Rroxscaffold_3G00269660

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0016034
Physical Location & Seq
Forward (+)
62468229 .. 62469766
1538 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00269660.1

Sequence Viewer

Length: 993 bp
ATGTTACAAATCCCAAAATTCTTGCAGTCCTCCACTCAATGCCTTCATCCTCCGACGCCGCAACCGCCGGTACCCATTCTACGAGTCCCAGGTGTACCTACTTCTTCATCTTTTCCTTCCATCAAACAATGCTGTAAGCTATCACGTAGAGAACTTGCAATTCGAAGCAATTCTCTGTTACTTCTCCTGGGCTCGCAGAGCATTGAGGCTTTTCTACCGTCTAAAGCAGAGGCCGAGGAGGACGTGGTTGATGCCGGTAGCAATGCACAAGAACAAAGTTCAAACGCTACTCCTACTTGCGGTGATAAGAGCCCAACAAAGCGTGCATTTCTTGATATATCAATTGACGGAGAGCCTGTTGGCCGCATTGTCATCGGGATACAGGAAGATGATGCTCCTGTTGGGGCTGCTCGATTTCGTAATCTTGTCAGTGGAGCTGCTGGGGTGAGCTACAGAAGGAAAGAGTTTGTTAAAATTACGCCAAATTATGTGCAACATGGTGGTGTGAGATCTTATGGTGTAGATGCTGAGCTCGCAAAGAGCACAGGAAGCAGTTTGGAAGTTGATAAGCTCACTGAAGAGTGGGAGAGTTTGTATGAAAAGTGTCCAGGCATCAAGAACAAGGCTGGCACTGTGGGGATTATTGTGAGAGACCCTTCAAAACCACCGCCGAAAATCAAGCTGGTTGCGCGGAAAGGGAAGCTGGAGATTGATCAAGAGGAGGTGGGTACGGCCCCTAACGGAACAGAGTTTGTGATTTCTACCAAAGATTCACCTGAGCTCGATGCTTCGACTTTGGTGGTTGGAAGAGTTTTGGAAGGTATGGAGGTCGTGGAGAGGCTTGGCCAGGTGAAAACCGTGCAAGAGAACACTAGTTCGCCTTATTTTAGGGTGGCCAAGCTGATAGGAGATAAGAGAGCTGTCGTCGCAGAAAGAGGATTCAACCGCCCTTACGCCAAGGTAGTTGTCACAAACTGTGGCCTGATACAGTAA

Protein Analysis

330

Amino Acids

35.59

Weight (kDa)

8.43

Isoelectric Point (pI)

