FvH4_5g12840

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0016034
Physical Location & Seq
Forward (+)
7257638 .. 7259448
1811 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g12840.t1

Sequence Viewer

Length: 1137 bp
ATGTTACAAATCCCAAAATTCTTGCAGTCCTCCACTCAATGCCTTCATCCTCCGACGCCGCAATCGCCACCACCCGTTATACAAGTCCCAGGCGTACCTACTTCATCTTTTCGTTCCATCAAACAATGCTGTAAGCTATCACGTAGAGAACTTGCAATTCGAAGCAACTCTCTGTTACTTCTCCTCCTGGGTTCGCAAAGCATCGAAGTTTTCCTACCGTCTGAAGCAGAAGCCGAGGAGGACGTGGTTGATGGCAGTATTGATGCACAAGAACAAACTTCAAACGTGGTTGATGGCAGTGGCATTGTTGAGAGGAGTAGCAATGCACAGGAAGACGGTTCAAACGTGGTTGATGGCAGTAGCAATGCACAGGAAGGAAGTACAAACGTGGTTGATAGCAGTAGCAATGCACAAGAACAAAGCTCAAACGCTACTCCTACTTGCGGTGATAAGACCCCAACAAAGCGTGCATTTCTTGATATCTCAATTGATGGAGAACCTATTGGCCGCATTGTCATCGGGCTACAAGAAGATGAAGCTCCTTTTGGAGCTGCTCGATTTCGAAACCTTGTCAGCGGAGCTGCTGGGGTGAGCTACAGAAGGAAAGAGTTTATCAAAATTACGCCCAGCTATGTGCAACATGGTGGAGTGAGGTCTTATGGTGTAGACGCTGAGCTCGCAAAGAGCACAGGAAGCAGTTTGGCTGTTGATAAGCTCATTGAAGAGCGGGAGAGTTTATATGAAAAGTGTCCAGGAATCAAGAACAAGGCTGGCACTGTGGGCATTATTGTGAGAGACCCTTCAAAACCACCCCCGAAAACCAAACTGGTTGCGCGGAAAGGGAAGCTGGAGTTTGATCAAGAGGAGGTTGGTACGGCCCCGAACGGAACTGAGTTTGTGATTTCTACCAAAGATTCACCGGAGCTCGATGCTTCGGCTTTGGTGGTTGGAAGAGTTTTGGAAGGTATGGAGGTTGTGGAGAGGCTTGGCCAGGTGAAGACCGTGCAAGAGAACACCAGTTCACCTTATTTTAGGGTGGCCAAGCTGATTGGAGATAAGAGAGCTGTTGTGGCAGAAAGAGGATTCAACCGCCCTTACGCCAAGGTAGTTGTCACAAACTGTGGCCTGATGCAGTAA

Protein Analysis

379

Amino Acids

40.5

Weight (kDa)

5.44

Isoelectric Point (pI)

