Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0016034

Physical Location & Seq

Genomic Coordinates Reverse (-)

5135173 .. 5136478

Gene Structure 1306 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG066900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGTTACAAATCCCAAAATTCTTGCAGTCCTCCACTCAATGCCTTCATCCTCCGACGCTGCAACCGCCACTACCCATTCTACAAGTCCCAGGTGTACCTACTTCTTCATCTTTTCCTTCCATCAAACAATGCTGTAAGCTATCACGTAGAGAACTTGCAATTCGAAGCAATTCTCTGTTACTTCTCCTCCTGGGCTCGCAGAGCATTGAGGCTTTTCTACCGTCTAAAGCAGAGGCCGAGGAGGATGTGGTTGATGCCGGTAGCAATGCACAAGAACAAAGTTCAAACGCTACTCCTACTTGCGGTGATAAGAGCCCAACAAAGCGTGCATTTCTTGATATATCAATTGACGGAGCGCCTGTTGGCCGCATTGTCATCGGGATACAGGAAGATGATGCTCCTGTTGGGGCTGCTCGATTTCGTAATCTTGTCAGTGGAGCTGCTGGGGTGAGCTACAGAAGGAAAGAGTTTGTTAAAATTACGCCAAATTATGTGCAACATGGTGGTGTGAGATCTTATGGTGTAGATGCTGAGCTCGCAAAGAGCACAGGAAGCAGTTTGGAAGTTGATAAGCTCACTGAAGAGTGGGAGAGTTTGTATGAAAAATGTCCAGGCATCAAGAACAAGGCTGGCACTGTGGGGATTATTGTGAGAGACCCTTCAAAACCACCGCCGAAAATCAAGCTGGTTGCGCGGAAAGGGAAGCTGGAGATTGATCAAGAGGAGGTTGGTACGGCCCCTAACGGAACAGAGTTTGTGATTTCTACCAAAGATTCACCTGAGCTCGATGCTTCGACTTTGGTGGTTGGAAGAGTTTTGGAAGGTATGGAGGTCGTGGAGAGGCTTGGCCAGGTGAAAACCGTGCAAGAGAACACTAGTTCGCCTTATTTTAGGGTGGCCAAGCTGATAGGAGATAAGAGAGCTGTCGTCGCAGAAAGAGGATTCAACCGCCCTTACGCCAAGGTAGTTGTCACAAACTGTGGCCTGATACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005911 GO:0006464 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0055044 GO:0071704 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pro_isomerase

Protein Analysis

331

Amino Acids

35.65

Weight (kDa)

8.43

Isoelectric Point (pI)

