RLG00000004979

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0016034
Physical Location & Seq
Forward (+)
64140472 .. 64141701
1230 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004979

Sequence Viewer

Length: 999 bp
ATGTTACAAATCCCAAAATTCTTGCAGTCCTCCACTCAATGCCTTCATCCTCCGACGCCGCAACCGCCACTACCCATTCTACAAGTCCCAGGTGTACCTACTTCTTCATCTTTTCCTTCCATCAAACAATGCTGTAAGCTATCACGTAGAGAACTTGCAATTCGAAGCAATTCTCTGTTACTTCTCCTCCTGGGCTCGCAGAGCATTGAGGCTTTTCTACCGTCTAAAGCAGAGGCCGAGGAGGATGTGGTTGATGCCGGTAGCAATGCACAAGAACAAAGTTCAAACGCTACTCCTACTTGTGGTGATAAGAGCCCAACAAAGCGTGCATTTCTTGATATATCAATTGACGGAGAGCCTGTTGGCCGCATTGTCATCGGGATACAGGAAGATGATGCTCCTGTTGGGGCTGCTCGATTTCGTAATCTTGTCAGTGGAGCTGCTGGGGTGAGCTACAGAAGGAAAGAGTTTGTTAAAATTACGCCAAATTATGTGCAACATGGTGGTGTGAGATCTTATGGTGTAGATGCTGAGCTCGCAAAGAGCACAGGAAGCAGTTTGGAGGTTGATAAGCTCACTGAAGAGTGGGAGAGTTTGTATGAAAAGTGTCCAGGCATCAAGAACAAGGCTGGCACTGTGGGCGTTATTGTGAGAGACCCTTCAAAACCACCGCCGAAAATCAAGCTGGTTGCGCGGAAAGGGAAGCTGGAGATTGATCAAGAGGAGGTTGGTACGGCCCCTAACGGAACAGAGTTTGTGATTTCTGCCAAAGATTCACCAGAGCTCGATGCTTCGACTTTGGTGGTTGGAAGAGTTTTGGAAGGTATGGAGGTCGTGGAGAGGCTTGGCCAGGTGAAAACCGTGCAAGAGAACACTAGTTCACCTTATTTTAGCTTCTTATACTTCAATCCTCCTGGAGTTCCTTCCACCATTGTGATGATATACACTAACAAGCAGGTGCTGTTTTATTGGCAGGGTGGCCAAGCTGATAGGAGATAA

Protein Analysis

333

Amino Acids

36.0

Weight (kDa)

6.25

Isoelectric Point (pI)