48.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 159 - 339 1.7e-16 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016034)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74070 AT1G74070
fragaria_vesca FvH4_5g12840
malus_domestica MD14G1220500.v1.1
prunus_persica Prupe.5G215800_v2.0.a1 Prupe.5G215800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0184401
rosa_laevigata RLG00000004979
rosa_multiflora Rmu_sc0001557.1_g000019
rosa_roxburghii Rroxscaffold_3G00269660
rosa_samantha Rh7AG080300 Rh7BG066900 Rh7CG067200 Rh7DG066900
rosa_wichuraiana Rw7G005500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 727
AccI GTMKAC 1 cut(s) 666
AccII CGCG 1 cut(s) 835
AciI CCGC 7 cut(s) 59, 444, 508, 576, 727, 835, 1090
AcoI YGGCCR 3 cut(s) 505, 988, 1038
AcsI RAATTY 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 243
AcyI GRCGYC 1 cut(s) 56
AfaI GTAC 3 cut(s) 96, 382, 874
AfiI CCNNNNNNNGG 1 cut(s) 443
AgsI TTSAA 5 cut(s) 282, 342, 722, 804, 1087
AjiI CACGTC 1 cut(s) 244
AjnI CCWGG 4 cut(s) 88, 186, 751, 990
AjuI GAANNNNNNNTTGG 2 cut(s) 528, 560
Alw21I GWGCWC 3 cut(s) 678, 689, 927
Alw26I GTCTC 1 cut(s) 789
AoxI GGCC 5 cut(s) 505, 876, 988, 1038, 1123
ApeKI GCWGC 2 cut(s) 551, 581
ApoI RAATTY 1 cut(s) 17
AspLEI GCGC 1 cut(s) 835
AspS9I GGNCC 1 cut(s) 877
AsuHPI GGTGA 5 cut(s) 458, 601, 909, 1006, 1014
AsuII TTCGAA 2 cut(s) 160, 562
BalI TGGCCA 2 cut(s) 990, 1040
BanII GRGCYC 2 cut(s) 678, 927
BarI GAAGNNNNNNTAC 2 cut(s) 198, 230
BbsI GAAGAC 2 cut(s) 339, 1004
Bbv12I GWGCWC 3 cut(s) 678, 689, 927
BbvI GCAGC 2 cut(s) 538, 568
BccI CCATC 5 cut(s) 125, 245, 287, 347, 485
BceAI ACGGC 1 cut(s) 891
BcgI CGANNNNNNTGC 2 cut(s) 499, 533
BciT130I CCWGG 4 cut(s) 90, 188, 753, 992
BclI TGATCA 1 cut(s) 856
BcoDI GTCTC 1 cut(s) 789
BfmI CTRYAG 1 cut(s) 595
BisI GCNGC 4 cut(s) 59, 508, 552, 582
BlpI GCTNAGC 1 cut(s) 672
BlsI GCNGC 4 cut(s) 60, 509, 553, 583
Bme1390I CCNGG 4 cut(s) 90, 188, 753, 992
BmgBI CACGTC 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 877
BmiI GGNNCC 1 cut(s) 879
BmrFI CCNGG 4 cut(s) 90, 188, 753, 992
BmsI GCATC 4 cut(s) 210, 253, 919, 1119
BpiI GAAGAC 2 cut(s) 339, 1004
BpmI CTGGAG 1 cut(s) 869
Bpu1102I GCTNAGC 1 cut(s) 672
Bpu14I TTCGAA 2 cut(s) 160, 562
BsaAI YACGTR 1 cut(s) 143
BsaHI GRCGYC 1 cut(s) 56
BsaI GGTCTC 1 cut(s) 789
BsaJI CCNNGG 4 cut(s) 88, 187, 234, 1101
