Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0016034

Physical Location & Seq

Genomic Coordinates Reverse (-)

30247354 .. 30248753

Gene Structure 1400 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1220500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGTTACCAAGCCCGAAATTCTTGCAAGCGTCCAGGACCTCCACTCAATGCCTTCATCTTCCAACGCCATCACCGCCGCCTCCGCCGCCCATTCCACAACTCCAAGGCGTATCCACTTCCTCATCTTTTCCTTCCATCAAACAATGCTGCAAATTATCGCGCAGAGAGCTCGCGATTCGAAGCAATTCTCTGTTACTTCTCCTCCTCGGCTCGCAGAGTGTAGAGGGTTTGTTGCCGTCTAAAGCACGAGCCGAGAACTTGGAAGACACCAATAACAACGAACAAGCAGCAGAAACTTCAAACCCTTCTGCGAGTGCCACTTGCATTGATAGAAGCCCGACAAAGCGTGCATTTCTCGATATATCCATCGACGGAGAGCCTGTTGGTCGGATTATAATTGGGCTACATGAAGACGATGCTCCGGTTGGCGCTGCTAGATTCGGTAGTCTTGTCAGTGGAGCTGCTGGCACTAGCTACCGGAGGAAAGAGTTCGTTAAGATTATGCCCAGCTATGTTCAGCACGGCGGAGTGAGATCTTTCGGTGTAGACGCTGAGCTCGCAAAGAAGACAGGAAGCAATTTGGAAGTTGATAGTCTCAATGAAGAGTGGGAGAGATTGAACGAAAAGTGTCCGGGCATCAAGAACAAGGCCGGAACTGTGAGCATTATCGTGAGAGATCCGTTGAAACCACCACCGAAGATAAAGCTAGTTGCGCGGAAAGGGAAGCTGGAGATTGATCAGGAGGAGGTTGGGACAGGCCCGAATGGAACGGAGTTCGTGATCACTACAAAGGATTCGCCTGAGCTCGATGCTTCAGCTTTGGTGGTCGGAACAGTCTTAGAAGGTAAGGAGGTCGTGGAGAGGCTGGGACAGGTAAAAACCGTGCAGGAGAACACTAGTTCACCGTATTTCAGGGTGGCCAAGCTGATCGGAGATAAGAGAGCTGTTGTGGCAGAAAGAGGATTCAACCGGCCTTACGCGAAGGTGATTGTCACAAACTGCGGCTTGATAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0055044 GO:0071704 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

339

Amino Acids

36.37

Weight (kDa)

8.81

Isoelectric Point (pI)

