Prupe.5G220400_v2.0.a1

Probable lipid transfer

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0016222
Physical Location & Seq
Forward (+)
17176317 .. 17177903
1587 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G220400.1

Sequence Viewer

Length: 615 bp
ATGGCTTCTCTTCACAGCTCTCTGCTTCAACATCCTTTTGCCCTTTCCTCTCTGACTCTGCTACTTTTTCTCATTTCCCTTCCACCATCCATCCTTTCACAAGACCCCAGCTCCTCAAGCCCTACCATTGCTCAATGCACCACACGGCTTCTTCCACTGGCCTCGTGTGCATCGTTTGTGCAAGGCACTTCCCAATCTCCGGCACAATCATGTTGTGACAACCTCAAGCTGCTCTATAGCCAGCAGCCAGACTGCCTTTGCCTTTTGCTCAATAGCACTACTTTGAGCTCCTTCCCTATCAACACCACACGTGCTCTTCAGCTGCCTGCTCTTTGCAGCCTTCAAGTTGACATCTCTGCTTGTTCAGGGGTACATGTGCCTCCTAGCACACCTAGTTCTCAAGTTTCCTTTGGGACAAACACCAACTCAACTGCTGTTAACTCTACCATTGCTGCCTCTCCAATGCCTCTAAATGCACCAAGACCCAGCATGATGGGGTTAGGATTTGGCAGAACTTCAAGTGCTGGCACCAAATTGAAGATGGGCAGTTACCTCACGGTGGCGGCGCTGGCTATGGGAGGTTTTCTAGTGTCTGGAGTTCTATTTTCAGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2

Protein Analysis

205

Amino Acids

21.06

Weight (kDa)

8.49

Isoelectric Point (pI)