BsaWI WCCGGW 1 cut(s) 919
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bsc4I CCNNNNNNNGG 1 cut(s) 443
Bse1I ACTGG 2 cut(s) 831, 1017
Bse3DI GCAATG 3 cut(s) 328, 370, 412
BseBI CCWGG 4 cut(s) 90, 188, 753, 992
BseDI CCNNGG 4 cut(s) 88, 187, 234, 1101
BseGI GGATG 1 cut(s) 46
BseLI CCNNNNNNNGG 1 cut(s) 443
BseMI GCAATG 3 cut(s) 328, 370, 412
BseMII CTCAG 2 cut(s) 663, 882
BseNI ACTGG 2 cut(s) 831, 1017
BseRI GAGGAG 4 cut(s) 173, 251, 328, 878
BseXI GCAGC 2 cut(s) 538, 568
BseYI CCCAGC 2 cut(s) 584, 626
Bsh1236I CGCG 1 cut(s) 835
BshFI GGCC 5 cut(s) 507, 878, 990, 1040, 1125
BsiHKAI GWGCWC 3 cut(s) 678, 689, 927
BsiSI CCGG 1 cut(s) 920
BslFI GGGAC 1 cut(s) 71
BslI CCNNNNNNNGG 1 cut(s) 443
BsmAI GTCTC 1 cut(s) 789
BsmFI GGGAC 1 cut(s) 71
BsnI GGCC 5 cut(s) 507, 878, 990, 1040, 1125
Bso31I GGTCTC 1 cut(s) 789
Bsp119I TTCGAA 2 cut(s) 160, 562
Bsp1286I GDGCHC 3 cut(s) 678, 689, 927
Bsp143I GATC 1 cut(s) 856
Bsp1720I GCTNAGC 1 cut(s) 672
BspACI CCGC 7 cut(s) 59, 444, 508, 576, 727, 835, 1090
BspANI GGCC 5 cut(s) 507, 878, 990, 1040, 1125
BspCNI CTCAG 2 cut(s) 664, 883
BspFNI CGCG 1 cut(s) 835
BspLI GGNNCC 1 cut(s) 879
BspQI GCTCTTC 1 cut(s) 717
BspT104I TTCGAA 2 cut(s) 160, 562
BspTNI GGTCTC 1 cut(s) 789
BsrBI CCGCTC 1 cut(s) 727
BsrDI GCAATG 3 cut(s) 328, 370, 412
BsrI ACTGG 2 cut(s) 831, 1017
BssECI CCNNGG 4 cut(s) 88, 187, 234, 1101
BssMI GATC 1 cut(s) 856
BssNI GRCGYC 1 cut(s) 56
BssT1I CCWWGG 1 cut(s) 1101
Bst2UI CCWGG 4 cut(s) 90, 188, 753, 992
Bst4CI ACNGT 5 cut(s) 219, 338, 778, 1003, 1121
Bst6I CTCTTC 2 cut(s) 717, 946
BstACI GRCGYC 1 cut(s) 56
BstBAI YACGTR 1 cut(s) 143
BstBI TTCGAA 2 cut(s) 160, 562
BstC8I GCNNGC 3 cut(s) 468, 678, 772
BstDEI CTNAG 2 cut(s) 672, 891
BstF5I GGATG 1 cut(s) 46
BstFNI CGCG 1 cut(s) 835
BstHHI GCGC 1 cut(s) 835
BstKTI GATC 1 cut(s) 859
BstMAI GTCTC 1 cut(s) 789
BstMBI GATC 1 cut(s) 856
BstMWI GCNNNNNNNGC 5 cut(s) 64, 677, 693, 780, 1070
BstNI CCWGG 4 cut(s) 90, 188, 753, 992
BstSCI CCNGG 4 cut(s) 88, 186, 751, 990
BstSFI CTRYAG 1 cut(s) 595
BstUI CGCG 1 cut(s) 835
BstV1I GCAGC 2 cut(s) 538, 568
BstV2I GAAGAC 2 cut(s) 339, 1004
BsuRI GGCC 5 cut(s) 507, 878, 990, 1040, 1125
BtrI CACGTC 1 cut(s) 244
BtsCI GGATG 1 cut(s) 46
BtsI GCAGTG 1 cut(s) 304
BtsIMutI CAGTG 2 cut(s) 304, 774
Cac8I GCNNGC 3 cut(s) 468, 678, 772
CfoI GCGC 1 cut(s) 835
