AT1G75160

Protein of unknown function (DUF620)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015873
Physical Location & Seq
Forward (+)
28209407 .. 28211826
2420 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G75160.1

Sequence Viewer

Length: 1188 bp
ATGAAAATGAGGAAGCTTTGTCCAAATTTGGACAGAGAAGACGGGTTAGAGACGGTGTTAGAGGTTCCGGTGCCGGAAGAAATGTTTACAAAGATGGGAAGCAACGCCCAAGGGCGGTGGAGGAATATGCACGCTCTCATGAAGGCACACGCCGTTGTGACCGCGGTGGCGACTGATGTAAGAACGCCGGCGTCATCGTCATCGATGAGTAATGTCAACATGCATTTGCAGTCAAAATCAGACAACGAGTTTGTGGCCTTGTTGAAAATCGTAGGAAGTCCTCTTATTCCTTTTCATGTCCCGCTCGAGTTTTGTCTATCCCGACCAATCAACGACACTTCCATCGAGGCGTCGACGGCTAAATACATAGTGCAACAGTACGTGGCAGCGTGCGGAGGTCCAACGGCTTTGAACGCAGTGAAAAGTATGTACGCGGTGGGGCAAGTAAGGATGCAAGGCTCCGAGATGGTTGCTGGAGAGGACGAAGGGACGGGTACGCCGGTGCGACTTGGTAAAGGCAGTTTCGAGGTCGGAGGTTTTGTTTTATGGCAAAAGAATCCAAATCTTTGGTTCTTGGAGCTAGTGGTTTCCGGTTTCAAGATTAGCGCTGGTAGTGACGGCAAAGTGGCTTGGAACCAATCCTCTACTCAACCTTCTCAGGCCCACCGTGGTCCTCCTCGTCCTCTCCGCCGATTTTTTCAGGGACTAGACCCGAGATGCACAGCGAGTTTGTTCTTAGACGCCGTTTGCATCGGTGAACAACCCGTTAACGGTGAAGACTGTTTCGTCTTAAAAGTAGAAACACCGTCAGATATTCTCAAAGCACAATGCTCACCAAACACGGAGGTGATCCACCACACGGTATGGGGTTACTTCAGCCAACGAACCGGACTTCTCGTAAAGTTCGGTGACACAAAACTCGTGAGAGTCAAATCCGGAAGAGGCAAAAACGACGGCGTTTTTTGGGAGACAAGTATGGAGTCCATCATCGACGATTACATATTCGTTGACGCAGTCAACATTGCTCATGGTGGTCAAACCGTGACCACACTCTACCGCTACGGTGGAGCTGTTAATCACCGGAGAAGAATAGAGGAGAAATGGCGTATCGAGGAGGTGGATTTCAATATTTGTGGATTGTGTTTGGAGAGCTTTTTACCACCGTCGGATATCAACAATGATCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF620

Protein Analysis

395

Amino Acids

43.6

Weight (kDa)

6.38

Isoelectric Point (pI)