50.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 112 - 289 3.5e-16 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016034)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74070 AT1G74070
fragaria_vesca FvH4_5g12840
malus_domestica MD14G1220500.v1.1
prunus_persica Prupe.5G215800_v2.0.a1 Prupe.5G215800_v2.0.a1
rosa_chinensis RchiOBHm_Chr7g0184401
rosa_laevigata RLG00000004979
rosa_multiflora Rmu_sc0001557.1_g000019
rosa_roxburghii Rroxscaffold_3G00269660
rosa_samantha Rh7AG080300 Rh7BG066900 Rh7CG067200 Rh7DG066900
rosa_wichuraiana Rw7G005500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 946
Acc36I ACCTGC 1 cut(s) 946
AccII CGCG 1 cut(s) 694
AciI CCGC 5 cut(s) 59, 65, 367, 671, 694
AcoI YGGCCR 3 cut(s) 364, 847, 979
AcsI RAATTY 1 cut(s) 17
AcuI CTGAAG 1 cut(s) 600
AcyI GRCGYC 1 cut(s) 56
AfaI GTAC 2 cut(s) 96, 733
AfiI CCNNNNNNNGG 1 cut(s) 302
AgsI TTSAA 3 cut(s) 285, 663, 907
AhlI ACTAGT 1 cut(s) 875
AjnI CCWGG 5 cut(s) 88, 189, 610, 849, 913
AleI CACNNNNGTG 1 cut(s) 932
Alw21I GWGCWC 3 cut(s) 537, 548, 786
Alw26I GTCTC 1 cut(s) 648
AlwNI CAGNNNCTG 1 cut(s) 961
AoxI GGCC 5 cut(s) 234, 364, 735, 847, 979
ApeKI GCWGC 2 cut(s) 410, 440
ApoI RAATTY 1 cut(s) 17
Asp700I GAANNNNTTC 1 cut(s) 169
AspLEI GCGC 1 cut(s) 694
AspS9I GGNCC 1 cut(s) 736
AsuHPI GGTGA 5 cut(s) 317, 460, 768, 865, 873
AsuII TTCGAA 1 cut(s) 163
BalI TGGCCA 2 cut(s) 849, 981
BanII GRGCYC 4 cut(s) 197, 317, 537, 786
Bbv12I GWGCWC 3 cut(s) 537, 548, 786
BbvI GCAGC 2 cut(s) 397, 427
BccI CCATC 1 cut(s) 128
BceAI ACGGC 1 cut(s) 750
BcgI CGANNNNNNTGC 2 cut(s) 358, 392
BciT130I CCWGG 5 cut(s) 90, 191, 612, 851, 915
BciVI GTATCC 1 cut(s) 375
BclI TGATCA 1 cut(s) 715
BcoDI GTCTC 1 cut(s) 648
BcuI ACTAGT 1 cut(s) 875
BfaI CTAG 1 cut(s) 876
BfmI CTRYAG 1 cut(s) 454
BfuAI ACCTGC 1 cut(s) 946
BfuI GTATCC 1 cut(s) 375
BglII AGATCT 1 cut(s) 512
BisI GCNGC 4 cut(s) 59, 367, 411, 441
BlpI GCTNAGC 1 cut(s) 531
BlsI GCNGC 4 cut(s) 60, 368, 412, 442
Bme1390I CCNGG 5 cut(s) 90, 191, 612, 851, 915
BmgT120I GGNCC 1 cut(s) 736
BmiI GGNNCC 1 cut(s) 738
BmrFI CCNGG 5 cut(s) 90, 191, 612, 851, 915
BmsI GCATC 5 cut(s) 244, 385, 517, 624, 778
BpmI CTGGAG 2 cut(s) 728, 936
Bpu1102I GCTNAGC 1 cut(s) 531
Bpu14I TTCGAA 1 cut(s) 163
BsaAI YACGTR 1 cut(s) 146
BsaHI GRCGYC 1 cut(s) 56
BsaI GGTCTC 1 cut(s) 648
