MD06G1215100.v1.1

Probable lipid transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0016222
Physical Location & Seq
Forward (+)
34746280 .. 34746881
602 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1215100.v1.1.491

Sequence Viewer

Length: 468 bp
ATGGCTTCCCCTAACAGCTCTCTGCTTCAAGATCCTTTCTCCATTTCCTCTGTGACTCTACTCCTCTTTCTCGTTTCCCTTCCGCCACCCGTCCTCTCACAAAACCCTAACATTGCTCAATGCACCACGCGGCTTCTTCCACTGGCCCCGTGTGTGCCATTCGTGCAAGGCACTGCCATATCACCTGCACAATCATGCTGTGACAACCTCAAGCTGCTCTACAGCCAGCAGCCAGAGTGCCTTTGCCTTTTTCTCAACGATACTACTTTGAGCACATTCCCTATCAACACCACTCGCGCTCTCCAGCTTCCCGTTGTTTGTAGCCTTCAAGTCGACATCTCTACTTGTTCGGGTGCAGGGATACCTGTACCTGTGCCTCCTAGTTCACCTAGTTCTCAAGATCCCCCTCTGGGGAAAAACACCAACTCATCTGCTGCTAATTCTACAATTGCTGGTAGGAAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

156

Amino Acids

16.21

Weight (kDa)

7.48

Isoelectric Point (pI)

