pycom06g19170

Probable lipid transfer

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
Physical Location & Seq
Forward (+)
22639248 .. 22640164
917 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g19170.1

Sequence Viewer

Length: 606 bp
ATGGCTTCCCCTAACAGCTCTCTGCTTCAAGATCCTTTCTCCATTTCCTCTCTGACTCTACTCCTCTTTCTCGTTTCCCTTCCGCCACCCGTCCTCTCACAAAACCCTACCATTGCTCAATGCACCACGCAGCTTCTTCCACTGGCCCCATGTGTGCCGTTCGTGCAAGGCATTGGCATGTCGCCCGCACAATCATGCTGTGACAACCTCAAGCTGCTCTACAGCCAGCAGCCAGAGTGCCTTTGCCTTTTCCTCAACGATACTACCGTGAGCACATTCCCTATCAACACCACTCGTGCTCTCCAGCTTCCCGTTGTTTGTAGCCTTCAAGTCAACATCTCTACTTGTTCGGGTGCAGGGATACCTGTACTTGTGCCTTCTAGTTCACCTAGTTCTCAAGATCCCCCTCTGGGGAAAAACACCAACTCATCTGCTGCTAATTCTACAATTGCTGCCACTCCAATGCCTCAAACTGCACCAATACCCAAAACGATGGGGTTAGGGTTTAGCAGAACTGCAAATGCTGGGACCAAATTGAAGATGGGAAGTTATCTTGCAGTGGCTTTCGCTGTGGCAGGTTTTCCAGTGGCAGGCGTTCCATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

202

Amino Acids

20.74

Weight (kDa)

8.14

Isoelectric Point (pI)

69.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 32 - 116 2.7e-15 Probable lipid transfer
Tryp_alpha_amyl PF00234 41 - 113 7.5e-09 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016222)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73890
fragaria_vesca FvH4_5g12310
malus_domestica MD06G1215100.v1.1 MD14G1225900.v1.1
prunus_persica Prupe.5G220400_v2.0.a1
pyrus_communis pycom06g19170
rosa_chinensis RchiOBHm_Chr7g0185251
rosa_laevigata RLG00000004927
rosa_roxburghii Rroxscaffold_3G00269110
rosa_rugosa Rorug06G0467300
rosa_samantha Rh7AG075500 Rh7BG071800 Rh7CG073000 Rh7DG072400
rosa_wichuraiana Rw7G006020

