKI GCWGC 4 cut(s) 127, 223, 301, 431
ApoI RAATTY 1 cut(s) 576
AspLEI GCGC 3 cut(s) 112, 119, 149
AsuHPI GGTGA 2 cut(s) 168, 399
BalI TGGCCA 1 cut(s) 140
BanI GGYRCC 2 cut(s) 164, 355
BanII GRGCYC 1 cut(s) 269
Bbv12I GWGCWC 2 cut(s) 269, 352
BbvCI CCTCAGC 1 cut(s) 123
BbvI GCAGC 4 cut(s) 114, 235, 288, 418
BccI CCATC 3 cut(s) 70, 181, 469
BciT130I CCWGG 1 cut(s) 573
BfaI CTAG 4 cut(s) 228, 290, 363, 372
BfmI CTRYAG 2 cut(s) 214, 423
BfuAI ACCTGC 2 cut(s) 187, 418
BisI GCNGC 4 cut(s) 128, 224, 302, 432
BlsI GCNGC 4 cut(s) 129, 225, 303, 433
BmcAI AGTACT 2 cut(s) 367, 505
Bme1390I CCNGG 1 cut(s) 573
BmiI GGNNCC 2 cut(s) 166, 357
BmrFI CCNGG 1 cut(s) 573
BmsI GCATC 2 cut(s) 221, 558
Bpu10I CCTNAGC 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 363
BsaHI GRCGYC 1 cut(s) 330
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 2 cut(s) 208, 477
Bse1I ACTGG 4 cut(s) 141, 323, 511, 529
Bse3DI GCAATG 1 cut(s) 119
BseBI CCWGG 1 cut(s) 573
BseGI GGATG 1 cut(s) 65
BseLI CCNNNNNNNGG 2 cut(s) 208, 477
BseMI GCAATG 1 cut(s) 119
BseMII CTCAG 2 cut(s) 137, 254
BseNI ACTGG 4 cut(s) 141, 323, 511, 529
BseRI GAGGAG 2 cut(s) 82, 111
BseXI GCAGC 4 cut(s) 114, 235, 288, 418
Bsh1236I CGCG 1 cut(s) 346
BshFI GGCC 2 cut(s) 5, 140
BshNI GGYRCC 2 cut(s) 164, 355
BsiHKAI GWGCWC 2 cut(s) 269, 352
BslI CCNNNNNNNGG 2 cut(s) 208, 477
BsnI GGCC 2 cut(s) 5, 140
Bsp1286I GDGCHC 2 cut(s) 269, 352
Bsp68I TCGCGA 1 cut(s) 346
BspACI CCGC 2 cut(s) 168, 458
BspANI GGCC 2 cut(s) 5, 140
BspCNI CTCAG 2 cut(s) 136, 255
BspFNI CGCG 1 cut(s) 346
BspLI GGNNCC 2 cut(s) 166, 357
BspMI ACCTGC 2 cut(s) 187, 418
BspQI GCTCTTC 1 cut(s) 300
BspT107I GGYRCC 2 cut(s) 164, 355
BsrDI GCAATG 1 cut(s) 119
BsrI ACTGG 4 cut(s) 141, 323, 511, 529
BssNI GRCGYC 1 cut(s) 330
Bst2UI CCWGG 1 cut(s) 573
Bst4CI ACNGT 2 cut(s) 106, 427
Bst6I CTCTTC 1 cut(s) 300
BstACI GRCGYC 1 cut(s) 330
BstC8I GCNNGC 3 cut(s) 221, 306, 348
BstDEI CTNAG 2 cut(s) 123, 263
BstF5I GGATG 1 cut(s) 65
BstFNI CGCG 1 cut(s) 346
BstHHI GCGC 3 cut(s) 112, 119, 149
BstMWI GCNNNNNNNGC 2 cut(s) 116, 146
BstNI CCWGG 1 cut(s) 573
BstNSI RCATGY 1 cut(s) 147
BstSCI CCNGG 1 cut(s) 571