47.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pro_isomerase	PF00160	112 - 292	8.5e-17	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016034)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74070 AT1G74070
fragaria_vesca	FvH4_5g12840
malus_domestica	MD14G1220500.v1.1
prunus_persica	Prupe.5G215800_v2.0.a1 Prupe.5G215800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0184401
rosa_laevigata	RLG00000004979
rosa_multiflora	Rmu_sc0001557.1_g000019
rosa_roxburghii	Rroxscaffold_3G00269660
rosa_samantha	Rh7AG080300 Rh7BG066900 Rh7CG067200 Rh7DG066900
rosa_wichuraiana	Rw7G005500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	694
AciI	CCGC	6 cut(s)	65, 303, 367, 671, 694, 949
AcoI	YGGCCR	3 cut(s)	364, 847, 897
AcsI	RAATTY	1 cut(s)	17
AcuI	CTGAAG	1 cut(s)	600
AfaI	GTAC	2 cut(s)	96, 733
AfiI	CCNNNNNNNGG	1 cut(s)	302
AgsI	TTSAA	3 cut(s)	285, 663, 946
AhlI	ACTAGT	1 cut(s)	875
AjnI	CCWGG	4 cut(s)	88, 189, 610, 849
Alw21I	GWGCWC	3 cut(s)	537, 548, 786
Alw26I	GTCTC	1 cut(s)	648
AoxI	GGCC	6 cut(s)	234, 364, 735, 847, 897, 982
ApeKI	GCWGC	3 cut(s)	58, 410, 440
ApoI	RAATTY	1 cut(s)	17
Asp700I	GAANNNNTTC	1 cut(s)	169
AspLEI	GCGC	2 cut(s)	358, 694
AspS9I	GGNCC	1 cut(s)	736
AsuHPI	GGTGA	4 cut(s)	317, 460, 768, 865
AsuII	TTCGAA	1 cut(s)	163
BalI	TGGCCA	2 cut(s)	849, 899
BanII	GRGCYC	4 cut(s)	197, 317, 537, 786
Bbv12I	GWGCWC	3 cut(s)	537, 548, 786
BbvI	GCAGC	3 cut(s)	45, 397, 427
BccI	CCATC	1 cut(s)	128
BceAI	ACGGC	1 cut(s)	750
BcgI	CGANNNNNNTGC	2 cut(s)	358, 392
BciT130I	CCWGG	4 cut(s)	90, 191, 612, 851
BciVI	GTATCC	1 cut(s)	375
BclI	TGATCA	1 cut(s)	715
BcoDI	GTCTC	1 cut(s)	648
BcuI	ACTAGT	1 cut(s)	875
BfaI	CTAG	1 cut(s)	876
BfmI	CTRYAG	1 cut(s)	454
BfoI	RGCGCY	1 cut(s)	359
BfuI	GTATCC	1 cut(s)	375
BglII	AGATCT	1 cut(s)	512
BisI	GCNGC	4 cut(s)	59, 367, 411, 441
BlpI	GCTNAGC	1 cut(s)	531
BlsI	GCNGC	4 cut(s)	60, 368, 412, 442
Bme1390I	CCNGG	4 cut(s)	90, 191, 612, 851
BmgT120I	GGNCC	1 cut(s)	736
BmiI	GGNNCC	1 cut(s)	738
BmrFI	CCNGG	4 cut(s)	90, 191, 612, 851
BmsI	GCATC	5 cut(s)	244, 385, 517, 624, 778
BpmI	CTGGAG	1 cut(s)	728
Bpu10I	CCTNAGC	1 cut(s)	780
Bpu1102I	GCTNAGC	1 cut(s)	531
Bpu14I	TTCGAA	1 cut(s)	163
BsaAI	YACGTR	1 cut(s)	146
BsaI	GGTCTC	1 cut(s)	648
BsaJI	CCNNGG	4 cut(s)	88, 190, 237, 960
BsaXI	ACNNNNNCTCC	6 cut(s)	171, 201, 345, 375, 581, 611
