AT1G74070

peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016034
Physical Location & Seq
Reverse (-)
27851460 .. 27853269
1810 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G74070.1

Sequence Viewer

Length: 954 bp
ATGATGCAACCCAATGCAAAACTTTTGTCCCCATCCGCTAAATTTCTACCGTCACCTATAGAGCCACCGCAACACAACCGTAGAACCACCGTAGGAGCACCTCCGTCATTGGAACGAAACTGCAAATTATCGCGACGGAATCTTAGTAAATCCTCGTTGCTTCTACTCCTCACCACTCAAACAACTCTGACGCCATTGCTCGACTTCTCTAAAGCTCAAGCAGATACAATTGCTAACCCTAATCTCACAAATTGCGAAAACAGAATTCCGACTAAGAAAGCGTTCATCGACGTGTCAATCGACGGCGAACCAATCGGGAGGATCATAATCGGATTATACGGAGACGATGTACCGGCGGGAACAGCTAGATTCAGTAGCATTGTAAGCGGGAAAGCTGGAATTACTTACCGGAGAAAAGATTTTGTGAAGATTATGCCAGGTTATGTCCAACACGGCGGAATTAGATCGTACGGTGTCGATGCCGAGCGTGCCACCGCCGCGGTGGGGAGTCTCCAAAACCTAATTGAAGAGTGGGAGAGAGGGAAGAGAGGAGAGATATGTAATGTAAATAAGGCGGGAAGCGTTGGAATCGTGGTGAGAGATCCGTCGAAACCGCCGCCGAAGACGAAGCTTGTGGCAAGGAATGGGAAGCTTGTGGTCGAAGAAGAGGTAATTGCGGTGGGGCCAAACGGAACGGAGTTTGTTATAACGGCGGTTGATTCGCCGGAGCTGGAGGATTCGGTTTTGGTGATTGGGAAAGTTTTGGAAGGAATGGGAGTTGTTGAGAAGATGAGAGAAGTGAAGACTGTGAGGGATAACACTTCATCTCCTTATTTCAGGGTGGCTAAAGTGATCGGAGATAAGAGAGCTGTGGTGGCGGAGAGAGGGTTTAACCGGCCTTATTCTAAGGTTGTAGTCACCAATTGTGGTTTGATCGAGTCACAAACTCTATGA

Protein Analysis

317

Amino Acids

34.37

Weight (kDa)

9.51

Isoelectric Point (pI)