BstSFI CTRYAG 2 cut(s) 214, 423
BstUI CGCG 1 cut(s) 346
BstV1I GCAGC 4 cut(s) 114, 235, 288, 418
BsuRI GGCC 2 cut(s) 5, 140
BtsCI GGATG 1 cut(s) 65
BtsI GCAGTG 1 cut(s) 546
BtsIMutI CAGTG 3 cut(s) 134, 432, 546
BtuMI TCGCGA 1 cut(s) 346
BveI ACCTGC 2 cut(s) 187, 418
Cac8I GCNNGC 3 cut(s) 221, 306, 348
CaiI CAGNNNCTG 1 cut(s) 431
CfoI GCGC 3 cut(s) 112, 119, 149
CseI GACGC 1 cut(s) 338
Csp6I GTAC 2 cut(s) 366, 504
CviAII CATG 3 cut(s) 144, 189, 472
CviQI GTAC 2 cut(s) 366, 504
DdeI CTNAG 2 cut(s) 123, 263
EaeI YGGCCR 1 cut(s) 138
Eam1104I CTCTTC 1 cut(s) 300
EarI CTCTTC 1 cut(s) 300
Ecl136II GAGCTC 1 cut(s) 267
Eco24I GRGCYC 1 cut(s) 269
Eco53kI GAGCTC 1 cut(s) 267
Eco57I CTGAAG 1 cut(s) 281
EcoICRI GAGCTC 1 cut(s) 267
EcoRI GAATTC 1 cut(s) 576
EcoRII CCWGG 1 cut(s) 571
EcoT38I GRGCYC 1 cut(s) 269
FaeI CATG 3 cut(s) 147, 192, 475
FaiI YATR 5 cut(s) 145, 190, 216, 473, 554
FatI CATG 3 cut(s) 143, 188, 471
Fnu4HI GCNGC 4 cut(s) 128, 224, 302, 432
FokI GGATG 1 cut(s) 52
FriOI GRGCYC 1 cut(s) 269
Fsp4HI GCNGC 4 cut(s) 128, 224, 302, 432
FspAI RTGCGCAY 1 cut(s) 148
FspBI CTAG 4 cut(s) 228, 290, 363, 372
FspI TGCGCA 1 cut(s) 148
GlaI GCGC 3 cut(s) 111, 118, 148
GluI GCNGC 4 cut(s) 128, 224, 302, 432
HaeIII GGCC 2 cut(s) 5, 140
HgaI GACGC 1 cut(s) 338
HhaI GCGC 3 cut(s) 112, 119, 149
Hin1I GRCGYC 1 cut(s) 330
Hin1II CATG 3 cut(s) 147, 192, 475
Hin6I GCGC 3 cut(s) 110, 117, 147
HinP1I GCGC 3 cut(s) 110, 117, 147
HincII GTYRAC 1 cut(s) 328
HindII GTYRAC 1 cut(s) 328
HinfI GANTC 1 cut(s) 34
HphI GGTGA 2 cut(s) 168, 399
Hpy166II GTNNAC 1 cut(s) 328
Hpy188I TCNGA 4 cut(s) 33, 264, 513, 567
Hpy188III TCNNGA 1 cut(s) 345
Hpy8I GTNNAC 1 cut(s) 328
HpyAV CCTTC 2 cut(s) 20, 329
HpyCH4III ACNGT 2 cut(s) 106, 427
HpyCH4V TGCA 3 cut(s) 160, 182, 315
HpyF10VI GCNNNNNNNGC 2 cut(s) 116, 146
HpyF3I CTNAG 2 cut(s) 123, 263
Hsp92I GRCGYC 1 cut(s) 330
Hsp92II CATG 3 cut(s) 147, 192, 475
HspAI GCGC 3 cut(s) 110, 117, 147
LguI GCTCTTC 1 cut(s) 300
LmnI GCTCC 2 cut(s) 124, 457
Lsp1109I GCAGC 4 cut(s) 114, 235, 288, 418
LweI GCATC 2 cut(s) 221, 558
MaeI CTAG 4 cut(s) 228, 290, 363, 372
MaeIII GTNAC 1 cut(s) 194