Bsc4I	CCNNNNNNNGG	1 cut(s)	302
Bse118I	RCCGGY	1 cut(s)	257
Bse3DI	GCAATG	1 cut(s)	271
BseBI	CCWGG	4 cut(s)	90, 191, 612, 851
BseDI	CCNNGG	4 cut(s)	88, 190, 237, 960
BseGI	GGATG	2 cut(s)	46, 250
BseLI	CCNNNNNNNGG	1 cut(s)	302
BseMI	GCAATG	1 cut(s)	271
BseMII	CTCAG	2 cut(s)	522, 771
BseRI	GAGGAG	3 cut(s)	176, 254, 737
BseXI	GCAGC	3 cut(s)	45, 397, 427
BseYI	CCCAGC	1 cut(s)	443
Bsh1236I	CGCG	1 cut(s)	694
BshFI	GGCC	6 cut(s)	236, 366, 737, 849, 899, 984
BsiHKAI	GWGCWC	3 cut(s)	537, 548, 786
BsiSI	CCGG	1 cut(s)	258
BslFI	GGGAC	1 cut(s)	71
BslI	CCNNNNNNNGG	1 cut(s)	302
BsmAI	GTCTC	1 cut(s)	648
BsmFI	GGGAC	1 cut(s)	71
BsnI	GGCC	6 cut(s)	236, 366, 737, 849, 899, 984
Bso31I	GGTCTC	1 cut(s)	648
Bsp119I	TTCGAA	1 cut(s)	163
Bsp1286I	GDGCHC	5 cut(s)	197, 317, 537, 548, 786
Bsp143I	GATC	2 cut(s)	512, 715
Bsp1720I	GCTNAGC	1 cut(s)	531
BspACI	CCGC	6 cut(s)	65, 303, 367, 671, 694, 949
BspANI	GGCC	6 cut(s)	236, 366, 737, 849, 899, 984
BspCNI	CTCAG	2 cut(s)	523, 772
BspFNI	CGCG	1 cut(s)	694
BspLI	GGNNCC	1 cut(s)	738
BspT104I	TTCGAA	1 cut(s)	163
BspTNI	GGTCTC	1 cut(s)	648
BsrDI	GCAATG	1 cut(s)	271
BsrFI	RCCGGY	1 cut(s)	257
BssAI	RCCGGY	1 cut(s)	257
BssECI	CCNNGG	4 cut(s)	88, 190, 237, 960
BssMI	GATC	2 cut(s)	512, 715
BssT1I	CCWWGG	1 cut(s)	960
Bst2UI	CCWGG	4 cut(s)	90, 191, 612, 851
Bst4CI	ACNGT	5 cut(s)	222, 637, 862, 980, 993
Bst6I	CTCTTC	2 cut(s)	576, 805
BstBAI	YACGTR	1 cut(s)	146
BstBI	TTCGAA	1 cut(s)	163
BstC8I	GCNNGC	4 cut(s)	197, 327, 537, 631
BstDEI	CTNAG	2 cut(s)	531, 780
BstF5I	GGATG	2 cut(s)	46, 250
BstFNI	CGCG	1 cut(s)	694
BstH2I	RGCGCY	1 cut(s)	359
BstHHI	GCGC	2 cut(s)	358, 694
BstKTI	GATC	2 cut(s)	515, 718
BstMAI	GTCTC	1 cut(s)	648
BstMBI	GATC	2 cut(s)	512, 715
BstMWI	GCNNNNNNNGC	6 cut(s)	64, 201, 536, 552, 691, 929
BstNI	CCWGG	4 cut(s)	90, 191, 612, 851
BstSCI	CCNGG	4 cut(s)	88, 189, 610, 849
BstSFI	CTRYAG	1 cut(s)	454
BstUI	CGCG	1 cut(s)	694
BstV1I	GCAGC	3 cut(s)	45, 397, 427
BstX2I	RGATCY	1 cut(s)	512
BstYI	RGATCY	1 cut(s)	512
BsuI	GTATCC	1 cut(s)	375
BsuRI	GGCC	6 cut(s)	236, 366, 737, 849, 899, 984
BtsCI	GGATG	2 cut(s)	46, 250
BtsIMutI	CAGTG	3 cut(s)	439, 576, 633
Cac8I	GCNNGC	4 cut(s)	197, 327, 537, 631
CfoI	GCGC	2 cut(s)	358, 694
Cfr10I	RCCGGY	1 cut(s)	257
Cfr13I	GGNCC	1 cut(s)	736
CseI	GACGC	1 cut(s)	64
Csp6I	GTAC	2 cut(s)	95, 732
CviAII	CATG	1 cut(s)	500
CviQI	GTAC	2 cut(s)	95, 732