47.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 111 - 291 8.2e-17 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016034)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74070 AT1G74070
fragaria_vesca FvH4_5g12840
malus_domestica MD14G1220500.v1.1
prunus_persica Prupe.5G215800_v2.0.a1 Prupe.5G215800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0184401
rosa_laevigata RLG00000004979
rosa_multiflora Rmu_sc0001557.1_g000019
rosa_roxburghii Rroxscaffold_3G00269660
rosa_samantha Rh7AG080300 Rh7BG066900 Rh7CG067200 Rh7DG066900
rosa_wichuraiana Rw7G005500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 70
AccB1I GGYRCC 1 cut(s) 70
AccII CGCG 1 cut(s) 691
AciI CCGC 7 cut(s) 59, 65, 300, 364, 668, 691, 946
AcoI YGGCCR 3 cut(s) 361, 844, 894
AcsI RAATTY 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 597
AcyI GRCGYC 1 cut(s) 56
AfaI GTAC 3 cut(s) 72, 96, 730
AfiI CCNNNNNNNGG 1 cut(s) 299
AgsI TTSAA 3 cut(s) 282, 660, 943
AhlI ACTAGT 1 cut(s) 872
AjiI CACGTC 1 cut(s) 244
AjnI CCWGG 4 cut(s) 88, 186, 607, 846
Alw21I GWGCWC 3 cut(s) 534, 545, 783
Alw26I GTCTC 1 cut(s) 645
AoxI GGCC 6 cut(s) 231, 361, 732, 844, 894, 979
ApeKI GCWGC 2 cut(s) 407, 437
ApoI RAATTY 1 cut(s) 17
Asp700I GAANNNNTTC 1 cut(s) 169
Asp718I GGTACC 1 cut(s) 70
AspLEI GCGC 1 cut(s) 691
AspS9I GGNCC 1 cut(s) 733
AsuHPI GGTGA 4 cut(s) 314, 457, 765, 862
AsuII TTCGAA 1 cut(s) 163
BalI TGGCCA 2 cut(s) 846, 896
BanI GGYRCC 1 cut(s) 70
BanII GRGCYC 4 cut(s) 194, 314, 534, 783
Bbv12I GWGCWC 3 cut(s) 534, 545, 783
BbvI GCAGC 2 cut(s) 394, 424
BccI CCATC 1 cut(s) 128
BceAI ACGGC 1 cut(s) 747
BcgI CGANNNNNNTGC 2 cut(s) 355, 389
BciT130I CCWGG 4 cut(s) 90, 188, 609, 848
BciVI GTATCC 1 cut(s) 372
BclI TGATCA 1 cut(s) 712
BcoDI GTCTC 1 cut(s) 645
BcuI ACTAGT 1 cut(s) 872
BfaI CTAG 1 cut(s) 873
BfmI CTRYAG 1 cut(s) 451
BfuI GTATCC 1 cut(s) 372
BglII AGATCT 1 cut(s) 509
BisI GCNGC 4 cut(s) 59, 364, 408, 438
BlpI GCTNAGC 1 cut(s) 528
BlsI GCNGC 4 cut(s) 60, 365, 409, 439
Bme1390I CCNGG 4 cut(s) 90, 188, 609, 848
BmgBI CACGTC 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 733
BmiI GGNNCC 2 cut(s) 72, 735
BmrFI CCNGG 4 cut(s) 90, 188, 609, 848
BmsI GCATC 5 cut(s) 241, 382, 514, 621, 775
BpmI CTGGAG 1 cut(s) 725
Bpu10I CCTNAGC 1 cut(s) 777
Bpu1102I GCTNAGC 1 cut(s) 528
Bpu14I TTCGAA 1 cut(s) 163
BsaAI YACGTR 1 cut(s) 146
BsaHI GRCGYC 1 cut(s) 56
BsaI GGTCTC 1 cut(s) 645