BsaJI CCNNGG 3 cut(s) 88, 190, 237
BsaXI ACNNNNNCTCC 6 cut(s) 171, 201, 345, 375, 581, 611
Bsc4I CCNNNNNNNGG 1 cut(s) 302
Bse118I RCCGGY 1 cut(s) 257
Bse3DI GCAATG 1 cut(s) 271
BseBI CCWGG 5 cut(s) 90, 191, 612, 851, 915
BseDI CCNNGG 3 cut(s) 88, 190, 237
BseGI GGATG 2 cut(s) 46, 250
BseLI CCNNNNNNNGG 1 cut(s) 302
BseMI GCAATG 1 cut(s) 271
BseMII CTCAG 1 cut(s) 522
BseRI GAGGAG 3 cut(s) 176, 254, 737
BseXI GCAGC 2 cut(s) 397, 427
BseYI CCCAGC 1 cut(s) 443
Bsh1236I CGCG 1 cut(s) 694
BshFI GGCC 5 cut(s) 236, 366, 737, 849, 981
BsiHKAI GWGCWC 3 cut(s) 537, 548, 786
BsiSI CCGG 1 cut(s) 258
BslFI GGGAC 1 cut(s) 71
BslI CCNNNNNNNGG 1 cut(s) 302
BsmAI GTCTC 1 cut(s) 648
BsmFI GGGAC 1 cut(s) 71
BsnI GGCC 5 cut(s) 236, 366, 737, 849, 981
Bso31I GGTCTC 1 cut(s) 648
Bsp119I TTCGAA 1 cut(s) 163
Bsp1286I GDGCHC 5 cut(s) 197, 317, 537, 548, 786
Bsp143I GATC 2 cut(s) 512, 715
Bsp1720I GCTNAGC 1 cut(s) 531
BspACI CCGC 5 cut(s) 59, 65, 367, 671, 694
BspANI GGCC 5 cut(s) 236, 366, 737, 849, 981
BspCNI CTCAG 1 cut(s) 523
BspFNI CGCG 1 cut(s) 694
BspLI GGNNCC 1 cut(s) 738
BspMI ACCTGC 1 cut(s) 946
BspT104I TTCGAA 1 cut(s) 163
BspTNI GGTCTC 1 cut(s) 648
BsrDI GCAATG 1 cut(s) 271
BsrFI RCCGGY 1 cut(s) 257
BssAI RCCGGY 1 cut(s) 257
BssECI CCNNGG 3 cut(s) 88, 190, 237
BssMI GATC 2 cut(s) 512, 715
BssNI GRCGYC 1 cut(s) 56
Bst2UI CCWGG 5 cut(s) 90, 191, 612, 851, 915
Bst4CI ACNGT 3 cut(s) 222, 637, 862
Bst6I CTCTTC 2 cut(s) 576, 805
BstACI GRCGYC 1 cut(s) 56
BstBAI YACGTR 1 cut(s) 146
BstBI TTCGAA 1 cut(s) 163
BstC8I GCNNGC 4 cut(s) 197, 327, 537, 631
BstDEI CTNAG 1 cut(s) 531
BstF5I GGATG 2 cut(s) 46, 250
BstFNI CGCG 1 cut(s) 694
BstHHI GCGC 1 cut(s) 694
BstKTI GATC 2 cut(s) 515, 718
BstMAI GTCTC 1 cut(s) 648
BstMBI GATC 2 cut(s) 512, 715
BstMWI GCNNNNNNNGC 6 cut(s) 64, 201, 536, 552, 639, 691
BstNI CCWGG 5 cut(s) 90, 191, 612, 851, 915
BstSCI CCNGG 5 cut(s) 88, 189, 610, 849, 913
BstSFI CTRYAG 1 cut(s) 454
BstUI CGCG 1 cut(s) 694
BstV1I GCAGC 2 cut(s) 397, 427
BstX2I RGATCY 1 cut(s) 512
BstYI RGATCY 1 cut(s) 512
BsuI GTATCC 1 cut(s) 375
BsuRI GGCC 5 cut(s) 236, 366, 737, 849, 981
BtsCI GGATG 2 cut(s) 46, 250
BtsIMutI CAGTG 3 cut(s) 439, 576, 633
BveI ACCTGC 1 cut(s) 946
Cac8I GCNNGC 4 cut(s) 197, 327, 537, 631
CaiI CAGNNNCTG 1 cut(s) 961
CfoI GCGC 1 cut(s) 694
Cfr10I RCCGGY 1 cut(s) 257