43.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	119 - 299	9.4e-15	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74070 AT1G74070
fragaria_vesca	FvH4_5g12840
malus_domestica	MD14G1220500.v1.1
prunus_persica	Prupe.5G215800_v2.0.a1 Prupe.5G215800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0184401
rosa_laevigata	RLG00000004979
rosa_multiflora	Rmu_sc0001557.1_g000019
rosa_roxburghii	Rroxscaffold_3G00269660
rosa_samantha	Rh7AG080300 Rh7BG066900 Rh7CG067200 Rh7DG066900
rosa_wichuraiana	Rw7G005500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	395
AccI	GTMKAC	1 cut(s)	546
AccII	CGCG	4 cut(s)	160, 173, 715, 980
AciI	CCGC	7 cut(s)	74, 77, 83, 86, 525, 715, 1002
AclWI	GGATC	1 cut(s)	671
AcoI	YGGCCR	1 cut(s)	918
AcsI	RAATTY	1 cut(s)	17
AcuI	CTGAAG	1 cut(s)	798
AgsI	TTSAA	4 cut(s)	300, 619, 685, 967
AhlI	ACTAGT	1 cut(s)	896
AjnI	CCWGG	1 cut(s)	32
Alw21I	GWGCWC	3 cut(s)	171, 558, 807
Alw26I	GTCTC	1 cut(s)	599
AlwI	GGATC	1 cut(s)	671
AoxI	GGCC	4 cut(s)	648, 757, 918, 971
ApeKI	GCWGC	4 cut(s)	147, 287, 431, 461
ApoI	RAATTY	1 cut(s)	17
Asp700I	GAANNNNTTC	2 cut(s)	184, 488
AspLEI	GCGC	3 cut(s)	162, 431, 715
AspS9I	GGNCC	2 cut(s)	36, 758
AsuC2I	CCSGG	1 cut(s)	633
AsuHPI	GGTGA	3 cut(s)	63, 894, 997
AsuII	TTCGAA	1 cut(s)	178
AvaII	GGWCC	1 cut(s)	36
BalI	TGGCCA	1 cut(s)	920
BanII	GRGCYC	3 cut(s)	171, 558, 807
BauI	CACGAG	1 cut(s)	246
BbsI	GAAGAC	3 cut(s)	270, 417, 572
Bbv12I	GWGCWC	3 cut(s)	171, 558, 807
BbvI	GCAGC	4 cut(s)	134, 299, 418, 448
BccI	CCATC	3 cut(s)	76, 143, 374
BceAI	ACGGC	2 cut(s)	220, 538
BcgI	CGANNNNNNTGC	4 cut(s)	4, 38, 151, 185
BciT130I	CCWGG	1 cut(s)	34
BciVI	GTATCC	1 cut(s)	121
BclI	TGATCA	2 cut(s)	736, 780
BcnI	CCSGG	1 cut(s)	633
BcoDI	GTCTC	1 cut(s)	599
BcuI	ACTAGT	1 cut(s)	896
BfaI	CTAG	4 cut(s)	435, 471, 707, 897
BfoI	RGCGCY	1 cut(s)	432
BfuI	GTATCC	1 cut(s)	121
BglII	AGATCT	1 cut(s)	533
BisI	GCNGC	7 cut(s)	77, 86, 148, 288, 432, 462, 1003
BlpI	GCTNAGC	1 cut(s)	552
BlsI	GCNGC	7 cut(s)	78, 87, 149, 289, 433, 463, 1004
Bme1390I	CCNGG	2 cut(s)	34, 633
Bme18I	GGWCC	1 cut(s)	36
BmgT120I	GGNCC	2 cut(s)	36, 758
BmrFI	CCNGG	2 cut(s)	34, 633
BmsI	GCATC	3 cut(s)	406, 645, 799
BpiI	GAAGAC	3 cut(s)	270, 417, 572
BpmI	CTGGAG	1 cut(s)	749
Bpu10I	CCTNAGC	1 cut(s)	801
Bpu1102I	GCTNAGC	1 cut(s)	552
Bpu14I	TTCGAA	1 cut(s)	178
BpuMI	CCSGG	1 cut(s)	633
BsaJI	CCNNGG	2 cut(s)	103, 205
BsaWI	WCCGGW	2 cut(s)	421, 477