DdeI	CTNAG	2 cut(s)	531, 780
DpnI	GATC	2 cut(s)	514, 717
DpnII	GATC	2 cut(s)	512, 715
EaeI	YGGCCR	3 cut(s)	364, 847, 897
Eam1104I	CTCTTC	2 cut(s)	576, 805
EarI	CTCTTC	2 cut(s)	576, 805
Ecl136II	GAGCTC	2 cut(s)	535, 784
Eco130I	CCWWGG	1 cut(s)	960
Eco24I	GRGCYC	4 cut(s)	197, 317, 537, 786
Eco31I	GGTCTC	1 cut(s)	648
Eco53kI	GAGCTC	2 cut(s)	535, 784
Eco57I	CTGAAG	1 cut(s)	600
EcoICRI	GAGCTC	2 cut(s)	535, 784
EcoRII	CCWGG	4 cut(s)	88, 189, 610, 849
EcoT14I	CCWWGG	1 cut(s)	960
EcoT38I	GRGCYC	4 cut(s)	197, 317, 537, 786
ErhI	CCWWGG	1 cut(s)	960
FaeI	CATG	1 cut(s)	503
FaiI	YATR	6 cut(s)	341, 492, 501, 519, 600, 827
FaqI	GGGAC	1 cut(s)	71
FatI	CATG	1 cut(s)	499
FbaI	TGATCA	1 cut(s)	715
Fnu4HI	GCNGC	4 cut(s)	59, 367, 411, 441
FokI	GGATG	2 cut(s)	33, 257
FriOI	GRGCYC	4 cut(s)	197, 317, 537, 786
Fsp4HI	GCNGC	4 cut(s)	59, 367, 411, 441
FspBI	CTAG	1 cut(s)	876
GlaI	GCGC	2 cut(s)	357, 693
GluI	GCNGC	4 cut(s)	59, 367, 411, 441
GsaI	CCCAGC	1 cut(s)	447
GsuI	CTGGAG	1 cut(s)	728
HaeII	RGCGCY	1 cut(s)	359
HaeIII	GGCC	6 cut(s)	236, 366, 737, 849, 899, 984
HapII	CCGG	1 cut(s)	258
HgaI	GACGC	1 cut(s)	64
HhaI	GCGC	2 cut(s)	358, 694
Hin1II	CATG	1 cut(s)	503
Hin6I	GCGC	2 cut(s)	356, 692
HinP1I	GCGC	2 cut(s)	356, 692
HinfI	GANTC	2 cut(s)	773, 942
HpaII	CCGG	1 cut(s)	258
HphI	GGTGA	4 cut(s)	317, 460, 768, 865
Hpy166II	GTNNAC	1 cut(s)	95
Hpy188I	TCNGA	1 cut(s)	54
Hpy188III	TCNNGA	4 cut(s)	335, 379, 619, 719
Hpy8I	GTNNAC	1 cut(s)	95
Hpy99I	CGWCG	2 cut(s)	58, 932
HpyAV	CCTTC	5 cut(s)	53, 126, 453, 669, 815
HpyCH4III	ACNGT	5 cut(s)	222, 637, 862, 980, 993
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	7 cut(s)	25, 61, 158, 269, 329, 496, 865
HpyF10VI	GCNNNNNNNGC	6 cut(s)	64, 201, 536, 552, 691, 929
HpyF3I	CTNAG	2 cut(s)	531, 780
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	1 cut(s)	503
HspAI	GCGC	2 cut(s)	356, 692
Ksp22I	TGATCA	1 cut(s)	715
Kzo9I	GATC	2 cut(s)	512, 715
LmnI	GCTCC	3 cut(s)	353, 403, 437
Lsp1109I	GCAGC	3 cut(s)	45, 397, 427
LweI	GCATC	5 cut(s)	244, 385, 517, 624, 778
MaeI	CTAG	1 cut(s)	876
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	3 cut(s)	3, 177, 970
MalI	GATC	2 cut(s)	514, 717
MboI	GATC	2 cut(s)	512, 715
MboII	GAAGA	4 cut(s)	96, 401, 593, 822
MfeI	CAATTG	1 cut(s)	345
MflI	RGATCY	1 cut(s)	512
MhlI	GDGCHC	5 cut(s)	197, 317, 537, 548, 786