74.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 32 - 116 8.7e-17 Probable lipid transfer
Tryp_alpha_amyl PF00234 41 - 113 5.9e-10 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016222)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73890
fragaria_vesca FvH4_5g12310
malus_domestica MD06G1215100.v1.1 MD14G1225900.v1.1
prunus_persica Prupe.5G220400_v2.0.a1
pyrus_communis pycom06g19170
rosa_chinensis RchiOBHm_Chr7g0185251
rosa_laevigata RLG00000004927
rosa_roxburghii Rroxscaffold_3G00269110
rosa_rugosa Rorug06G0467300
rosa_samantha Rh7AG075500 Rh7BG071800 Rh7CG073000 Rh7DG072400
rosa_wichuraiana Rw7G006020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 193
Acc36I ACCTGC 1 cut(s) 193
AccI GTMKAC 1 cut(s) 333
AccII CGCG 2 cut(s) 130, 297
AciI CCGC 2 cut(s) 83, 130
AclWI GGATC 2 cut(s) 26, 395
AfaI GTAC 1 cut(s) 369
AfiI CCNNNNNNNGG 2 cut(s) 410, 411
AgsI TTSAA 2 cut(s) 29, 329
AluBI AGCT 3 cut(s) 18, 214, 307
AluI AGCT 3 cut(s) 18, 214, 307
Alw21I GWGCWC 1 cut(s) 275
AlwI GGATC 2 cut(s) 26, 395
AoxI GGCC 1 cut(s) 144
ApeKI GCWGC 3 cut(s) 214, 229, 434
AspLEI GCGC 1 cut(s) 299
AspS9I GGNCC 1 cut(s) 145
AsuHPI GGTGA 2 cut(s) 174, 378
Bbv12I GWGCWC 1 cut(s) 275
BbvI GCAGC 3 cut(s) 201, 241, 421
BciVI GTATCC 1 cut(s) 354
BfaI CTAG 2 cut(s) 381, 390
BfmI CTRYAG 1 cut(s) 220
BfuAI ACCTGC 1 cut(s) 193
BfuI GTATCC 1 cut(s) 354
BisI GCNGC 4 cut(s) 131, 215, 230, 435
BlsI GCNGC 4 cut(s) 132, 216, 231, 436
BmgT120I GGNCC 1 cut(s) 145
BmiI GGNNCC 1 cut(s) 147
BpmI CTGGAG 1 cut(s) 287
BpuEI CTTGAG 2 cut(s) 194, 381
Bsc4I CCNNNNNNNGG 2 cut(s) 410, 411
Bse1I ACTGG 1 cut(s) 147
Bse3DI GCAATG 1 cut(s) 111
BseLI CCNNNNNNNGG 2 cut(s) 410, 411
BseMI GCAATG 1 cut(s) 111
BseNI ACTGG 1 cut(s) 147
BseRI GAGGAG 1 cut(s) 53
BseXI GCAGC 3 cut(s) 201, 241, 421
BsgI GTGCAG 2 cut(s) 171, 375
Bsh1236I CGCG 2 cut(s) 130, 297
BshFI GGCC 1 cut(s) 146
BsiHKAI GWGCWC 1 cut(s) 275
BslI CCNNNNNNNGG 2 cut(s) 410, 411
BsnI GGCC 1 cut(s) 146
Bsp1286I GDGCHC 1 cut(s) 275
Bsp143I GATC 2 cut(s) 31, 400
BspACI CCGC 2 cut(s) 83, 130
BspANI GGCC 1 cut(s) 146
BspFNI CGCG 2 cut(s) 130, 297
BspLI GGNNCC 1 cut(s) 147
BspMI ACCTGC 1 cut(s) 193
BspPI GGATC 2 cut(s) 26, 395
BsrDI GCAATG 1 cut(s) 111
BsrI ACTGG 1 cut(s) 147
BssMI GATC 2 cut(s) 31, 400
BstC8I GCNNGC 1 cut(s) 227
BstFNI CGCG 2 cut(s) 130, 297
BstHHI GCGC 1 cut(s) 299
BstKTI GATC 2 cut(s) 34, 403
BstMBI GATC 2 cut(s) 31, 400
BstMWI GCNNNNNNNGC 1 cut(s) 163
BstSFI CTRYAG 1 cut(s) 220
BstUI CGCG 2 cut(s) 130, 297
BstV1I GCAGC 3 cut(s) 201, 241, 421
BstX2I RGATCY 2 cut(s) 31, 400
BstYI RGATCY 2 cut(s) 31, 400
BsuI GTATCC 1 cut(s) 354
BsuRI GGCC 1 cut(s) 146
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 2 cut(s) 140, 171
BveI ACCTGC 1 cut(s) 193
Cac8I GCNNGC 1 cut(s) 227
CfoI GCGC 1 cut(s) 299
Cfr13I GGNCC 1 cut(s) 145
Csp6I GTAC 1 cut(s) 368
CviAII CATG 1 cut(s) 195
CviJI RGCY 9 cut(s) 5, 18, 133, 146, 214, 225, 232, 307, 324
CviKI_1 RGCY 9 cut(s) 5, 18, 133, 146, 214, 225, 232, 307, 324
CviQI GTAC 1 cut(s) 368
DpnI GATC 2 cut(s) 33, 402
DpnII GATC 2 cut(s) 31, 400
EciI GGCGGA 1 cut(s) 72
FaeI CATG 1 cut(s) 198
FaiI YATR 2 cut(s) 179, 196
FatI CATG 1 cut(s) 194
FblI GTMKAC 1 cut(s) 333
Fnu4HI GCNGC 4 cut(s) 131, 215, 230, 435
Fsp4HI GCNGC 4 cut(s) 131, 215, 230, 435
FspBI CTAG 2 cut(s) 381, 390
GlaI GCGC 1 cut(s) 298
GluI GCNGC 4 cut(s) 131, 215, 230, 435
GsuI CTGGAG 1 cut(s) 287
HaeIII GGCC 1 cut(s) 146
HhaI GCGC 1 cut(s) 299
Hin1II CATG 1 cut(s) 198
Hin6I GCGC 1 cut(s) 297
HinP1I GCGC 1 cut(s) 297
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HinfI GANTC 1 cut(s) 55
HphI GGTGA 2 cut(s) 174, 378
Hpy166II GTNNAC 2 cut(s) 334, 386
Hpy188III TCNNGA 2 cut(s) 29, 398
Hpy8I GTNNAC 2 cut(s) 334, 386
HpyAV CCTTC 2 cut(s) 89, 335
HpyCH4V TGCA 4 cut(s) 123, 166, 188, 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 163
Hsp92II CATG 1 cut(s) 198
HspAI GCGC 1 cut(s) 297
Kzo9I GATC 2 cut(s) 31, 400
Lsp1109I GCAGC 3 cut(s) 201, 241, 421
MaeI CTAG 2 cut(s) 381, 390
MaeIII GTNAC 2 cut(s) 52, 200
MalI GATC 2 cut(s) 33, 402
MboI GATC 2 cut(s) 31, 400
MboII GAAGA 1 cut(s) 128
MfeI CAATTG 1 cut(s) 447
MflI RGATCY 2 cut(s) 31, 400
MhlI GDGCHC 1 cut(s) 275
MluCI AATT 2 cut(s) 439, 447
MlyI GAGTC 1 cut(s) 49
MnlI CCTC 6 cut(s) 58, 74, 104, 218, 387, 417
MslI CAYNNNNRTG 1 cut(s) 193
MunI CAATTG 1 cut(s) 447
MvnI CGCG 2 cut(s) 130, 297
MwoI GCNNNNNNNGC 1 cut(s) 163
NdeII GATC 2 cut(s) 31, 400
NlaIII CATG 1 cut(s) 198
NlaIV GGNNCC 1 cut(s) 147
NmuCI GTSAC 2 cut(s) 52, 200
PaqCI CACCTGC 1 cut(s) 193
PkrI GCNGC 4 cut(s) 132, 216, 231, 436
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 1 cut(s) 145
PsuI RGATCY 2 cut(s) 31, 400
RsaI GTAC 1 cut(s) 369
RsaNI GTAC 1 cut(s) 368
RseI CAYNNNNRTG 1 cut(s) 193
SalI GTCGAC 1 cut(s) 332
SatI GCNGC 4 cut(s) 131, 215, 230, 435
Sau3AI GATC 2 cut(s) 31, 400
Sau96I GGNCC 1 cut(s) 145
SchI GAGTC 1 cut(s) 49
SduI GDGCHC 1 cut(s) 275
SetI ASST 8 cut(s) 20, 187, 210, 216, 309, 367, 373, 391
SfcI CTRYAG 1 cut(s) 220
SmiMI CAYNNNNRTG 1 cut(s) 193
SmlI CTYRAG 2 cut(s) 209, 396
SmoI CTYRAG 2 cut(s) 209, 396
Sse9I AATT 2 cut(s) 439, 447
SsiI CCGC 2 cut(s) 83, 130
SspMI CTAG 2 cut(s) 381, 390
TaqI TCGA 1 cut(s) 333
TasI AATT 2 cut(s) 439, 447
TauI GCSGC 1 cut(s) 133
TscAI CASTG 2 cut(s) 147, 178
TseFI GTSAC 2 cut(s) 52, 200
TseI GCWGC 3 cut(s) 214, 229, 434
Tsp45I GTSAC 2 cut(s) 52, 200
TspRI CASTG 2 cut(s) 147, 178
XmiI GTMKAC 1 cut(s) 333
XspI CTAG 2 cut(s) 381, 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.