Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001557.1

Orthogroup ID

OG0016034

Physical Location & Seq

Genomic Coordinates Forward (+)

74655 .. 76122

Gene Structure 1468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001557.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

atgttacaaatcccaaaattcttgcagtcctccactcaatgccttcatcttctgacgccgcaaccgccactacccattctacaagtcccaggtgtacctacttcttcatcttttccttccatcaaacaatgctgtaagctatcacgtagagaacttgcaattcgaagcaattctctgttacttctcctcctgggctcgcagagcattgaggcttttctaccgtctaaagcagaggccgaggaggatgtggttgatgccggtagcaatgcacaagaacaaagttcaaacgctactcctacttgcggtgataagagcccaacaaagcgtgcatttcttgatatatcaattgacggagcgcctgttggccgcatggcttttctaccgtctaaagcagaggccgaggaggatgtggttgatgccggtagcaatgcacaagaacaaagttcaaactctactcctacttgcggtgataagagcccaacaaagcgtgcatttcttgatatatcaattgacggagcgcctgttggccgcattgtcatcgggatacaggaagatgatgctcctgttggggctgctcgatttcgtaatcttgtcagtggagctgctggggtgagctacagaaggaaagagtttgttaaaattacgccaaattatgtgcaacatggtggtgtgagatcttatggtgtagatgctgagctcgcaaagagcacaggaagcagtttggaagttgataagctcactgaagagtgggagagtttgtatgaaaagtgtccaggcatcaagaacaaggctggcactgtggggattattgtgagagacccttcaaaaccaccgccgaaaatcaagctggttgcgcggaaagggaagctggagattgatcaagaggaggttggtacggccccgaacggaacagagtttgtgatttctaccaaagattcacctgagctcgatgcttcgactttggtggttggaagagttttggaaggtatggaggtcgtggagaggcttggccaggtgaaaaccgtgcaagagaacactagttcgccttattttagggtggccaagctgataggagataagagagctgtcgtcgcagaaagaggattcaaccgcccttacgccaaggtagttgtcacaaactgtggcctgatacagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0055044 GO:0071704 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

385

Amino Acids

41.25

Weight (kDa)

6.28

Isoelectric Point (pI)