BsaJI CCNNGG 4 cut(s) 88, 187, 234, 957
BsaXI ACNNNNNCTCC 4 cut(s) 342, 372, 578, 608
Bsc4I CCNNNNNNNGG 1 cut(s) 299
Bse118I RCCGGY 2 cut(s) 67, 254
Bse3DI GCAATG 1 cut(s) 268
BseBI CCWGG 4 cut(s) 90, 188, 609, 848
BseDI CCNNGG 4 cut(s) 88, 187, 234, 957
BseGI GGATG 1 cut(s) 46
BseLI CCNNNNNNNGG 1 cut(s) 299
BseMI GCAATG 1 cut(s) 268
BseMII CTCAG 2 cut(s) 519, 768
BseRI GAGGAG 2 cut(s) 251, 734
BseXI GCAGC 2 cut(s) 394, 424
BseYI CCCAGC 1 cut(s) 440
Bsh1236I CGCG 1 cut(s) 691
BshFI GGCC 6 cut(s) 233, 363, 734, 846, 896, 981
BshNI GGYRCC 1 cut(s) 70
BsiHKAI GWGCWC 3 cut(s) 534, 545, 783
BsiSI CCGG 2 cut(s) 68, 255
BslFI GGGAC 1 cut(s) 71
BslI CCNNNNNNNGG 1 cut(s) 299
BsmAI GTCTC 1 cut(s) 645
BsmFI GGGAC 1 cut(s) 71
BsnI GGCC 6 cut(s) 233, 363, 734, 846, 896, 981
Bso31I GGTCTC 1 cut(s) 645
Bsp119I TTCGAA 1 cut(s) 163
Bsp1286I GDGCHC 5 cut(s) 194, 314, 534, 545, 783
Bsp143I GATC 2 cut(s) 509, 712
Bsp1720I GCTNAGC 1 cut(s) 528
BspACI CCGC 7 cut(s) 59, 65, 300, 364, 668, 691, 946
BspANI GGCC 6 cut(s) 233, 363, 734, 846, 896, 981
BspCNI CTCAG 2 cut(s) 520, 769
BspFNI CGCG 1 cut(s) 691
BspLI GGNNCC 2 cut(s) 72, 735
BspT104I TTCGAA 1 cut(s) 163
BspT107I GGYRCC 1 cut(s) 70
BspTNI GGTCTC 1 cut(s) 645
BsrDI GCAATG 1 cut(s) 268
BsrFI RCCGGY 2 cut(s) 67, 254
BssAI RCCGGY 2 cut(s) 67, 254
BssECI CCNNGG 4 cut(s) 88, 187, 234, 957
BssMI GATC 2 cut(s) 509, 712
BssNI GRCGYC 1 cut(s) 56
BssT1I CCWWGG 1 cut(s) 957
Bst2UI CCWGG 4 cut(s) 90, 188, 609, 848
Bst4CI ACNGT 5 cut(s) 219, 634, 859, 977, 990
Bst6I CTCTTC 2 cut(s) 573, 802
BstACI GRCGYC 1 cut(s) 56
BstBAI YACGTR 1 cut(s) 146
BstBI TTCGAA 1 cut(s) 163
BstC8I GCNNGC 4 cut(s) 194, 324, 534, 628
BstDEI CTNAG 2 cut(s) 528, 777
BstF5I GGATG 1 cut(s) 46
BstFNI CGCG 1 cut(s) 691
BstHHI GCGC 1 cut(s) 691
BstKTI GATC 2 cut(s) 512, 715
BstMAI GTCTC 1 cut(s) 645
BstMBI GATC 2 cut(s) 509, 712
BstMWI GCNNNNNNNGC 6 cut(s) 64, 198, 533, 549, 688, 926
BstNI CCWGG 4 cut(s) 90, 188, 609, 848
BstSCI CCNGG 4 cut(s) 88, 186, 607, 846
BstSFI CTRYAG 1 cut(s) 451
BstUI CGCG 1 cut(s) 691
BstV1I GCAGC 2 cut(s) 394, 424
BstX2I RGATCY 1 cut(s) 509
BstYI RGATCY 1 cut(s) 509
BsuI GTATCC 1 cut(s) 372
BsuRI GGCC 6 cut(s) 233, 363, 734, 846, 896, 981
BtrI CACGTC 1 cut(s) 244
BtsCI GGATG 1 cut(s) 46
BtsIMutI CAGTG 3 cut(s) 436, 573, 630
Cac8I GCNNGC 4 cut(s) 194, 324, 534, 628
CfoI GCGC 1 cut(s) 691
Cfr10I RCCGGY 2 cut(s) 67, 254
Cfr13I GGNCC 1 cut(s) 733