BsaXI	ACNNNNNCTCC	4 cut(s)	186, 216, 366, 396
Bse118I	RCCGGY	1 cut(s)	969
BseBI	CCWGG	1 cut(s)	34
BseDI	CCNNGG	2 cut(s)	103, 205
BseMII	CTCAG	2 cut(s)	543, 792
BseRI	GAGGAG	3 cut(s)	191, 194, 758
BseXI	GCAGC	4 cut(s)	134, 299, 418, 448
BseYI	CCCAGC	2 cut(s)	506, 865
BsgI	GTGCAG	1 cut(s)	905
Bsh1236I	CGCG	4 cut(s)	160, 173, 715, 980
BshFI	GGCC	4 cut(s)	650, 759, 920, 973
BsiHKAI	GWGCWC	3 cut(s)	171, 558, 807
BsiSI	CCGG	5 cut(s)	422, 478, 632, 651, 970
BslFI	GGGAC	2 cut(s)	766, 882
BsmAI	GTCTC	1 cut(s)	599
BsmFI	GGGAC	2 cut(s)	766, 882
BsnI	GGCC	4 cut(s)	650, 759, 920, 973
Bsp119I	TTCGAA	1 cut(s)	178
Bsp1286I	GDGCHC	3 cut(s)	171, 558, 807
Bsp143I	GATC	5 cut(s)	533, 676, 736, 780, 927
Bsp1720I	GCTNAGC	1 cut(s)	552
Bsp68I	TCGCGA	1 cut(s)	173
BspACI	CCGC	7 cut(s)	74, 77, 83, 86, 525, 715, 1002
BspANI	GGCC	4 cut(s)	650, 759, 920, 973
BspCNI	CTCAG	2 cut(s)	544, 793
BspFNI	CGCG	4 cut(s)	160, 173, 715, 980
BspPI	GGATC	1 cut(s)	671
BspT104I	TTCGAA	1 cut(s)	178
BsrFI	RCCGGY	1 cut(s)	969
BssAI	RCCGGY	1 cut(s)	969
BssECI	CCNNGG	2 cut(s)	103, 205
BssMI	GATC	5 cut(s)	533, 676, 736, 780, 927
BssSI	CACGAG	1 cut(s)	246
BssT1I	CCWWGG	1 cut(s)	103
Bst2BI	CACGAG	1 cut(s)	246
Bst2UI	CCWGG	1 cut(s)	34
Bst4CI	ACNGT	4 cut(s)	658, 835, 883, 906
Bst6I	CTCTTC	1 cut(s)	597
BstBI	TTCGAA	1 cut(s)	178
BstC8I	GCNNGC	6 cut(s)	27, 171, 212, 348, 466, 558
BstDEI	CTNAG	3 cut(s)	552, 801, 838
BstFNI	CGCG	4 cut(s)	160, 173, 715, 980
BstH2I	RGCGCY	1 cut(s)	432
BstHHI	GCGC	3 cut(s)	162, 431, 715
BstKTI	GATC	5 cut(s)	536, 679, 739, 783, 930
BstMAI	GTCTC	1 cut(s)	599
BstMBI	GATC	5 cut(s)	533, 676, 736, 780, 927
BstMWI	GCNNNNNNNGC	7 cut(s)	73, 82, 85, 166, 557, 712, 950
BstNI	CCWGG	1 cut(s)	34
BstSCI	CCNGG	2 cut(s)	32, 631
BstUI	CGCG	4 cut(s)	160, 173, 715, 980
BstV1I	GCAGC	4 cut(s)	134, 299, 418, 448
BstV2I	GAAGAC	3 cut(s)	270, 417, 572
BstX2I	RGATCY	2 cut(s)	533, 676
BstYI	RGATCY	2 cut(s)	533, 676
BsuI	GTATCC	1 cut(s)	121
BsuRI	GGCC	4 cut(s)	650, 759, 920, 973
BtsIMutI	CAGTG	1 cut(s)	460
BtuMI	TCGCGA	1 cut(s)	173
Cac8I	GCNNGC	6 cut(s)	27, 171, 212, 348, 466, 558
CfoI	GCGC	3 cut(s)	162, 431, 715
Cfr10I	RCCGGY	1 cut(s)	969
Cfr13I	GGNCC	2 cut(s)	36, 758
CseI	GACGC	2 cut(s)	18, 557
CspCI	CAANNNNNGTGG	2 cut(s)	307, 342
CviAII	CATG	1 cut(s)	407
DdeI	CTNAG	3 cut(s)	552, 801, 838
DpnI	GATC	5 cut(s)	535, 678, 738, 782, 929
DpnII	GATC	5 cut(s)	533, 676, 736, 780, 927
EaeI	YGGCCR	1 cut(s)	918