48.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74070 AT1G74070
fragaria_vesca	FvH4_5g12840
malus_domestica	MD14G1220500.v1.1
prunus_persica	Prupe.5G215800_v2.0.a1 Prupe.5G215800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0184401
rosa_laevigata	RLG00000004979
rosa_multiflora	Rmu_sc0001557.1_g000019
rosa_roxburghii	Rroxscaffold_3G00269660
rosa_samantha	Rh7AG080300 Rh7BG066900 Rh7CG067200 Rh7DG066900
rosa_wichuraiana	Rw7G005500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	856
AciI	CCGC	9 cut(s)	59, 65, 303, 367, 465, 529, 833, 856, 1111
AcoI	YGGCCR	4 cut(s)	364, 526, 1009, 1059
AcsI	RAATTY	1 cut(s)	17
AcuI	CTGAAG	1 cut(s)	762
AcyI	GRCGYC	1 cut(s)	56
AfaI	GTAC	2 cut(s)	96, 895
AfiI	CCNNNNNNNGG	2 cut(s)	302, 464
AgsI	TTSAA	4 cut(s)	285, 447, 825, 1108
AhlI	ACTAGT	1 cut(s)	1037
AjnI	CCWGG	4 cut(s)	88, 189, 772, 1011
Alw21I	GWGCWC	3 cut(s)	699, 710, 948
Alw26I	GTCTC	1 cut(s)	810
AoxI	GGCC	8 cut(s)	234, 364, 396, 526, 897, 1009, 1059, 1144
ApeKI	GCWGC	2 cut(s)	572, 602
ApoI	RAATTY	1 cut(s)	17
Asp700I	GAANNNNTTC	1 cut(s)	169
AspLEI	GCGC	3 cut(s)	358, 520, 856
AspS9I	GGNCC	1 cut(s)	898
AsuHPI	GGTGA	5 cut(s)	317, 479, 622, 930, 1027
AsuII	TTCGAA	1 cut(s)	163
BalI	TGGCCA	2 cut(s)	1011, 1061
BanII	GRGCYC	5 cut(s)	197, 317, 479, 699, 948
Bbv12I	GWGCWC	3 cut(s)	699, 710, 948
BbvI	GCAGC	2 cut(s)	559, 589
BccI	CCATC	1 cut(s)	128
BceAI	ACGGC	1 cut(s)	912
BcgI	CGANNNNNNTGC	2 cut(s)	520, 554
BciT130I	CCWGG	4 cut(s)	90, 191, 774, 1013
BciVI	GTATCC	1 cut(s)	537
BclI	TGATCA	1 cut(s)	877
BcoDI	GTCTC	1 cut(s)	810
BcuI	ACTAGT	1 cut(s)	1037
BfaI	CTAG	1 cut(s)	1038
BfmI	CTRYAG	1 cut(s)	616
BfoI	RGCGCY	2 cut(s)	359, 521
BfuI	GTATCC	1 cut(s)	537
BglII	AGATCT	1 cut(s)	674
BisI	GCNGC	5 cut(s)	59, 367, 529, 573, 603
BlpI	GCTNAGC	1 cut(s)	693
BlsI	GCNGC	5 cut(s)	60, 368, 530, 574, 604
Bme1390I	CCNGG	4 cut(s)	90, 191, 774, 1013
BmgT120I	GGNCC	1 cut(s)	898
BmiI	GGNNCC	1 cut(s)	900
BmrFI	CCNGG	4 cut(s)	90, 191, 774, 1013
BmsI	GCATC	6 cut(s)	244, 406, 547, 679, 786, 940
BpmI	CTGGAG	1 cut(s)	890
Bpu10I	CCTNAGC	1 cut(s)	942
Bpu1102I	GCTNAGC	1 cut(s)	693
Bpu14I	TTCGAA	1 cut(s)	163
BsaAI	YACGTR	1 cut(s)	146
BsaHI	GRCGYC	1 cut(s)	56
BsaI	GGTCTC	1 cut(s)	810
BsaJI	CCNNGG	5 cut(s)	88, 190, 237, 399, 1122
BsaXI	ACNNNNNCTCC	8 cut(s)	171, 201, 345, 375, 507, 537, 743, 773
Bsc4I	CCNNNNNNNGG	2 cut(s)	302, 464
Bse118I	RCCGGY	2 cut(s)	257, 419
Bse3DI	GCAATG	2 cut(s)	271, 433
BseBI	CCWGG	4 cut(s)	90, 191, 774, 1013
BseDI	CCNNGG	5 cut(s)	88, 190, 237, 399, 1122