CseI GACGC 1 cut(s) 64
Csp6I GTAC 3 cut(s) 71, 95, 729
CviAII CATG 1 cut(s) 497
CviQI GTAC 3 cut(s) 71, 95, 729
DdeI CTNAG 2 cut(s) 528, 777
DpnI GATC 2 cut(s) 511, 714
DpnII GATC 2 cut(s) 509, 712
EaeI YGGCCR 3 cut(s) 361, 844, 894
Eam1104I CTCTTC 2 cut(s) 573, 802
EarI CTCTTC 2 cut(s) 573, 802
Ecl136II GAGCTC 2 cut(s) 532, 781
Eco130I CCWWGG 1 cut(s) 957
Eco24I GRGCYC 4 cut(s) 194, 314, 534, 783
Eco31I GGTCTC 1 cut(s) 645
Eco53kI GAGCTC 2 cut(s) 532, 781
Eco57I CTGAAG 1 cut(s) 597
EcoICRI GAGCTC 2 cut(s) 532, 781
EcoRII CCWGG 4 cut(s) 88, 186, 607, 846
EcoT14I CCWWGG 1 cut(s) 957
EcoT38I GRGCYC 4 cut(s) 194, 314, 534, 783
ErhI CCWWGG 1 cut(s) 957
FaeI CATG 1 cut(s) 500
FaiI YATR 6 cut(s) 338, 489, 498, 516, 597, 824
FaqI GGGAC 1 cut(s) 71
FatI CATG 1 cut(s) 496
FbaI TGATCA 1 cut(s) 712
Fnu4HI GCNGC 4 cut(s) 59, 364, 408, 438
FokI GGATG 1 cut(s) 33
FriOI GRGCYC 4 cut(s) 194, 314, 534, 783
Fsp4HI GCNGC 4 cut(s) 59, 364, 408, 438
FspBI CTAG 1 cut(s) 873
GlaI GCGC 1 cut(s) 690
GluI GCNGC 4 cut(s) 59, 364, 408, 438
GsaI CCCAGC 1 cut(s) 444
GsuI CTGGAG 1 cut(s) 725
HaeIII GGCC 6 cut(s) 233, 363, 734, 846, 896, 981
HapII CCGG 2 cut(s) 68, 255
HgaI GACGC 1 cut(s) 64
HhaI GCGC 1 cut(s) 691
Hin1I GRCGYC 1 cut(s) 56
Hin1II CATG 1 cut(s) 500
Hin6I GCGC 1 cut(s) 689
HinP1I GCGC 1 cut(s) 689
HinfI GANTC 3 cut(s) 84, 770, 939
HpaII CCGG 2 cut(s) 68, 255
HphI GGTGA 4 cut(s) 314, 457, 765, 862
Hpy166II GTNNAC 1 cut(s) 95
Hpy188I TCNGA 1 cut(s) 54
Hpy188III TCNNGA 4 cut(s) 332, 376, 616, 716
Hpy8I GTNNAC 1 cut(s) 95
Hpy99I CGWCG 2 cut(s) 58, 929
HpyAV CCTTC 5 cut(s) 53, 126, 450, 666, 812
HpyCH4III ACNGT 5 cut(s) 219, 634, 859, 977, 990
HpyCH4IV ACGT 2 cut(s) 145, 243
HpyCH4V TGCA 6 cut(s) 25, 158, 266, 326, 493, 862
HpyF10VI GCNNNNNNNGC 6 cut(s) 64, 198, 533, 549, 688, 926
HpyF3I CTNAG 2 cut(s) 528, 777
HpySE526I ACGT 2 cut(s) 145, 243
Hsp92I GRCGYC 1 cut(s) 56
Hsp92II CATG 1 cut(s) 500
HspAI GCGC 1 cut(s) 689
KpnI GGTACC 1 cut(s) 74
Ksp22I TGATCA 1 cut(s) 712
Kzo9I GATC 2 cut(s) 509, 712
LmnI GCTCC 2 cut(s) 400, 434
Lsp1109I GCAGC 2 cut(s) 394, 424
LweI GCATC 5 cut(s) 241, 382, 514, 621, 775
MaeI CTAG 1 cut(s) 873
MaeII ACGT 2 cut(s) 145, 243
MaeIII GTNAC 3 cut(s) 3, 177, 967
MalI GATC 2 cut(s) 511, 714
MboI GATC 2 cut(s) 509, 712
MboII GAAGA 4 cut(s) 96, 398, 590, 819
MfeI CAATTG 1 cut(s) 342
MflI RGATCY 1 cut(s) 509
MhlI GDGCHC 5 cut(s) 194, 314, 534, 545, 783