MboII GAAGA 1 cut(s) 287
MhlI GDGCHC 2 cut(s) 269, 352
MlsI TGGCCA 1 cut(s) 140
MluCI AATT 2 cut(s) 276, 576
MluNI TGGCCA 1 cut(s) 140
MlyI GAGTC 1 cut(s) 28
MnlI CCTC 7 cut(s) 16, 37, 103, 132, 212, 343, 415
Mox20I TGGCCA 1 cut(s) 140
MscI TGGCCA 1 cut(s) 140
MseI TTAA 1 cut(s) 279
MslI CAYNNNNRTG 1 cut(s) 425
Msp20I TGGCCA 1 cut(s) 140
MspA1I CMGCKG 2 cut(s) 127, 301
MspR9I CCNGG 1 cut(s) 573
MvaI CCWGG 1 cut(s) 573
MvnI CGCG 1 cut(s) 346
MwoI GCNNNNNNNGC 2 cut(s) 116, 146
NlaIII CATG 3 cut(s) 147, 192, 475
NlaIV GGNNCC 2 cut(s) 166, 357
NmuCI GTSAC 1 cut(s) 194
NruI TCGCGA 1 cut(s) 346
NsbI TGCGCA 1 cut(s) 148
NspI RCATGY 1 cut(s) 147
OliI CACNNNNGTG 1 cut(s) 425
PaqCI CACCTGC 2 cut(s) 187, 418
PciSI GCTCTTC 1 cut(s) 300
PkrI GCNGC 4 cut(s) 129, 225, 303, 433
PleI GAGTC 1 cut(s) 28
PpsI GAGTC 1 cut(s) 28
Psp124BI GAGCTC 1 cut(s) 269
Psp6I CCWGG 1 cut(s) 571
PspGI CCWGG 1 cut(s) 571
PspN4I GGNNCC 2 cut(s) 166, 357
PsrI GAACNNNNNNTAC 2 cut(s) 358, 390
PstNI CAGNNNCTG 1 cut(s) 431
PvuII CAGCTG 2 cut(s) 127, 301
RruI TCGCGA 1 cut(s) 346
RsaI GTAC 2 cut(s) 367, 505
RsaNI GTAC 2 cut(s) 366, 504
RseI CAYNNNNRTG 1 cut(s) 425
SacI GAGCTC 1 cut(s) 269
SapI GCTCTTC 1 cut(s) 300
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 4 cut(s) 128, 224, 302, 432
ScaI AGTACT 2 cut(s) 367, 505
SchI GAGTC 1 cut(s) 28
ScrFI CCNGG 1 cut(s) 573
SduI GDGCHC 2 cut(s) 269, 352
SfaNI GCATC 2 cut(s) 221, 558
SfcI CTRYAG 2 cut(s) 214, 423
SmiMI CAYNNNNRTG 1 cut(s) 425
SmlI CTYRAG 1 cut(s) 378
SmoI CTYRAG 1 cut(s) 378
Sse9I AATT 2 cut(s) 276, 576
SsiI CCGC 2 cut(s) 168, 458
SspMI CTAG 4 cut(s) 228, 290, 363, 372
SstI GAGCTC 1 cut(s) 269
StyD4I CCNGG 1 cut(s) 571
TaaI ACNGT 2 cut(s) 106, 427
TasI AATT 2 cut(s) 276, 576
TatI WGTACW 2 cut(s) 365, 503
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TscAI CASTG 3 cut(s) 141, 432, 546
TseFI GTSAC 1 cut(s) 194
TseI GCWGC 4 cut(s) 127, 223, 301, 431
Tsp45I GTSAC 1 cut(s) 194
TspRI CASTG 3 cut(s) 141, 432, 546
XapI RAATTY 1 cut(s) 576
XceI RCATGY 1 cut(s) 147
XspI CTAG 4 cut(s) 228, 290, 363, 372
ZrmI AGTACT 2 cut(s) 367, 505
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.