BseGI	GGATG	2 cut(s)	250, 412
BseLI	CCNNNNNNNGG	2 cut(s)	302, 464
BseMI	GCAATG	2 cut(s)	271, 433
BseMII	CTCAG	2 cut(s)	684, 933
BseRI	GAGGAG	4 cut(s)	176, 254, 416, 899
BseXI	GCAGC	2 cut(s)	559, 589
BseYI	CCCAGC	1 cut(s)	605
Bsh1236I	CGCG	1 cut(s)	856
BshFI	GGCC	8 cut(s)	236, 366, 398, 528, 899, 1011, 1061, 1146
BsiHKAI	GWGCWC	3 cut(s)	699, 710, 948
BsiSI	CCGG	2 cut(s)	258, 420
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	2 cut(s)	302, 464
BsmAI	GTCTC	1 cut(s)	810
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	8 cut(s)	236, 366, 398, 528, 899, 1011, 1061, 1146
Bso31I	GGTCTC	1 cut(s)	810
Bsp119I	TTCGAA	1 cut(s)	163
Bsp1286I	GDGCHC	6 cut(s)	197, 317, 479, 699, 710, 948
Bsp143I	GATC	2 cut(s)	674, 877
Bsp1720I	GCTNAGC	1 cut(s)	693
BspACI	CCGC	9 cut(s)	59, 65, 303, 367, 465, 529, 833, 856, 1111
BspANI	GGCC	8 cut(s)	236, 366, 398, 528, 899, 1011, 1061, 1146
BspCNI	CTCAG	2 cut(s)	685, 934
BspFNI	CGCG	1 cut(s)	856
BspLI	GGNNCC	1 cut(s)	900
BspT104I	TTCGAA	1 cut(s)	163
BspTNI	GGTCTC	1 cut(s)	810
BsrDI	GCAATG	2 cut(s)	271, 433
BsrFI	RCCGGY	2 cut(s)	257, 419
BssAI	RCCGGY	2 cut(s)	257, 419
BssECI	CCNNGG	5 cut(s)	88, 190, 237, 399, 1122
BssMI	GATC	2 cut(s)	674, 877
BssNI	GRCGYC	1 cut(s)	56
BssT1I	CCWWGG	1 cut(s)	1122
Bst2UI	CCWGG	4 cut(s)	90, 191, 774, 1013
Bst4CI	ACNGT	6 cut(s)	222, 384, 799, 1024, 1142, 1155
Bst6I	CTCTTC	2 cut(s)	738, 967
BstACI	GRCGYC	1 cut(s)	56
BstBAI	YACGTR	1 cut(s)	146
BstBI	TTCGAA	1 cut(s)	163
BstC8I	GCNNGC	5 cut(s)	197, 327, 489, 699, 793
BstDEI	CTNAG	2 cut(s)	693, 942
BstF5I	GGATG	2 cut(s)	250, 412
BstFNI	CGCG	1 cut(s)	856
BstH2I	RGCGCY	2 cut(s)	359, 521
BstHHI	GCGC	3 cut(s)	358, 520, 856
BstKTI	GATC	2 cut(s)	677, 880
BstMAI	GTCTC	1 cut(s)	810
BstMBI	GATC	2 cut(s)	674, 877
BstMWI	GCNNNNNNNGC	6 cut(s)	64, 201, 698, 714, 853, 1091
BstNI	CCWGG	4 cut(s)	90, 191, 774, 1013
BstSCI	CCNGG	4 cut(s)	88, 189, 772, 1011
BstSFI	CTRYAG	1 cut(s)	616
BstUI	CGCG	1 cut(s)	856
BstV1I	GCAGC	2 cut(s)	559, 589
BstX2I	RGATCY	1 cut(s)	674
BstYI	RGATCY	1 cut(s)	674
BsuI	GTATCC	1 cut(s)	537
BsuRI	GGCC	8 cut(s)	236, 366, 398, 528, 899, 1011, 1061, 1146
BtsCI	GGATG	2 cut(s)	250, 412
BtsIMutI	CAGTG	3 cut(s)	601, 738, 795
Cac8I	GCNNGC	5 cut(s)	197, 327, 489, 699, 793
CfoI	GCGC	3 cut(s)	358, 520, 856
Cfr10I	RCCGGY	2 cut(s)	257, 419
Cfr13I	GGNCC	1 cut(s)	898
CseI	GACGC	1 cut(s)	64
Csp6I	GTAC	2 cut(s)	95, 894
CviAII	CATG	2 cut(s)	370, 662
CviQI	GTAC	2 cut(s)	95, 894
DdeI	CTNAG	2 cut(s)	693, 942