62.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016222)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73890
fragaria_vesca FvH4_5g12310
malus_domestica MD06G1215100.v1.1 MD14G1225900.v1.1
prunus_persica Prupe.5G220400_v2.0.a1
pyrus_communis pycom06g19170
rosa_chinensis RchiOBHm_Chr7g0185251
rosa_laevigata RLG00000004927
rosa_roxburghii Rroxscaffold_3G00269110
rosa_rugosa Rorug06G0467300
rosa_samantha Rh7AG075500 Rh7BG071800 Rh7CG073000 Rh7DG072400
rosa_wichuraiana Rw7G006020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 527
AciI CCGC 1 cut(s) 563
AcuI CTGAAG 1 cut(s) 302
AcvI CACGTG 1 cut(s) 311
AfaI GTAC 1 cut(s) 372
AfiI CCNNNNNNNGG 2 cut(s) 199, 559
AflIII ACRYGT 2 cut(s) 308, 373
AgsI TTSAA 4 cut(s) 29, 344, 519, 538
AluBI AGCT 5 cut(s) 18, 111, 229, 288, 322
AluI AGCT 5 cut(s) 18, 111, 229, 288, 322
Alw21I GWGCWC 2 cut(s) 290, 316
AoxI GGCC 1 cut(s) 159
ApeKI GCWGC 5 cut(s) 229, 244, 322, 336, 452
AspLEI GCGC 1 cut(s) 568
BanI GGYRCC 1 cut(s) 527
BanII GRGCYC 1 cut(s) 290
BauI CACGAG 1 cut(s) 163
BbrPI CACGTG 1 cut(s) 311
Bbv12I GWGCWC 2 cut(s) 290, 316
BbvI GCAGC 5 cut(s) 216, 256, 309, 348, 439
BccI CCATC 4 cut(s) 94, 98, 487, 535
BceAI ACGGC 1 cut(s) 161
BfaI CTAG 3 cut(s) 384, 393, 587
BfmI CTRYAG 1 cut(s) 235
BfoI RGCGCY 1 cut(s) 569
BisI GCNGC 6 cut(s) 230, 245, 323, 337, 453, 564
BlsI GCNGC 6 cut(s) 231, 246, 324, 338, 454, 565
BmiI GGNNCC 1 cut(s) 529
BmsI GCATC 1 cut(s) 179
BpmI CTGGAG 1 cut(s) 615
BpuEI CTTGAG 3 cut(s) 100, 209, 384
BsaAI YACGTR 1 cut(s) 311
BsaXI ACNNNNNCTCC 2 cut(s) 95, 125
Bsc4I CCNNNNNNNGG 2 cut(s) 199, 559
Bse1I ACTGG 1 cut(s) 162
Bse3DI GCAATG 2 cut(s) 126, 447
BseGI GGATG 3 cut(s) 31, 86, 90
BseLI CCNNNNNNNGG 2 cut(s) 199, 559
BseMI GCAATG 2 cut(s) 126, 447
BseNI ACTGG 1 cut(s) 162
BseRI GAGGAG 1 cut(s) 103
BseXI GCAGC 5 cut(s) 216, 256, 309, 348, 439
BseYI CCCAGC 2 cut(s) 107, 485
BshFI GGCC 1 cut(s) 161
BshNI GGYRCC 1 cut(s) 527
BsiHKAI GWGCWC 2 cut(s) 290, 316
BsiSI CCGG 1 cut(s) 200
BslFI GGGAC 1 cut(s) 427
BslI CCNNNNNNNGG 2 cut(s) 199, 559
BsmFI GGGAC 1 cut(s) 427
BsnI GGCC 1 cut(s) 161
Bsp1286I GDGCHC 2 cut(s) 290, 316
BspACI CCGC 1 cut(s) 563
BspANI GGCC 1 cut(s) 161
BspLI GGNNCC 1 cut(s) 529
BspQI GCTCTTC 1 cut(s) 321
BspT107I GGYRCC 1 cut(s) 527
BsrDI GCAATG 2 cut(s) 126, 447
BsrI ACTGG 1 cut(s) 162
BssSI CACGAG 1 cut(s) 163
Bst2BI CACGAG 1 cut(s) 163
Bst4CI ACNGT 1 cut(s) 559
Bst6I CTCTTC 2 cut(s) 15, 321
BstBAI YACGTR 1 cut(s) 311
BstC8I GCNNGC 4 cut(s) 242, 327, 526, 570
BstF5I GGATG 3 cut(s) 31, 86, 90
BstH2I RGCGCY 1 cut(s) 569
BstHHI GCGC 1 cut(s) 568
BstMWI GCNNNNNNNGC 3 cut(s) 117, 167, 569
BstNSI RCATGY 1 cut(s) 377
BstSFI CTRYAG 1 cut(s) 235
BstV1I GCAGC 5 cut(s) 216, 256, 309, 348, 439
BstXI CCANNNNNNTGG 1 cut(s) 493
BsuRI GGCC 1 cut(s) 161
BtsCI GGATG 3 cut(s) 31, 86, 90
BtsIMutI CAGTG 1 cut(s) 155
Cac8I GCNNGC 4 cut(s) 242, 327, 526, 570
CfoI GCGC 1 cut(s) 568
Csp6I GTAC 1 cut(s) 371
CviAII CATG 3 cut(s) 210, 374, 490
CviQI GTAC 1 cut(s) 371
Eam1104I CTCTTC 2 cut(s) 15, 321
EarI CTCTTC 2 cut(s) 15, 321
Ecl136II GAGCTC 1 cut(s) 288
Eco24I GRGCYC 1 cut(s) 290
Eco53kI GAGCTC 1 cut(s) 288
Eco57I CTGAAG 1 cut(s) 302
Eco72I CACGTG 1 cut(s) 311
EcoICRI GAGCTC 1 cut(s) 288