MlsI	TGGCCA	2 cut(s)	849, 899
MluCI	AATT	6 cut(s)	17, 159, 169, 345, 477, 487
MluNI	TGGCCA	2 cut(s)	849, 899
MmeI	TCCRAC	2 cut(s)	77, 787
Mox20I	TGGCCA	2 cut(s)	849, 899
MroXI	GAANNNNTTC	1 cut(s)	169
MscI	TGGCCA	2 cut(s)	849, 899
MseI	TTAA	1 cut(s)	474
MslI	CAYNNNNRTG	1 cut(s)	504
Msp20I	TGGCCA	2 cut(s)	849, 899
MspI	CCGG	1 cut(s)	258
MspR9I	CCNGG	4 cut(s)	90, 191, 612, 851
MunI	CAATTG	1 cut(s)	345
MvaI	CCWGG	4 cut(s)	90, 191, 612, 851
MvnI	CGCG	1 cut(s)	694
MwoI	GCNNNNNNNGC	6 cut(s)	64, 201, 536, 552, 691, 929
NdeII	GATC	2 cut(s)	512, 715
NlaIII	CATG	1 cut(s)	503
NlaIV	GGNNCC	1 cut(s)	738
NmeAIII	GCCGAG	1 cut(s)	262
NmuCI	GTSAC	1 cut(s)	970
NspV	TTCGAA	1 cut(s)	163
PdmI	GAANNNNTTC	1 cut(s)	169
PfeI	GAWTC	2 cut(s)	773, 942
PkrI	GCNGC	4 cut(s)	60, 368, 412, 442
Ppu21I	YACGTR	1 cut(s)	146
Psp124BI	GAGCTC	2 cut(s)	537, 786
Psp6I	CCWGG	4 cut(s)	88, 189, 610, 849
PspFI	CCCAGC	1 cut(s)	443
PspGI	CCWGG	4 cut(s)	88, 189, 610, 849
PspN4I	GGNNCC	1 cut(s)	738
PspPI	GGNCC	1 cut(s)	736
PsuI	RGATCY	1 cut(s)	512
RsaI	GTAC	2 cut(s)	96, 733
RsaNI	GTAC	2 cut(s)	95, 732
RseI	CAYNNNNRTG	1 cut(s)	504
SacI	GAGCTC	2 cut(s)	537, 786
SaqAI	TTAA	1 cut(s)	474
SatI	GCNGC	4 cut(s)	59, 367, 411, 441
Sau3AI	GATC	2 cut(s)	512, 715
Sau96I	GGNCC	1 cut(s)	736
ScrFI	CCNGG	4 cut(s)	90, 191, 612, 851
SduI	GDGCHC	5 cut(s)	197, 317, 537, 548, 786
SfaNI	GCATC	5 cut(s)	244, 385, 517, 624, 778
SfcI	CTRYAG	1 cut(s)	454
SfuI	TTCGAA	1 cut(s)	163
SmiMI	CAYNNNNRTG	1 cut(s)	504
SpeI	ACTAGT	1 cut(s)	875
Sse9I	AATT	6 cut(s)	17, 159, 169, 345, 477, 487
SsiI	CCGC	6 cut(s)	65, 303, 367, 671, 694, 949
SspMI	CTAG	1 cut(s)	876
SstI	GAGCTC	2 cut(s)	537, 786
StyD4I	CCNGG	4 cut(s)	88, 189, 610, 849
StyI	CCWWGG	1 cut(s)	960
TaaI	ACNGT	5 cut(s)	222, 637, 862, 980, 993
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	4 cut(s)	163, 415, 786, 794
TasI	AATT	6 cut(s)	17, 159, 169, 345, 477, 487
TauI	GCSGC	1 cut(s)	369
TfiI	GAWTC	2 cut(s)	773, 942
Tru1I	TTAA	1 cut(s)	474
Tru9I	TTAA	1 cut(s)	474
TscAI	CASTG	3 cut(s)	439, 583, 640
TseFI	GTSAC	1 cut(s)	970
TseI	GCWGC	3 cut(s)	58, 410, 440
Tsp45I	GTSAC	1 cut(s)	970
TspDTI	ATGAA	3 cut(s)	35, 96, 615
TspGWI	ACGGA	2 cut(s)	366, 759
TspRI	CASTG	3 cut(s)	439, 583, 640
XapI	RAATTY	1 cut(s)	17
XmnI	GAANNNNTTC	1 cut(s)	169
XspI	CTAG	1 cut(s)	876

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.