39.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 96 - 277 5.5e-13 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016034)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74070 AT1G74070
fragaria_vesca FvH4_5g12840
malus_domestica MD14G1220500.v1.1
prunus_persica Prupe.5G215800_v2.0.a1 Prupe.5G215800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0184401
rosa_laevigata RLG00000004979
rosa_multiflora Rmu_sc0001557.1_g000019
rosa_roxburghii Rroxscaffold_3G00269660
rosa_samantha Rh7AG080300 Rh7BG066900 Rh7CG067200 Rh7DG066900
rosa_wichuraiana Rw7G005500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 707
AccII CGCG 2 cut(s) 133, 500
AclWI GGATC 2 cut(s) 329, 596
AcsI RAATTY 2 cut(s) 41, 264
AcyI GRCGYC 1 cut(s) 191
AfaI GTAC 2 cut(s) 351, 470
AfiI CCNNNNNNNGG 1 cut(s) 504
AflIII ACRYGT 1 cut(s) 291
AgsI TTSAA 1 cut(s) 527
AjiI CACGTC 1 cut(s) 292
AjnI CCWGG 1 cut(s) 436
AluBI AGCT 7 cut(s) 215, 365, 395, 631, 652, 730, 869
AluI AGCT 7 cut(s) 215, 365, 395, 631, 652, 730, 869
Alw21I GWGCWC 1 cut(s) 100
Alw26I GTCTC 2 cut(s) 336, 515
AlwI GGATC 2 cut(s) 329, 596
AoxI GGCC 2 cut(s) 683, 896
ApoI RAATTY 2 cut(s) 41, 264
ArsI GACNNNNNNTTYG 2 cut(s) 11, 43
Asp700I GAANNNNTTC 1 cut(s) 281
AspS9I GGNCC 1 cut(s) 683
AsuHPI GGTGA 5 cut(s) 45, 163, 607, 760, 910
BbsI GAAGAC 2 cut(s) 629, 809
Bbv12I GWGCWC 1 cut(s) 100
BccI CCATC 1 cut(s) 40
BceAI ACGGC 3 cut(s) 319, 469, 726
BciT130I CCWGG 1 cut(s) 438
BcoDI GTCTC 2 cut(s) 336, 515
BfaI CTAG 1 cut(s) 366
BfmI CTRYAG 1 cut(s) 57
BisI GCNGC 2 cut(s) 498, 617
BlsI GCNGC 2 cut(s) 499, 618
Bme1390I CCNGG 1 cut(s) 438
BmgBI CACGTC 1 cut(s) 292
BmgT120I GGNCC 1 cut(s) 683
BmiI GGNNCC 1 cut(s) 684
BmrFI CCNGG 1 cut(s) 438
BmsI GCATC 1 cut(s) 469
BpiI GAAGAC 2 cut(s) 629, 809
BpmI CTGGAG 1 cut(s) 752
BpuEI CTTGAG 1 cut(s) 201
BsaBI GATNNNNATC 1 cut(s) 326
BsaHI GRCGYC 1 cut(s) 191
BsaJI CCNNGG 1 cut(s) 498
BsaWI WCCGGW 1 cut(s) 408
BsaXI ACNNNNNCTCC 6 cut(s) 333, 363, 811, 841, 872, 902
Bsc4I CCNNNNNNNGG 1 cut(s) 504
Bse118I RCCGGY 2 cut(s) 352, 894
Bse3DI GCAATG 1 cut(s) 194
Bse8I GATNNNNATC 1 cut(s) 326
BseBI CCWGG 1 cut(s) 438
BseDI CCNNGG 1 cut(s) 498
BseGI GGATG 1 cut(s) 32
BseJI GATNNNNATC 1 cut(s) 326
BseLI CCNNNNNNNGG 1 cut(s) 504
BseMI GCAATG 1 cut(s) 194
BseRI GAGGAG 2 cut(s) 158, 564
Bsh1236I CGCG 2 cut(s) 133, 500
BshFI GGCC 2 cut(s) 685, 898
BsiHKAI GWGCWC 1 cut(s) 100
BsiSI CCGG 4 cut(s) 353, 409, 725, 895
BsiWI CGTACG 1 cut(s) 468
BslFI GGGAC 1 cut(s) 13
BslI CCNNNNNNNGG 1 cut(s) 504
BsmAI GTCTC 2 cut(s) 336, 515
BsmBI CGTCTC 1 cut(s) 336
BsmFI GGGAC 1 cut(s) 13