46.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF620 PF04788 143 - 388 4e-110 Protein of unknown function (DUF620)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015873)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75160
fragaria_vesca FvH4_2g39940
malus_domestica MD08G1034000.v1.1 MD15G1030800.v1.1
prunus_persica Prupe.1G381000_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0300821
rosa_laevigata RLG00000011297
rosa_multiflora Rmu_co8409361.1_g000001 Rmu_sc0008947.1_g000004
rosa_roxburghii Rroxscaffold_7G00167380
rosa_rugosa Rorug06G0299300
rosa_samantha Rh6AG412400 Rh6BG419600 Rh6CG427100 Rh6DG412400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 785
AccB1I GGYRCC 1 cut(s) 70
AccBSI CCGCTC 1 cut(s) 304
AccI GTMKAC 1 cut(s) 353
AccII CGCG 2 cut(s) 164, 434
AccIII TCCGGA 1 cut(s) 935
AciI CCGC 8 cut(s) 115, 162, 164, 302, 393, 434, 688, 1057
AclWI GGATC 1 cut(s) 844
AcsI RAATTY 1 cut(s) 25
AcuI CTGAAG 1 cut(s) 859
AcyI GRCGYC 3 cut(s) 191, 350, 741
AfaI GTAC 3 cut(s) 380, 431, 496
AfeI AGCGCT 1 cut(s) 607
AfiI CCNNNNNNNGG 3 cut(s) 114, 770, 859
AgsI TTSAA 4 cut(s) 265, 412, 598, 1126
AleI CACNNNNGTG 1 cut(s) 845
AluBI AGCT 4 cut(s) 16, 580, 1070, 1152
AluI AGCT 4 cut(s) 16, 580, 1070, 1152
Alw26I GTCTC 2 cut(s) 44, 962
AlwI GGATC 1 cut(s) 844
Ama87I CYCGRG 2 cut(s) 305, 712
Aor13HI TCCGGA 1 cut(s) 935
Aor51HI AGCGCT 1 cut(s) 607
AoxI GGCC 2 cut(s) 255, 660
ApeKI GCWGC 1 cut(s) 386
ApoI RAATTY 1 cut(s) 25
ArsI GACNNNNNNTTYG 2 cut(s) 233, 265
AspLEI GCGC 1 cut(s) 608
AspS9I GGNCC 3 cut(s) 398, 661, 671
AsuHPI GGTGA 6 cut(s) 767, 785, 825, 859, 920, 1070
AvaI CYCGRG 2 cut(s) 305, 712
AvaII GGWCC 2 cut(s) 398, 671
BaeI ACNNNNGTAYC 2 cut(s) 486, 519
BanI GGYRCC 1 cut(s) 70
BauI CACGAG 1 cut(s) 920
BbsI GAAGAC 2 cut(s) 45, 783
BbvI GCAGC 1 cut(s) 398
BccI CCATC 4 cut(s) 88, 350, 460, 992
BceAI ACGGC 6 cut(s) 137, 372, 420, 634, 728, 970
BcgI CGANNNNNNTGC 2 cut(s) 452, 486
BclI TGATCA 1 cut(s) 1180
BcoDI GTCTC 2 cut(s) 44, 962
BfaI CTAG 2 cut(s) 581, 707
BfoI RGCGCY 1 cut(s) 609
BisI GCNGC 1 cut(s) 387
BlsI GCNGC 1 cut(s) 388
Bme18I GGWCC 2 cut(s) 398, 671
BmeT110I CYCGRG 2 cut(s) 305, 712
BmgT120I GGNCC 3 cut(s) 398, 661, 671
BmiI GGNNCC 4 cut(s) 66, 72, 460, 635
BmsI GCATC 3 cut(s) 441, 707, 759
BpiI GAAGAC 2 cut(s) 45, 783
BpmI CTGGAG 1 cut(s) 495
Bsa29I ATCGAT 1 cut(s) 203
BsaAI YACGTR 1 cut(s) 382
BsaHI GRCGYC 3 cut(s) 191, 350, 741
BsaJI CCNNGG 3 cut(s) 109, 162, 667
BsaWI WCCGGW 5 cut(s) 67, 590, 887, 935, 1080
BsaXI ACNNNNNCTCC 2 cut(s) 525, 555