DpnI	GATC	2 cut(s)	676, 879
DpnII	GATC	2 cut(s)	674, 877
EaeI	YGGCCR	4 cut(s)	364, 526, 1009, 1059
Eam1104I	CTCTTC	2 cut(s)	738, 967
EarI	CTCTTC	2 cut(s)	738, 967
Ecl136II	GAGCTC	2 cut(s)	697, 946
Eco130I	CCWWGG	1 cut(s)	1122
Eco24I	GRGCYC	5 cut(s)	197, 317, 479, 699, 948
Eco31I	GGTCTC	1 cut(s)	810
Eco53kI	GAGCTC	2 cut(s)	697, 946
Eco57I	CTGAAG	1 cut(s)	762
EcoICRI	GAGCTC	2 cut(s)	697, 946
EcoRII	CCWGG	4 cut(s)	88, 189, 772, 1011
EcoT14I	CCWWGG	1 cut(s)	1122
EcoT38I	GRGCYC	5 cut(s)	197, 317, 479, 699, 948
ErhI	CCWWGG	1 cut(s)	1122
FaeI	CATG	2 cut(s)	373, 665
FaiI	YATR	8 cut(s)	341, 371, 503, 654, 663, 681, 762, 989
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	2 cut(s)	369, 661
FbaI	TGATCA	1 cut(s)	877
Fnu4HI	GCNGC	5 cut(s)	59, 367, 529, 573, 603
FokI	GGATG	2 cut(s)	257, 419
FriOI	GRGCYC	5 cut(s)	197, 317, 479, 699, 948
Fsp4HI	GCNGC	5 cut(s)	59, 367, 529, 573, 603
FspBI	CTAG	1 cut(s)	1038
GlaI	GCGC	3 cut(s)	357, 519, 855
GluI	GCNGC	5 cut(s)	59, 367, 529, 573, 603
GsaI	CCCAGC	1 cut(s)	609
GsuI	CTGGAG	1 cut(s)	890
HaeII	RGCGCY	2 cut(s)	359, 521
HaeIII	GGCC	8 cut(s)	236, 366, 398, 528, 899, 1011, 1061, 1146
HapII	CCGG	2 cut(s)	258, 420
HgaI	GACGC	1 cut(s)	64
HhaI	GCGC	3 cut(s)	358, 520, 856
Hin1I	GRCGYC	1 cut(s)	56
Hin1II	CATG	2 cut(s)	373, 665
Hin6I	GCGC	3 cut(s)	356, 518, 854
HinP1I	GCGC	3 cut(s)	356, 518, 854
HinfI	GANTC	2 cut(s)	935, 1104
HpaII	CCGG	2 cut(s)	258, 420
HphI	GGTGA	5 cut(s)	317, 479, 622, 930, 1027
Hpy166II	GTNNAC	1 cut(s)	95
Hpy188I	TCNGA	1 cut(s)	54
Hpy188III	TCNNGA	5 cut(s)	335, 497, 541, 781, 881
Hpy8I	GTNNAC	1 cut(s)	95
Hpy99I	CGWCG	1 cut(s)	1094
HpyAV	CCTTC	5 cut(s)	53, 126, 615, 831, 977
HpyCH4III	ACNGT	6 cut(s)	222, 384, 799, 1024, 1142, 1155
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	8 cut(s)	25, 158, 269, 329, 431, 491, 658, 1027
HpyF10VI	GCNNNNNNNGC	6 cut(s)	64, 201, 698, 714, 853, 1091
HpyF3I	CTNAG	2 cut(s)	693, 942
HpySE526I	ACGT	1 cut(s)	145
Hsp92I	GRCGYC	1 cut(s)	56
Hsp92II	CATG	2 cut(s)	373, 665
HspAI	GCGC	3 cut(s)	356, 518, 854
Ksp22I	TGATCA	1 cut(s)	877
Kzo9I	GATC	2 cut(s)	674, 877
LmnI	GCTCC	4 cut(s)	353, 515, 565, 599
Lsp1109I	GCAGC	2 cut(s)	559, 589
LweI	GCATC	6 cut(s)	244, 406, 547, 679, 786, 940
MaeI	CTAG	1 cut(s)	1038
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	3 cut(s)	3, 177, 1132
MalI	GATC	2 cut(s)	676, 879
MboI	GATC	2 cut(s)	674, 877
MboII	GAAGA	5 cut(s)	41, 96, 563, 755, 984
MfeI	CAATTG	2 cut(s)	345, 507
MflI	RGATCY	1 cut(s)	674