Cfr13I GGNCC 1 cut(s) 736
CseI GACGC 1 cut(s) 64
Csp6I GTAC 2 cut(s) 95, 732
CviAII CATG 1 cut(s) 500
CviQI GTAC 2 cut(s) 95, 732
DdeI CTNAG 1 cut(s) 531
DpnI GATC 2 cut(s) 514, 717
DpnII GATC 2 cut(s) 512, 715
EaeI YGGCCR 3 cut(s) 364, 847, 979
Eam1104I CTCTTC 2 cut(s) 576, 805
EarI CTCTTC 2 cut(s) 576, 805
Ecl136II GAGCTC 2 cut(s) 535, 784
Eco24I GRGCYC 4 cut(s) 197, 317, 537, 786
Eco31I GGTCTC 1 cut(s) 648
Eco53kI GAGCTC 2 cut(s) 535, 784
Eco57I CTGAAG 1 cut(s) 600
EcoICRI GAGCTC 2 cut(s) 535, 784
EcoRII CCWGG 5 cut(s) 88, 189, 610, 849, 913
EcoT38I GRGCYC 4 cut(s) 197, 317, 537, 786
FaeI CATG 1 cut(s) 503
FaiI YATR 8 cut(s) 341, 492, 501, 519, 600, 827, 901, 943
FaqI GGGAC 1 cut(s) 71
FatI CATG 1 cut(s) 499
FbaI TGATCA 1 cut(s) 715
Fnu4HI GCNGC 4 cut(s) 59, 367, 411, 441
FokI GGATG 2 cut(s) 33, 257
FriOI GRGCYC 4 cut(s) 197, 317, 537, 786
Fsp4HI GCNGC 4 cut(s) 59, 367, 411, 441
FspBI CTAG 1 cut(s) 876
GlaI GCGC 1 cut(s) 693
GluI GCNGC 4 cut(s) 59, 367, 411, 441
GsaI CCCAGC 1 cut(s) 447
GsuI CTGGAG 2 cut(s) 728, 936
HaeIII GGCC 5 cut(s) 236, 366, 737, 849, 981
HapII CCGG 1 cut(s) 258
HgaI GACGC 1 cut(s) 64
HhaI GCGC 1 cut(s) 694
Hin1I GRCGYC 1 cut(s) 56
Hin1II CATG 1 cut(s) 503
Hin6I GCGC 1 cut(s) 692
HinP1I GCGC 1 cut(s) 692
HinfI GANTC 1 cut(s) 773
HpaII CCGG 1 cut(s) 258
HphI GGTGA 5 cut(s) 317, 460, 768, 865, 873
Hpy166II GTNNAC 2 cut(s) 95, 881
Hpy188I TCNGA 1 cut(s) 54
Hpy188III TCNNGA 4 cut(s) 335, 379, 619, 719
Hpy8I GTNNAC 2 cut(s) 95, 881
Hpy99I CGWCG 1 cut(s) 58
HpyAV CCTTC 6 cut(s) 53, 126, 453, 669, 815, 933
HpyCH4III ACNGT 3 cut(s) 222, 637, 862
HpyCH4IV ACGT 1 cut(s) 145
HpyCH4V TGCA 6 cut(s) 25, 158, 269, 329, 496, 865
HpyF10VI GCNNNNNNNGC 6 cut(s) 64, 201, 536, 552, 639, 691
HpyF3I CTNAG 1 cut(s) 531
HpySE526I ACGT 1 cut(s) 145
Hsp92I GRCGYC 1 cut(s) 56
Hsp92II CATG 1 cut(s) 503
HspAI GCGC 1 cut(s) 692
Ksp22I TGATCA 1 cut(s) 715
Kzo9I GATC 2 cut(s) 512, 715
LmnI GCTCC 2 cut(s) 403, 437
Lsp1109I GCAGC 2 cut(s) 397, 427
LweI GCATC 5 cut(s) 244, 385, 517, 624, 778
MaeI CTAG 1 cut(s) 876
MaeII ACGT 1 cut(s) 145
MaeIII GTNAC 2 cut(s) 3, 177
MalI GATC 2 cut(s) 514, 717
MboI GATC 2 cut(s) 512, 715
MboII GAAGA 4 cut(s) 96, 401, 593, 822
MfeI CAATTG 1 cut(s) 345
MflI RGATCY 1 cut(s) 512
MhlI GDGCHC 5 cut(s) 197, 317, 537, 548, 786
MlsI TGGCCA 2 cut(s) 849, 981