MlsI TGGCCA 2 cut(s) 846, 896
MluCI AATT 6 cut(s) 17, 159, 169, 342, 474, 484
MluNI TGGCCA 2 cut(s) 846, 896
MlyI GAGTC 1 cut(s) 93
MmeI TCCRAC 2 cut(s) 77, 784
Mox20I TGGCCA 2 cut(s) 846, 896
MroXI GAANNNNTTC 1 cut(s) 169
MscI TGGCCA 2 cut(s) 846, 896
MseI TTAA 1 cut(s) 471
MslI CAYNNNNRTG 1 cut(s) 501
Msp20I TGGCCA 2 cut(s) 846, 896
MspI CCGG 2 cut(s) 68, 255
MspR9I CCNGG 4 cut(s) 90, 188, 609, 848
MunI CAATTG 1 cut(s) 342
MvaI CCWGG 4 cut(s) 90, 188, 609, 848
MvnI CGCG 1 cut(s) 691
MwoI GCNNNNNNNGC 6 cut(s) 64, 198, 533, 549, 688, 926
NdeII GATC 2 cut(s) 509, 712
NlaIII CATG 1 cut(s) 500
NlaIV GGNNCC 2 cut(s) 72, 735
NmeAIII GCCGAG 1 cut(s) 259
NmuCI GTSAC 1 cut(s) 967
NspV TTCGAA 1 cut(s) 163
PdmI GAANNNNTTC 1 cut(s) 169
PfeI GAWTC 2 cut(s) 770, 939
PkrI GCNGC 4 cut(s) 60, 365, 409, 439
PleI GAGTC 1 cut(s) 92
PpsI GAGTC 1 cut(s) 92
Ppu21I YACGTR 1 cut(s) 146
Psp124BI GAGCTC 2 cut(s) 534, 783
Psp6I CCWGG 4 cut(s) 88, 186, 607, 846
PspFI CCCAGC 1 cut(s) 440
PspGI CCWGG 4 cut(s) 88, 186, 607, 846
PspN4I GGNNCC 2 cut(s) 72, 735
PspPI GGNCC 1 cut(s) 733
PsuI RGATCY 1 cut(s) 509
RsaI GTAC 3 cut(s) 72, 96, 730
RsaNI GTAC 3 cut(s) 71, 95, 729
RseI CAYNNNNRTG 1 cut(s) 501
SacI GAGCTC 2 cut(s) 534, 783
SaqAI TTAA 1 cut(s) 471
SatI GCNGC 4 cut(s) 59, 364, 408, 438
Sau3AI GATC 2 cut(s) 509, 712
Sau96I GGNCC 1 cut(s) 733
SchI GAGTC 1 cut(s) 93
ScrFI CCNGG 4 cut(s) 90, 188, 609, 848
SduI GDGCHC 5 cut(s) 194, 314, 534, 545, 783
SfaNI GCATC 5 cut(s) 241, 382, 514, 621, 775
SfcI CTRYAG 1 cut(s) 451
SfuI TTCGAA 1 cut(s) 163
SmiMI CAYNNNNRTG 1 cut(s) 501
SpeI ACTAGT 1 cut(s) 872
Sse9I AATT 6 cut(s) 17, 159, 169, 342, 474, 484
SsiI CCGC 7 cut(s) 59, 65, 300, 364, 668, 691, 946
SspMI CTAG 1 cut(s) 873
SstI GAGCTC 2 cut(s) 534, 783
StyD4I CCNGG 4 cut(s) 88, 186, 607, 846
StyI CCWWGG 1 cut(s) 957
TaaI ACNGT 5 cut(s) 219, 634, 859, 977, 990
TaiI ACGT 2 cut(s) 148, 246
TaqI TCGA 4 cut(s) 163, 412, 783, 791
TasI AATT 6 cut(s) 17, 159, 169, 342, 474, 484
TauI GCSGC 2 cut(s) 61, 366
TfiI GAWTC 2 cut(s) 770, 939
Tru1I TTAA 1 cut(s) 471
Tru9I TTAA 1 cut(s) 471
TscAI CASTG 3 cut(s) 436, 580, 637
TseFI GTSAC 1 cut(s) 967
TseI GCWGC 2 cut(s) 407, 437
Tsp45I GTSAC 1 cut(s) 967
TspDTI ATGAA 3 cut(s) 35, 96, 612
TspGWI ACGGA 2 cut(s) 363, 756
TspRI CASTG 3 cut(s) 436, 580, 637
XapI RAATTY 1 cut(s) 17
XmnI GAANNNNTTC 1 cut(s) 169
XspI CTAG 1 cut(s) 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.