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 566
AciI CCGC 2 cut(s) 83, 186
AclWI GGATC 2 cut(s) 26, 395
AfaI GTAC 1 cut(s) 369
AfiI CCNNNNNNNGG 3 cut(s) 410, 411, 590
AgsI TTSAA 3 cut(s) 29, 329, 538
AluBI AGCT 4 cut(s) 18, 133, 214, 307
AluI AGCT 4 cut(s) 18, 133, 214, 307
Alw21I GWGCWC 2 cut(s) 275, 301
AlwI GGATC 2 cut(s) 26, 395
AoxI GGCC 1 cut(s) 144
ApeKI GCWGC 5 cut(s) 130, 214, 229, 434, 452
AspS9I GGNCC 2 cut(s) 145, 528
AsuHPI GGTGA 1 cut(s) 378
AvaII GGWCC 1 cut(s) 528
BaeI ACNNNNGTAYC 2 cut(s) 252, 285
BauI CACGAG 1 cut(s) 294
Bbv12I GWGCWC 2 cut(s) 275, 301
BbvI GCAGC 5 cut(s) 142, 201, 241, 421, 439
BccI CCATC 2 cut(s) 487, 535
BceAI ACGGC 1 cut(s) 142
BciVI GTATCC 1 cut(s) 354
BfaI CTAG 2 cut(s) 381, 390
BfmI CTRYAG 1 cut(s) 220
BfuAI ACCTGC 1 cut(s) 566
BfuI GTATCC 1 cut(s) 354
BisI GCNGC 5 cut(s) 131, 215, 230, 435, 453
BlsI GCNGC 5 cut(s) 132, 216, 231, 436, 454
Bme18I GGWCC 1 cut(s) 528
BmgT120I GGNCC 2 cut(s) 145, 528
BmiI GGNNCC 2 cut(s) 147, 529
BpmI CTGGAG 1 cut(s) 287
BpuEI CTTGAG 2 cut(s) 194, 381
Bsc4I CCNNNNNNNGG 3 cut(s) 410, 411, 590
Bse1I ACTGG 2 cut(s) 147, 584
Bse3DI GCAATG 1 cut(s) 111
BseLI CCNNNNNNNGG 3 cut(s) 410, 411, 590
BseMI GCAATG 1 cut(s) 111
BseNI ACTGG 2 cut(s) 147, 584
BseRI GAGGAG 1 cut(s) 53
BseXI GCAGC 5 cut(s) 142, 201, 241, 421, 439
BseYI CCCAGC 1 cut(s) 524
BsgI GTGCAG 2 cut(s) 375, 459
BshFI GGCC 1 cut(s) 146
BsiHKAI GWGCWC 2 cut(s) 275, 301
BslFI GGGAC 1 cut(s) 541
BslI CCNNNNNNNGG 3 cut(s) 410, 411, 590
BsmFI GGGAC 1 cut(s) 541
BsnI GGCC 1 cut(s) 146
Bsp1286I GDGCHC 2 cut(s) 275, 301
Bsp143I GATC 2 cut(s) 31, 400
BspACI CCGC 2 cut(s) 83, 186
BspANI GGCC 1 cut(s) 146
BspLI GGNNCC 2 cut(s) 147, 529
BspMI ACCTGC 1 cut(s) 566
BspPI GGATC 2 cut(s) 26, 395
BsrDI GCAATG 1 cut(s) 111
BsrI ACTGG 2 cut(s) 147, 584
BssMI GATC 2 cut(s) 31, 400
BssSI CACGAG 1 cut(s) 294
Bst2BI CACGAG 1 cut(s) 294
Bst4CI ACNGT 1 cut(s) 268
BstC8I GCNNGC 3 cut(s) 186, 227, 592
BstKTI GATC 2 cut(s) 34, 403
BstMBI GATC 2 cut(s) 31, 400
BstMWI GCNNNNNNNGC 1 cut(s) 163
BstNSI RCATGY 1 cut(s) 181
BstSFI CTRYAG 1 cut(s) 220
BstV1I GCAGC 5 cut(s) 142, 201, 241, 421, 439
BstX2I RGATCY 2 cut(s) 31, 400
BstXI CCANNNNNNTGG 1 cut(s) 493
BstYI RGATCY 2 cut(s) 31, 400
BsuI GTATCC 1 cut(s) 354
BsuRI GGCC 1 cut(s) 146
BtsI GCAGTG 1 cut(s) 564
BtsIMutI CAGTG 3 cut(s) 140, 564, 591
BveI ACCTGC 1 cut(s) 566
Cac8I GCNNGC 3 cut(s) 186, 227, 592
Cfr13I GGNCC 2 cut(s) 145, 528
Csp6I GTAC 1 cut(s) 368
CviAII CATG 3 cut(s) 150, 178, 195
CviQI GTAC 1 cut(s) 368
DpnI GATC 2 cut(s) 33, 402
DpnII GATC 2 cut(s) 31, 400
EciI GGCGGA 1 cut(s) 72
Eco47I GGWCC 1 cut(s) 528
FaeI CATG 3 cut(s) 153, 181, 198
FaiI YATR 3 cut(s) 151, 179, 196
FaqI GGGAC 1 cut(s) 541