Cfr13I GGNCC 1 cut(s) 877
CseI GACGC 2 cut(s) 64, 677
Csp6I GTAC 3 cut(s) 95, 381, 873
CviAII CATG 1 cut(s) 641
CviQI GTAC 3 cut(s) 95, 381, 873
DdeI CTNAG 2 cut(s) 672, 891
DpnI GATC 1 cut(s) 858
DpnII GATC 1 cut(s) 856
EaeI YGGCCR 3 cut(s) 505, 988, 1038
Eam1104I CTCTTC 2 cut(s) 717, 946
EarI CTCTTC 2 cut(s) 717, 946
Ecl136II GAGCTC 2 cut(s) 676, 925
Eco130I CCWWGG 1 cut(s) 1101
Eco24I GRGCYC 2 cut(s) 678, 927
Eco31I GGTCTC 1 cut(s) 789
Eco32I GATATC 1 cut(s) 481
Eco53kI GAGCTC 2 cut(s) 676, 925
Eco57I CTGAAG 1 cut(s) 243
EcoICRI GAGCTC 2 cut(s) 676, 925
EcoRII CCWGG 4 cut(s) 88, 186, 751, 990
EcoRV GATATC 1 cut(s) 481
EcoT14I CCWWGG 1 cut(s) 1101
EcoT38I GRGCYC 2 cut(s) 678, 927
ErhI CCWWGG 1 cut(s) 1101
FaeI CATG 1 cut(s) 644
FaiI YATR 7 cut(s) 80, 633, 642, 660, 739, 741, 968
FaqI GGGAC 1 cut(s) 71
FatI CATG 1 cut(s) 640
FauI CCCGC 1 cut(s) 720
FbaI TGATCA 1 cut(s) 856
FblI GTMKAC 1 cut(s) 666
Fnu4HI GCNGC 4 cut(s) 59, 508, 552, 582
FokI GGATG 1 cut(s) 33
FriOI GRGCYC 2 cut(s) 678, 927
Fsp4HI GCNGC 4 cut(s) 59, 508, 552, 582
GlaI GCGC 1 cut(s) 834
GluI GCNGC 4 cut(s) 59, 508, 552, 582
GsaI CCCAGC 2 cut(s) 588, 630
GsuI CTGGAG 1 cut(s) 869
HaeIII GGCC 5 cut(s) 507, 878, 990, 1040, 1125
HapII CCGG 1 cut(s) 920
HgaI GACGC 2 cut(s) 64, 677
HhaI GCGC 1 cut(s) 835
Hin1I GRCGYC 1 cut(s) 56
Hin1II CATG 1 cut(s) 644
Hin6I GCGC 1 cut(s) 833
HinP1I GCGC 1 cut(s) 833
HinfI GANTC 3 cut(s) 756, 914, 1083
HpaII CCGG 1 cut(s) 920
HphI GGTGA 5 cut(s) 458, 601, 909, 1006, 1014
Hpy166II GTNNAC 2 cut(s) 667, 1022
Hpy188I TCNGA 2 cut(s) 54, 223
Hpy188III TCNNGA 3 cut(s) 476, 760, 860
Hpy8I GTNNAC 2 cut(s) 667, 1022
Hpy99I CGWCG 1 cut(s) 58
HpyAV CCTTC 5 cut(s) 53, 368, 594, 810, 956
HpyCH4III ACNGT 5 cut(s) 219, 338, 778, 1003, 1121
HpyCH4IV ACGT 5 cut(s) 142, 243, 285, 345, 387
HpyF10VI GCNNNNNNNGC 5 cut(s) 64, 677, 693, 780, 1070
HpyF3I CTNAG 2 cut(s) 672, 891
HpySE526I ACGT 5 cut(s) 142, 243, 285, 345, 387
Hsp92I GRCGYC 1 cut(s) 56
Hsp92II CATG 1 cut(s) 644
HspAI GCGC 1 cut(s) 833
Ksp22I TGATCA 1 cut(s) 856
Kzo9I GATC 1 cut(s) 856
LguI GCTCTTC 1 cut(s) 717
LmnI GCTCC 4 cut(s) 544, 548, 578, 922
Lsp1109I GCAGC 2 cut(s) 538, 568
LweI GCATC 4 cut(s) 210, 253, 919, 1119
MaeII ACGT 5 cut(s) 142, 243, 285, 345, 387
MaeIII GTNAC 3 cut(s) 3, 174, 1111
MalI GATC 1 cut(s) 858
MbiI CCGCTC 1 cut(s) 727