Eam1104I	CTCTTC	1 cut(s)	597
EarI	CTCTTC	1 cut(s)	597
EciI	GGCGGA	2 cut(s)	72, 540
Ecl136II	GAGCTC	3 cut(s)	169, 556, 805
Eco130I	CCWWGG	1 cut(s)	103
Eco24I	GRGCYC	3 cut(s)	171, 558, 807
Eco47I	GGWCC	1 cut(s)	36
Eco53kI	GAGCTC	3 cut(s)	169, 556, 805
Eco57I	CTGAAG	1 cut(s)	798
EcoICRI	GAGCTC	3 cut(s)	169, 556, 805
EcoO109I	RGGNCCY	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	32
EcoT14I	CCWWGG	1 cut(s)	103
EcoT38I	GRGCYC	3 cut(s)	171, 558, 807
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	1 cut(s)	410
FaiI	YATR	5 cut(s)	362, 395, 408, 503, 513
FaqI	GGGAC	2 cut(s)	766, 882
FatI	CATG	1 cut(s)	406
FbaI	TGATCA	2 cut(s)	736, 780
FblI	GTMKAC	1 cut(s)	546
Fnu4HI	GCNGC	7 cut(s)	77, 86, 148, 288, 432, 462, 1003
FriOI	GRGCYC	3 cut(s)	171, 558, 807
Fsp4HI	GCNGC	7 cut(s)	77, 86, 148, 288, 432, 462, 1003
FspBI	CTAG	4 cut(s)	435, 471, 707, 897
GlaI	GCGC	3 cut(s)	161, 430, 714
GluI	GCNGC	7 cut(s)	77, 86, 148, 288, 432, 462, 1003
GsaI	CCCAGC	2 cut(s)	510, 869
GsuI	CTGGAG	1 cut(s)	749
HaeII	RGCGCY	1 cut(s)	432
HaeIII	GGCC	4 cut(s)	650, 759, 920, 973
HapII	CCGG	5 cut(s)	422, 478, 632, 651, 970
HgaI	GACGC	2 cut(s)	18, 557
HhaI	GCGC	3 cut(s)	162, 431, 715
Hin1II	CATG	1 cut(s)	410
Hin6I	GCGC	3 cut(s)	160, 429, 713
HinP1I	GCGC	3 cut(s)	160, 429, 713
HinfI	GANTC	4 cut(s)	175, 438, 794, 963
HpaII	CCGG	5 cut(s)	422, 478, 632, 651, 970
HphI	GGTGA	3 cut(s)	63, 894, 997
Hpy166II	GTNNAC	2 cut(s)	547, 902
Hpy188I	TCNGA	3 cut(s)	390, 830, 932
Hpy188III	TCNNGA	6 cut(s)	172, 356, 640, 670, 740, 778
Hpy8I	GTNNAC	2 cut(s)	547, 902
Hpy99I	CGWCG	1 cut(s)	374
HpyAV	CCTTC	5 cut(s)	62, 141, 315, 836, 976
HpyCH4III	ACNGT	4 cut(s)	658, 835, 883, 906
HpyCH4V	TGCA	5 cut(s)	25, 150, 324, 350, 886
HpyF10VI	GCNNNNNNNGC	7 cut(s)	73, 82, 85, 166, 557, 712, 950
HpyF3I	CTNAG	3 cut(s)	552, 801, 838
Hsp92II	CATG	1 cut(s)	410
HspAI	GCGC	3 cut(s)	160, 429, 713
Ksp22I	TGATCA	2 cut(s)	736, 780
Kzo9I	GATC	5 cut(s)	533, 676, 736, 780, 927
LmnI	GCTCC	2 cut(s)	424, 458
Lsp1109I	GCAGC	4 cut(s)	134, 299, 418, 448
LweI	GCATC	3 cut(s)	406, 645, 799
MaeI	CTAG	4 cut(s)	435, 471, 707, 897
MaeIII	GTNAC	3 cut(s)	3, 192, 991
MalI	GATC	5 cut(s)	535, 678, 738, 782, 929
MboI	GATC	5 cut(s)	533, 676, 736, 780, 927
MboII	GAAGA	6 cut(s)	50, 275, 422, 577, 614, 709
MflI	RGATCY	2 cut(s)	533, 676
MhlI	GDGCHC	3 cut(s)	171, 558, 807
MlsI	TGGCCA	1 cut(s)	920
MluCI	AATT	5 cut(s)	17, 152, 184, 396, 577
MluNI	TGGCCA	1 cut(s)	920