BsnI GGCC 2 cut(s) 685, 898
Bsp1286I GDGCHC 1 cut(s) 100
Bsp143I GATC 5 cut(s) 321, 464, 601, 852, 933
Bsp68I TCGCGA 1 cut(s) 133
BspANI GGCC 2 cut(s) 685, 898
BspFNI CGCG 2 cut(s) 133, 500
BspLI GGNNCC 1 cut(s) 684
BspPI GGATC 2 cut(s) 329, 596
BsrDI GCAATG 1 cut(s) 194
BsrFI RCCGGY 2 cut(s) 352, 894
BssAI RCCGGY 2 cut(s) 352, 894
BssECI CCNNGG 1 cut(s) 498
BssMI GATC 5 cut(s) 321, 464, 601, 852, 933
BssNI GRCGYC 1 cut(s) 191
Bst2UI CCWGG 1 cut(s) 438
Bst4CI ACNGT 5 cut(s) 51, 80, 91, 473, 808
Bst6I CTCTTC 3 cut(s) 522, 539, 660
BstACI GRCGYC 1 cut(s) 191
BstC8I GCNNGC 1 cut(s) 489
BstDEI CTNAG 3 cut(s) 143, 273, 906
BstDSI CCRYGG 1 cut(s) 498
BstF5I GGATG 1 cut(s) 32
BstFNI CGCG 2 cut(s) 133, 500
BstKTI GATC 5 cut(s) 324, 467, 604, 855, 936
BstMAI GTCTC 2 cut(s) 336, 515
BstMBI GATC 5 cut(s) 321, 464, 601, 852, 933
BstMWI GCNNNNNNNGC 5 cut(s) 362, 384, 488, 497, 875
BstNI CCWGG 1 cut(s) 438
BstSCI CCNGG 1 cut(s) 436
BstSFI CTRYAG 1 cut(s) 57
BstUI CGCG 2 cut(s) 133, 500
BstV2I GAAGAC 2 cut(s) 629, 809
BstX2I RGATCY 1 cut(s) 601
BstYI RGATCY 1 cut(s) 601
BsuRI GGCC 2 cut(s) 685, 898
BtgI CCRYGG 1 cut(s) 498
BtrI CACGTC 1 cut(s) 292
BtsCI GGATG 1 cut(s) 32
BtuMI TCGCGA 1 cut(s) 133
Cac8I GCNNGC 1 cut(s) 489
Cfr10I RCCGGY 2 cut(s) 352, 894
Cfr13I GGNCC 1 cut(s) 683
Cfr42I CCGCGG 1 cut(s) 501
CseI GACGC 1 cut(s) 199
Csp6I GTAC 2 cut(s) 350, 469
CviQI GTAC 2 cut(s) 350, 469
DdeI CTNAG 3 cut(s) 143, 273, 906
DpnI GATC 5 cut(s) 323, 466, 603, 854, 935
DpnII GATC 5 cut(s) 321, 464, 601, 852, 933
Eam1104I CTCTTC 3 cut(s) 522, 539, 660
EarI CTCTTC 3 cut(s) 522, 539, 660
EciI GGCGGA 2 cut(s) 471, 893
EcoRI GAATTC 1 cut(s) 264
EcoRII CCWGG 1 cut(s) 436
Esp3I CGTCTC 1 cut(s) 336
FaiI YATR 8 cut(s) 59, 326, 337, 434, 444, 559, 707, 952
FaqI GGGAC 1 cut(s) 13
FauI CCCGC 3 cut(s) 349, 380, 568
Fnu4HI GCNGC 2 cut(s) 498, 617
FokI GGATG 1 cut(s) 19
Fsp4HI GCNGC 2 cut(s) 498, 617
FspBI CTAG 1 cut(s) 366
GluI GCNGC 2 cut(s) 498, 617
GsuI CTGGAG 1 cut(s) 752
HaeIII GGCC 2 cut(s) 685, 898
HapII CCGG 4 cut(s) 353, 409, 725, 895
HgaI GACGC 1 cut(s) 199
Hin1I GRCGYC 1 cut(s) 191
HindIII AAGCTT 2 cut(s) 629, 650
HinfI GANTC 7 cut(s) 139, 369, 508, 588, 719, 737, 938
HpaII CCGG 4 cut(s) 353, 409, 725, 895
HphI GGTGA 5 cut(s) 45, 163, 607, 760, 910
Hpy188I TCNGA 4 cut(s) 189, 270, 332, 857
Hpy188III TCNNGA 2 cut(s) 132, 316
Hpy99I CGWCG 4 cut(s) 138, 293, 305, 610
HpyAV CCTTC 1 cut(s) 761
HpyCH4III ACNGT 5 cut(s) 51, 80, 91, 473, 808
HpyCH4IV ACGT 1 cut(s) 291
HpyCH4V TGCA 3 cut(s) 7, 17, 123
HpyF10VI GCNNNNNNNGC 5 cut(s) 362, 384, 488, 497, 875
HpyF3I CTNAG 3 cut(s) 143, 273, 906