MluCI AATT 6 cut(s) 17, 159, 169, 345, 477, 487
MluNI TGGCCA 2 cut(s) 849, 981
MmeI TCCRAC 2 cut(s) 77, 787
Mox20I TGGCCA 2 cut(s) 849, 981
MroXI GAANNNNTTC 1 cut(s) 169
MscI TGGCCA 2 cut(s) 849, 981
MseI TTAA 1 cut(s) 474
MslI CAYNNNNRTG 3 cut(s) 504, 932, 935
Msp20I TGGCCA 2 cut(s) 849, 981
MspI CCGG 1 cut(s) 258
MspR9I CCNGG 5 cut(s) 90, 191, 612, 851, 915
MunI CAATTG 1 cut(s) 345
MvaI CCWGG 5 cut(s) 90, 191, 612, 851, 915
MvnI CGCG 1 cut(s) 694
MwoI GCNNNNNNNGC 6 cut(s) 64, 201, 536, 552, 639, 691
NdeII GATC 2 cut(s) 512, 715
NlaIII CATG 1 cut(s) 503
NlaIV GGNNCC 1 cut(s) 738
NmeAIII GCCGAG 1 cut(s) 262
NspV TTCGAA 1 cut(s) 163
OliI CACNNNNGTG 1 cut(s) 932
PaqCI CACCTGC 1 cut(s) 946
PdmI GAANNNNTTC 1 cut(s) 169
PfeI GAWTC 1 cut(s) 773
PfoI TCCNGGA 1 cut(s) 913
PkrI GCNGC 4 cut(s) 60, 368, 412, 442
Ppu21I YACGTR 1 cut(s) 146
Psp124BI GAGCTC 2 cut(s) 537, 786
Psp6I CCWGG 5 cut(s) 88, 189, 610, 849, 913
PspFI CCCAGC 1 cut(s) 443
PspGI CCWGG 5 cut(s) 88, 189, 610, 849, 913
PspN4I GGNNCC 1 cut(s) 738
PspPI GGNCC 1 cut(s) 736
PstNI CAGNNNCTG 1 cut(s) 961
PsuI RGATCY 1 cut(s) 512
RsaI GTAC 2 cut(s) 96, 733
RsaNI GTAC 2 cut(s) 95, 732
RseI CAYNNNNRTG 3 cut(s) 504, 932, 935
SacI GAGCTC 2 cut(s) 537, 786
SaqAI TTAA 1 cut(s) 474
SatI GCNGC 4 cut(s) 59, 367, 411, 441
Sau3AI GATC 2 cut(s) 512, 715
Sau96I GGNCC 1 cut(s) 736
ScrFI CCNGG 5 cut(s) 90, 191, 612, 851, 915
SduI GDGCHC 5 cut(s) 197, 317, 537, 548, 786
SfaNI GCATC 5 cut(s) 244, 385, 517, 624, 778
SfcI CTRYAG 1 cut(s) 454
SfuI TTCGAA 1 cut(s) 163
SmiMI CAYNNNNRTG 3 cut(s) 504, 932, 935
SpeI ACTAGT 1 cut(s) 875
Sse9I AATT 6 cut(s) 17, 159, 169, 345, 477, 487
SsiI CCGC 5 cut(s) 59, 65, 367, 671, 694
SspMI CTAG 1 cut(s) 876
SstI GAGCTC 2 cut(s) 537, 786
StyD4I CCNGG 5 cut(s) 88, 189, 610, 849, 913
TaaI ACNGT 3 cut(s) 222, 637, 862
TaiI ACGT 1 cut(s) 148
TaqI TCGA 4 cut(s) 163, 415, 786, 794
TasI AATT 6 cut(s) 17, 159, 169, 345, 477, 487
TauI GCSGC 2 cut(s) 61, 369
TfiI GAWTC 1 cut(s) 773
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TscAI CASTG 3 cut(s) 439, 583, 640
TseI GCWGC 2 cut(s) 410, 440
TspDTI ATGAA 3 cut(s) 35, 96, 615
TspGWI ACGGA 2 cut(s) 366, 759
TspRI CASTG 3 cut(s) 439, 583, 640
XapI RAATTY 1 cut(s) 17
XmnI GAANNNNTTC 1 cut(s) 169
XspI CTAG 1 cut(s) 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.