MmeI	TCCRAC	3 cut(s)	86, 368, 808
Mox20I	TGGCCA	1 cut(s)	920
MroXI	GAANNNNTTC	2 cut(s)	184, 488
MscI	TGGCCA	1 cut(s)	920
MseI	TTAA	1 cut(s)	495
MslI	CAYNNNNRTG	1 cut(s)	668
Msp20I	TGGCCA	1 cut(s)	920
MspI	CCGG	5 cut(s)	422, 478, 632, 651, 970
MspR9I	CCNGG	2 cut(s)	34, 633
MvaI	CCWGG	1 cut(s)	34
MvnI	CGCG	4 cut(s)	160, 173, 715, 980
MwoI	GCNNNNNNNGC	7 cut(s)	73, 82, 85, 166, 557, 712, 950
NciI	CCSGG	1 cut(s)	633
NdeII	GATC	5 cut(s)	533, 676, 736, 780, 927
NlaIII	CATG	1 cut(s)	410
NmeAIII	GCCGAG	2 cut(s)	186, 277
NmuCI	GTSAC	1 cut(s)	991
NruI	TCGCGA	1 cut(s)	173
NspV	TTCGAA	1 cut(s)	178
PdmI	GAANNNNTTC	2 cut(s)	184, 488
PfeI	GAWTC	4 cut(s)	175, 438, 794, 963
PfoI	TCCNGGA	1 cut(s)	32
PkrI	GCNGC	7 cut(s)	78, 87, 149, 289, 433, 463, 1004
PpuMI	RGGWCCY	1 cut(s)	36
PsiI	TTATAA	1 cut(s)	395
Psp124BI	GAGCTC	3 cut(s)	171, 558, 807
Psp5II	RGGWCCY	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	32
PspFI	CCCAGC	2 cut(s)	506, 865
PspGI	CCWGG	1 cut(s)	32
PspPI	GGNCC	2 cut(s)	36, 758
PspPPI	RGGWCCY	1 cut(s)	36
PsuI	RGATCY	2 cut(s)	533, 676
RruI	TCGCGA	1 cut(s)	173
RseI	CAYNNNNRTG	1 cut(s)	668
SacI	GAGCTC	3 cut(s)	171, 558, 807
SaqAI	TTAA	1 cut(s)	495
SatI	GCNGC	7 cut(s)	77, 86, 148, 288, 432, 462, 1003
Sau3AI	GATC	5 cut(s)	533, 676, 736, 780, 927
Sau96I	GGNCC	2 cut(s)	36, 758
ScrFI	CCNGG	2 cut(s)	34, 633
SduI	GDGCHC	3 cut(s)	171, 558, 807
SfaNI	GCATC	3 cut(s)	406, 645, 799
SfuI	TTCGAA	1 cut(s)	178
SinI	GGWCC	1 cut(s)	36
SmiMI	CAYNNNNRTG	1 cut(s)	668
SpeI	ACTAGT	1 cut(s)	896
Sse9I	AATT	5 cut(s)	17, 152, 184, 396, 577
SsiI	CCGC	7 cut(s)	74, 77, 83, 86, 525, 715, 1002
SspMI	CTAG	4 cut(s)	435, 471, 707, 897
SstI	GAGCTC	3 cut(s)	171, 558, 807
StyD4I	CCNGG	2 cut(s)	32, 631
StyI	CCWWGG	1 cut(s)	103
TaaI	ACNGT	4 cut(s)	658, 835, 883, 906
TaqI	TCGA	4 cut(s)	178, 357, 369, 807
TasI	AATT	5 cut(s)	17, 152, 184, 396, 577
TauI	GCSGC	3 cut(s)	79, 88, 1005
TfiI	GAWTC	4 cut(s)	175, 438, 794, 963
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TscAI	CASTG	1 cut(s)	460
TseFI	GTSAC	1 cut(s)	991
TseI	GCWGC	4 cut(s)	147, 287, 431, 461
Tsp45I	GTSAC	1 cut(s)	991
TspDTI	ATGAA	3 cut(s)	44, 423, 615
TspGWI	ACGGA	3 cut(s)	387, 669, 785
TspRI	CASTG	1 cut(s)	460
VpaK11BI	GGWCC	1 cut(s)	36
XapI	RAATTY	1 cut(s)	17
XmiI	GTMKAC	1 cut(s)	546
XmnI	GAANNNNTTC	2 cut(s)	184, 488
XspI	CTAG	4 cut(s)	435, 471, 707, 897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.