HpySE526I ACGT 1 cut(s) 291
Hsp92I GRCGYC 1 cut(s) 191
KspI CCGCGG 1 cut(s) 501
Kzo9I GATC 5 cut(s) 321, 464, 601, 852, 933
LmnI GCTCC 2 cut(s) 95, 727
LpnPI CCDG 9 cut(s) 366, 381, 422, 423, 450, 716, 738, 823, 908
LweI GCATC 1 cut(s) 469
MaeI CTAG 1 cut(s) 366
MaeII ACGT 1 cut(s) 291
MaeIII GTNAC 3 cut(s) 51, 916, 939
MalI GATC 5 cut(s) 323, 466, 603, 854, 935
MboI GATC 5 cut(s) 321, 464, 601, 852, 933
MboII GAAGA 8 cut(s) 439, 539, 556, 634, 674, 677, 799, 814
MfeI CAATTG 2 cut(s) 228, 922
MflI RGATCY 1 cut(s) 601
MhlI GDGCHC 1 cut(s) 100
MlyI GAGTC 2 cut(s) 517, 947
MmeI TCCRAC 3 cut(s) 293, 472, 565
MroXI GAANNNNTTC 1 cut(s) 281
MseI TTAA 1 cut(s) 891
MslI CAYNNNNRTG 1 cut(s) 290
MspA1I CMGCKG 1 cut(s) 500
MspI CCGG 4 cut(s) 353, 409, 725, 895
MspR9I CCNGG 1 cut(s) 438
MunI CAATTG 2 cut(s) 228, 922
MvaI CCWGG 1 cut(s) 438
MvnI CGCG 2 cut(s) 133, 500
MwoI GCNNNNNNNGC 5 cut(s) 362, 384, 488, 497, 875
NdeII GATC 5 cut(s) 321, 464, 601, 852, 933
NlaIV GGNNCC 1 cut(s) 684
NmeAIII GCCGAG 1 cut(s) 508
NmuCI GTSAC 3 cut(s) 51, 916, 939
NruI TCGCGA 1 cut(s) 133
PcsI WCGNNNNNNNCGW 1 cut(s) 297
PdmI GAANNNNTTC 1 cut(s) 281
PfeI GAWTC 5 cut(s) 139, 369, 588, 719, 737
Pfl23II CGTACG 1 cut(s) 468
PkrI GCNGC 2 cut(s) 499, 618
PleI GAGTC 2 cut(s) 516, 946
PpsI GAGTC 2 cut(s) 516, 946
PsiI TTATAA 1 cut(s) 707
Psp6I CCWGG 1 cut(s) 436
PspGI CCWGG 1 cut(s) 436
PspLI CGTACG 1 cut(s) 468
PspN4I GGNNCC 1 cut(s) 684
PspPI GGNCC 1 cut(s) 683
PsuI RGATCY 1 cut(s) 601
RruI TCGCGA 1 cut(s) 133
RsaI GTAC 2 cut(s) 351, 470
RsaNI GTAC 2 cut(s) 350, 469
RseI CAYNNNNRTG 1 cut(s) 290
SacII CCGCGG 1 cut(s) 501
SaqAI TTAA 1 cut(s) 891
SatI GCNGC 2 cut(s) 498, 617
Sau3AI GATC 5 cut(s) 321, 464, 601, 852, 933
Sau96I GGNCC 1 cut(s) 683
SchI GAGTC 2 cut(s) 517, 947
ScrFI CCNGG 1 cut(s) 438
SduI GDGCHC 1 cut(s) 100
SfaNI GCATC 1 cut(s) 469
SfcI CTRYAG 1 cut(s) 57
Sfr303I CCGCGG 1 cut(s) 501
SgrBI CCGCGG 1 cut(s) 501
SmiMI CAYNNNNRTG 1 cut(s) 290
SmlI CTYRAG 1 cut(s) 216
SmoI CTYRAG 1 cut(s) 216
SspMI CTAG 1 cut(s) 366
StyD4I CCNGG 1 cut(s) 436
TaaI ACNGT 5 cut(s) 51, 80, 91, 473, 808
TaiI ACGT 1 cut(s) 294
TaqI TCGA 7 cut(s) 201, 288, 300, 477, 608, 660, 936
TauI GCSGC 2 cut(s) 500, 619
TfiI GAWTC 5 cut(s) 139, 369, 588, 719, 737
Tru1I TTAA 1 cut(s) 891
Tru9I TTAA 1 cut(s) 891
TseFI GTSAC 3 cut(s) 51, 916, 939
Tsp45I GTSAC 3 cut(s) 51, 916, 939
TspDTI ATGAA 2 cut(s) 274, 813
TspGWI ACGGA 6 cut(s) 93, 151, 354, 594, 705, 710
XapI RAATTY 2 cut(s) 41, 264
XcmI CCANNNNNNNNNTGG 1 cut(s) 499
XmnI GAANNNNTTC 1 cut(s) 281
XspI CTAG 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.