FatI CATG 3 cut(s) 149, 177, 194
FauI CCCGC 1 cut(s) 193
Fnu4HI GCNGC 5 cut(s) 131, 215, 230, 435, 453
Fsp4HI GCNGC 5 cut(s) 131, 215, 230, 435, 453
FspBI CTAG 2 cut(s) 381, 390
GluI GCNGC 5 cut(s) 131, 215, 230, 435, 453
GsaI CCCAGC 1 cut(s) 528
GsuI CTGGAG 1 cut(s) 287
HaeIII GGCC 1 cut(s) 146
Hin1II CATG 3 cut(s) 153, 181, 198
HincII GTYRAC 1 cut(s) 334
HindII GTYRAC 1 cut(s) 334
HinfI GANTC 1 cut(s) 55
HphI GGTGA 1 cut(s) 378
Hpy166II GTNNAC 2 cut(s) 334, 386
Hpy188I TCNGA 1 cut(s) 54
Hpy188III TCNNGA 2 cut(s) 29, 398
Hpy8I GTNNAC 2 cut(s) 334, 386
HpyAV CCTTC 3 cut(s) 89, 335, 387
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4V TGCA 6 cut(s) 123, 166, 356, 476, 518, 557
HpyF10VI GCNNNNNNNGC 1 cut(s) 163
Hsp92II CATG 3 cut(s) 153, 181, 198
Kzo9I GATC 2 cut(s) 31, 400
Lsp1109I GCAGC 5 cut(s) 142, 201, 241, 421, 439
MaeI CTAG 2 cut(s) 381, 390
MaeIII GTNAC 1 cut(s) 200
MalI GATC 2 cut(s) 33, 402
MboI GATC 2 cut(s) 31, 400
MboII GAAGA 2 cut(s) 128, 550
MfeI CAATTG 1 cut(s) 447
MflI RGATCY 2 cut(s) 31, 400
MhlI GDGCHC 2 cut(s) 275, 301
MluCI AATT 3 cut(s) 439, 447, 533
MlyI GAGTC 1 cut(s) 49
MnlI CCTC 7 cut(s) 58, 74, 104, 218, 263, 417, 477
MseI TTAA 1 cut(s) 604
MslI CAYNNNNRTG 3 cut(s) 176, 193, 461
MunI CAATTG 1 cut(s) 447
MwoI GCNNNNNNNGC 1 cut(s) 163
NdeII GATC 2 cut(s) 31, 400
NlaIII CATG 3 cut(s) 153, 181, 198
NlaIV GGNNCC 2 cut(s) 147, 529
NmuCI GTSAC 1 cut(s) 200
NspI RCATGY 1 cut(s) 181
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PkrI GCNGC 5 cut(s) 132, 216, 231, 436, 454
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
PspFI CCCAGC 1 cut(s) 524
PspN4I GGNNCC 2 cut(s) 147, 529
PspPI GGNCC 2 cut(s) 145, 528
PsuI RGATCY 2 cut(s) 31, 400
RsaI GTAC 1 cut(s) 369
RsaNI GTAC 1 cut(s) 368
RseI CAYNNNNRTG 3 cut(s) 176, 193, 461
SaqAI TTAA 1 cut(s) 604
SatI GCNGC 5 cut(s) 131, 215, 230, 435, 453
Sau3AI GATC 2 cut(s) 31, 400
Sau96I GGNCC 2 cut(s) 145, 528
SchI GAGTC 1 cut(s) 49
SduI GDGCHC 2 cut(s) 275, 301
SetI ASST 8 cut(s) 20, 135, 210, 216, 309, 367, 391, 580
SfcI CTRYAG 1 cut(s) 220
SinI GGWCC 1 cut(s) 528
SmiMI CAYNNNNRTG 3 cut(s) 176, 193, 461
SmlI CTYRAG 2 cut(s) 209, 396
SmoI CTYRAG 2 cut(s) 209, 396
Sse9I AATT 3 cut(s) 439, 447, 533
SsiI CCGC 2 cut(s) 83, 186
SspMI CTAG 2 cut(s) 381, 390
TaaI ACNGT 1 cut(s) 268
TasI AATT 3 cut(s) 439, 447, 533
TatI WGTACW 1 cut(s) 367
Tru1I TTAA 1 cut(s) 604
Tru9I TTAA 1 cut(s) 604
TscAI CASTG 3 cut(s) 147, 564, 591
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 5 cut(s) 130, 214, 229, 434, 452
Tsp45I GTSAC 1 cut(s) 200
TspRI CASTG 3 cut(s) 147, 564, 591
VpaK11BI GGWCC 1 cut(s) 528
XceI RCATGY 1 cut(s) 181
XcmI CCANNNNNNNNNTGG 1 cut(s) 538
XspI CTAG 2 cut(s) 381, 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.