MboI GATC 1 cut(s) 856
MboII GAAGA 5 cut(s) 344, 542, 734, 963, 1009
MfeI CAATTG 1 cut(s) 486
MhlI GDGCHC 3 cut(s) 678, 689, 927
MlsI TGGCCA 2 cut(s) 990, 1040
MluCI AATT 4 cut(s) 17, 156, 486, 618
MluNI TGGCCA 2 cut(s) 990, 1040
MmeI TCCRAC 2 cut(s) 77, 928
Mox20I TGGCCA 2 cut(s) 990, 1040
MscI TGGCCA 2 cut(s) 990, 1040
MslI CAYNNNNRTG 1 cut(s) 788
Msp20I TGGCCA 2 cut(s) 990, 1040
MspA1I CMGCKG 1 cut(s) 576
MspI CCGG 1 cut(s) 920
MspR9I CCNGG 4 cut(s) 90, 188, 753, 992
MunI CAATTG 1 cut(s) 486
MvaI CCWGG 4 cut(s) 90, 188, 753, 992
MvnI CGCG 1 cut(s) 835
MwoI GCNNNNNNNGC 5 cut(s) 64, 677, 693, 780, 1070
NdeII GATC 1 cut(s) 856
NlaIII CATG 1 cut(s) 644
NlaIV GGNNCC 1 cut(s) 879
NmeAIII GCCGAG 1 cut(s) 259
NmuCI GTSAC 1 cut(s) 1111
NspV TTCGAA 2 cut(s) 160, 562
PciSI GCTCTTC 1 cut(s) 717
PcsI WCGNNNNNNNCGW 1 cut(s) 342
PfeI GAWTC 3 cut(s) 756, 914, 1083
PfoI TCCNGGA 1 cut(s) 751
PkrI GCNGC 4 cut(s) 60, 509, 553, 583
Ppu21I YACGTR 1 cut(s) 143
Psp124BI GAGCTC 2 cut(s) 678, 927
Psp6I CCWGG 4 cut(s) 88, 186, 751, 990
PspFI CCCAGC 2 cut(s) 584, 626
PspGI CCWGG 4 cut(s) 88, 186, 751, 990
PspN4I GGNNCC 1 cut(s) 879
PspPI GGNCC 1 cut(s) 877
RsaI GTAC 3 cut(s) 96, 382, 874
RsaNI GTAC 3 cut(s) 95, 381, 873
RseI CAYNNNNRTG 1 cut(s) 788
SacI GAGCTC 2 cut(s) 678, 927
SapI GCTCTTC 1 cut(s) 717
SatI GCNGC 4 cut(s) 59, 508, 552, 582
Sau3AI GATC 1 cut(s) 856
Sau96I GGNCC 1 cut(s) 877
ScrFI CCNGG 4 cut(s) 90, 188, 753, 992
SduI GDGCHC 3 cut(s) 678, 689, 927
SfaNI GCATC 4 cut(s) 210, 253, 919, 1119
SfcI CTRYAG 1 cut(s) 595
SfuI TTCGAA 2 cut(s) 160, 562
SmiMI CAYNNNNRTG 1 cut(s) 788
Sse9I AATT 4 cut(s) 17, 156, 486, 618
SsiI CCGC 7 cut(s) 59, 444, 508, 576, 727, 835, 1090
SstI GAGCTC 2 cut(s) 678, 927
StyD4I CCNGG 4 cut(s) 88, 186, 751, 990
StyI CCWWGG 1 cut(s) 1101
TaaI ACNGT 5 cut(s) 219, 338, 778, 1003, 1121
TaiI ACGT 5 cut(s) 145, 246, 288, 348, 390
TaqI TCGA 5 cut(s) 160, 204, 556, 562, 927
TasI AATT 4 cut(s) 17, 156, 486, 618
TatI WGTACW 1 cut(s) 380
TauI GCSGC 2 cut(s) 61, 510
TfiI GAWTC 3 cut(s) 756, 914, 1083
TscAI CASTG 2 cut(s) 304, 781
TseFI GTSAC 1 cut(s) 1111
TseI GCWGC 2 cut(s) 551, 581
Tsp45I GTSAC 1 cut(s) 1111
TspDTI ATGAA 4 cut(s) 35, 93, 549, 756
TspGWI ACGGA 1 cut(s) 900
TspRI CASTG 2 cut(s) 304, 781
XapI RAATTY 1 cut(s) 17
XmiI GTMKAC 1 cut(s) 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.