EcoT38I GRGCYC 1 cut(s) 290
FaeI CATG 3 cut(s) 213, 377, 493
FaiI YATR 6 cut(s) 211, 237, 375, 491, 575, 613
FaqI GGGAC 1 cut(s) 427
FatI CATG 3 cut(s) 209, 373, 489
Fnu4HI GCNGC 6 cut(s) 230, 245, 323, 337, 453, 564
FokI GGATG 3 cut(s) 18, 73, 77
FriOI GRGCYC 1 cut(s) 290
Fsp4HI GCNGC 6 cut(s) 230, 245, 323, 337, 453, 564
FspBI CTAG 3 cut(s) 384, 393, 587
GlaI GCGC 1 cut(s) 567
GluI GCNGC 6 cut(s) 230, 245, 323, 337, 453, 564
GsaI CCCAGC 2 cut(s) 111, 489
GsuI CTGGAG 1 cut(s) 615
HaeII RGCGCY 1 cut(s) 569
HaeIII GGCC 1 cut(s) 161
HapII CCGG 1 cut(s) 200
HhaI GCGC 1 cut(s) 568
Hin1II CATG 3 cut(s) 213, 377, 493
Hin6I GCGC 1 cut(s) 566
HinP1I GCGC 1 cut(s) 566
HincII GTYRAC 2 cut(s) 349, 439
HindII GTYRAC 2 cut(s) 349, 439
HinfI GANTC 1 cut(s) 55
HpaI GTTAAC 1 cut(s) 439
HpaII CCGG 1 cut(s) 200
Hpy166II GTNNAC 2 cut(s) 349, 439
Hpy188I TCNGA 1 cut(s) 54
Hpy188III TCNNGA 1 cut(s) 594
Hpy8I GTNNAC 2 cut(s) 349, 439
HpyAV CCTTC 3 cut(s) 89, 301, 350
HpyCH4III ACNGT 1 cut(s) 559
HpyCH4IV ACGT 1 cut(s) 310
HpyCH4V TGCA 5 cut(s) 138, 170, 181, 336, 476
HpyF10VI GCNNNNNNNGC 3 cut(s) 117, 167, 569
HpySE526I ACGT 1 cut(s) 310
Hsp92II CATG 3 cut(s) 213, 377, 493
HspAI GCGC 1 cut(s) 566
KspAI GTTAAC 1 cut(s) 439
LguI GCTCTTC 1 cut(s) 321
LmnI GCTCC 2 cut(s) 116, 293
Lsp1109I GCAGC 5 cut(s) 216, 256, 309, 348, 439
LweI GCATC 1 cut(s) 179
MaeI CTAG 3 cut(s) 384, 393, 587
MaeII ACGT 1 cut(s) 310
MaeIII GTNAC 2 cut(s) 215, 548
MboII GAAGA 3 cut(s) 143, 308, 550
MhlI GDGCHC 2 cut(s) 290, 316
MluCI AATT 1 cut(s) 533
MlyI GAGTC 1 cut(s) 49
MnlI CCTC 9 cut(s) 58, 124, 172, 233, 390, 466, 477, 563, 572
MseI TTAA 1 cut(s) 438
MslI CAYNNNNRTG 1 cut(s) 208
MspA1I CMGCKG 1 cut(s) 322
MspI CCGG 1 cut(s) 200
MwoI GCNNNNNNNGC 3 cut(s) 117, 167, 569
NlaIII CATG 3 cut(s) 213, 377, 493
NlaIV GGNNCC 1 cut(s) 529
NmuCI GTSAC 1 cut(s) 215
NspI RCATGY 1 cut(s) 377
PciI ACATGT 1 cut(s) 373
PciSI GCTCTTC 1 cut(s) 321
PcsI WCGNNNNNNNCGW 1 cut(s) 170
PkrI GCNGC 6 cut(s) 231, 246, 324, 338, 454, 565
PleI GAGTC 1 cut(s) 49
PmaCI CACGTG 1 cut(s) 311
PmlI CACGTG 1 cut(s) 311
PpsI GAGTC 1 cut(s) 49
Ppu21I YACGTR 1 cut(s) 311
PscI ACATGT 1 cut(s) 373
Psp124BI GAGCTC 1 cut(s) 290
PspCI CACGTG 1 cut(s) 311
PspFI CCCAGC 2 cut(s) 107, 485
PspN4I GGNNCC 1 cut(s) 529
PvuII CAGCTG 1 cut(s) 322
RsaI GTAC 1 cut(s) 372
RsaNI GTAC 1 cut(s) 371
RseI CAYNNNNRTG 1 cut(s) 208
SacI GAGCTC 1 cut(s) 290
SapI GCTCTTC 1 cut(s) 321
SaqAI TTAA 1 cut(s) 438
SatI GCNGC 6 cut(s) 230, 245, 323, 337, 453, 564
SchI GAGTC 1 cut(s) 49
SduI GDGCHC 2 cut(s) 290, 316
SfaNI GCATC 1 cut(s) 179
SfcI CTRYAG 1 cut(s) 235
SmiMI CAYNNNNRTG 1 cut(s) 208
SmlI CTYRAG 3 cut(s) 115, 224, 399
SmoI CTYRAG 3 cut(s) 115, 224, 399
Sse9I AATT 1 cut(s) 533
SsiI CCGC 1 cut(s) 563
SspMI CTAG 3 cut(s) 384, 393, 587
SstI GAGCTC 1 cut(s) 290
TaaI ACNGT 1 cut(s) 559
TaiI ACGT 1 cut(s) 313
TasI AATT 1 cut(s) 533
TauI GCSGC 1 cut(s) 566
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TscAI CASTG 1 cut(s) 162
TseFI GTSAC 1 cut(s) 215
TseI GCWGC 5 cut(s) 229, 244, 322, 336, 452
Tsp45I GTSAC 1 cut(s) 215
TspRI CASTG 1 cut(s) 162
XceI RCATGY 1 cut(s) 377
XcmI CCANNNNNNNNNTGG 1 cut(s) 538
XspI CTAG 3 cut(s) 384, 393, 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.