MhlI	GDGCHC	6 cut(s)	197, 317, 479, 699, 710, 948
MlsI	TGGCCA	2 cut(s)	1011, 1061
MluCI	AATT	7 cut(s)	17, 159, 169, 345, 507, 639, 649
MluNI	TGGCCA	2 cut(s)	1011, 1061
MmeI	TCCRAC	1 cut(s)	949
Mox20I	TGGCCA	2 cut(s)	1011, 1061
MroXI	GAANNNNTTC	1 cut(s)	169
MscI	TGGCCA	2 cut(s)	1011, 1061
MseI	TTAA	1 cut(s)	636
MslI	CAYNNNNRTG	1 cut(s)	666
Msp20I	TGGCCA	2 cut(s)	1011, 1061
MspI	CCGG	2 cut(s)	258, 420
MspR9I	CCNGG	4 cut(s)	90, 191, 774, 1013
MunI	CAATTG	2 cut(s)	345, 507
MvaI	CCWGG	4 cut(s)	90, 191, 774, 1013
MvnI	CGCG	1 cut(s)	856
MwoI	GCNNNNNNNGC	6 cut(s)	64, 201, 698, 714, 853, 1091
NdeII	GATC	2 cut(s)	674, 877
NlaIII	CATG	2 cut(s)	373, 665
NlaIV	GGNNCC	1 cut(s)	900
NmeAIII	GCCGAG	2 cut(s)	262, 424
NmuCI	GTSAC	1 cut(s)	1132
NspV	TTCGAA	1 cut(s)	163
PdmI	GAANNNNTTC	1 cut(s)	169
PfeI	GAWTC	2 cut(s)	935, 1104
PkrI	GCNGC	5 cut(s)	60, 368, 530, 574, 604
Ppu21I	YACGTR	1 cut(s)	146
Psp124BI	GAGCTC	2 cut(s)	699, 948
Psp6I	CCWGG	4 cut(s)	88, 189, 772, 1011
PspFI	CCCAGC	1 cut(s)	605
PspGI	CCWGG	4 cut(s)	88, 189, 772, 1011
PspN4I	GGNNCC	1 cut(s)	900
PspPI	GGNCC	1 cut(s)	898
PsuI	RGATCY	1 cut(s)	674
RsaI	GTAC	2 cut(s)	96, 895
RsaNI	GTAC	2 cut(s)	95, 894
RseI	CAYNNNNRTG	1 cut(s)	666
SacI	GAGCTC	2 cut(s)	699, 948
SaqAI	TTAA	1 cut(s)	636
SatI	GCNGC	5 cut(s)	59, 367, 529, 573, 603
Sau3AI	GATC	2 cut(s)	674, 877
Sau96I	GGNCC	1 cut(s)	898
ScrFI	CCNGG	4 cut(s)	90, 191, 774, 1013
SduI	GDGCHC	6 cut(s)	197, 317, 479, 699, 710, 948
SfaNI	GCATC	6 cut(s)	244, 406, 547, 679, 786, 940
SfcI	CTRYAG	1 cut(s)	616
SfuI	TTCGAA	1 cut(s)	163
SmiMI	CAYNNNNRTG	1 cut(s)	666
SpeI	ACTAGT	1 cut(s)	1037
Sse9I	AATT	7 cut(s)	17, 159, 169, 345, 507, 639, 649
SsiI	CCGC	9 cut(s)	59, 65, 303, 367, 465, 529, 833, 856, 1111
SspMI	CTAG	1 cut(s)	1038
SstI	GAGCTC	2 cut(s)	699, 948
StyD4I	CCNGG	4 cut(s)	88, 189, 772, 1011
StyI	CCWWGG	1 cut(s)	1122
TaaI	ACNGT	6 cut(s)	222, 384, 799, 1024, 1142, 1155
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	4 cut(s)	163, 577, 948, 956
TasI	AATT	7 cut(s)	17, 159, 169, 345, 507, 639, 649
TauI	GCSGC	3 cut(s)	61, 369, 531
TfiI	GAWTC	2 cut(s)	935, 1104
Tru1I	TTAA	1 cut(s)	636
Tru9I	TTAA	1 cut(s)	636
TscAI	CASTG	3 cut(s)	601, 745, 802
TseFI	GTSAC	1 cut(s)	1132
TseI	GCWGC	2 cut(s)	572, 602
Tsp45I	GTSAC	1 cut(s)	1132
TspDTI	ATGAA	3 cut(s)	35, 96, 777
TspGWI	ACGGA	3 cut(s)	366, 528, 921
TspRI	CASTG	3 cut(s)	601, 745, 802
XapI	RAATTY	1 cut(s)	17
XmnI	GAANNNNTTC	1 cut(s)	169
XspI	CTAG	1 cut(s)	1038

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.