Bsc4I CCNNNNNNNGG 3 cut(s) 114, 770, 859
Bse118I RCCGGY 2 cut(s) 187, 499
Bse3DI GCAATG 1 cut(s) 1020
BseAI TCCGGA 1 cut(s) 935
BseCI ATCGAT 1 cut(s) 203
BseDI CCNNGG 3 cut(s) 109, 162, 667
BseGI GGATG 1 cut(s) 456
BseLI CCNNNNNNNGG 3 cut(s) 114, 770, 859
BseMI GCAATG 1 cut(s) 1020
BseMII CTCAG 1 cut(s) 671
BseRI GAGGAG 3 cut(s) 666, 1109, 1127
BseXI GCAGC 1 cut(s) 398
Bsh1236I CGCG 2 cut(s) 164, 434
BshFI GGCC 2 cut(s) 257, 662
BshNI GGYRCC 1 cut(s) 70
BshVI ATCGAT 1 cut(s) 203
BsiHKCI CYCGRG 2 cut(s) 305, 712
BsiSI CCGG 8 cut(s) 68, 74, 188, 500, 591, 888, 936, 1081
BslFI GGGAC 3 cut(s) 284, 502, 717
BslI CCNNNNNNNGG 3 cut(s) 114, 770, 859
BsmAI GTCTC 2 cut(s) 44, 962
BsmBI CGTCTC 1 cut(s) 44
BsmFI GGGAC 3 cut(s) 284, 502, 717
BsnI GGCC 2 cut(s) 257, 662
BsoBI CYCGRG 2 cut(s) 305, 712
Bsp13I TCCGGA 1 cut(s) 935
Bsp143I GATC 2 cut(s) 849, 1180
BspACI CCGC 8 cut(s) 115, 162, 164, 302, 393, 434, 688, 1057
BspANI GGCC 2 cut(s) 257, 662
BspCNI CTCAG 1 cut(s) 670
BspDI ATCGAT 1 cut(s) 203
BspEI TCCGGA 1 cut(s) 935
BspFNI CGCG 2 cut(s) 164, 434
BspHI TCATGA 1 cut(s) 138
BspLI GGNNCC 4 cut(s) 66, 72, 460, 635
BspPI GGATC 1 cut(s) 844
BspT107I GGYRCC 1 cut(s) 70
BsrBI CCGCTC 1 cut(s) 304
BsrDI GCAATG 1 cut(s) 1020
BsrFI RCCGGY 2 cut(s) 187, 499
BssAI RCCGGY 2 cut(s) 187, 499
BssECI CCNNGG 3 cut(s) 109, 162, 667
BssMI GATC 2 cut(s) 849, 1180
BssNI GRCGYC 3 cut(s) 191, 350, 741
BssSI CACGAG 1 cut(s) 920
BssT1I CCWWGG 1 cut(s) 109
Bst2BI CACGAG 1 cut(s) 920
Bst6I CTCTTC 1 cut(s) 934
BstACI GRCGYC 3 cut(s) 191, 350, 741
BstBAI YACGTR 1 cut(s) 382
BstC8I GCNNGC 3 cut(s) 132, 189, 391
BstDEI CTNAG 2 cut(s) 657, 736
BstDSI CCRYGG 2 cut(s) 162, 667
BstF5I GGATG 1 cut(s) 456
BstFNI CGCG 2 cut(s) 164, 434
BstH2I RGCGCY 1 cut(s) 609
BstHHI GCGC 1 cut(s) 608
BstKTI GATC 2 cut(s) 852, 1183
BstMAI GTCTC 2 cut(s) 44, 962
BstMBI GATC 2 cut(s) 849, 1180
BstMWI GCNNNNNNNGC 2 cut(s) 356, 413
BstNSI RCATGY 1 cut(s) 223
BstUI CGCG 2 cut(s) 164, 434
BstV1I GCAGC 1 cut(s) 398
BstV2I GAAGAC 2 cut(s) 45, 783
BstXI CCANNNNNNTGG 1 cut(s) 567
Bsu15I ATCGAT 1 cut(s) 203
BsuRI GGCC 2 cut(s) 257, 662
BsuTUI ATCGAT 1 cut(s) 203
BtgI CCRYGG 2 cut(s) 162, 667
BtsCI GGATG 1 cut(s) 456
BtsI GCAGTG 1 cut(s) 423
BtsIMutI CAGTG 1 cut(s) 423
Cac8I GCNNGC 3 cut(s) 132, 189, 391
CciI TCATGA 1 cut(s) 138
CfoI GCGC 1 cut(s) 608
Cfr10I RCCGGY 2 cut(s) 187, 499
Cfr13I GGNCC 3 cut(s) 398, 661, 671
Cfr42I CCGCGG 1 cut(s) 165
ClaI ATCGAT 1 cut(s) 203
CseI GACGC 4 cut(s) 180, 339, 749, 1019
Csp6I GTAC 3 cut(s) 379, 430, 495
CspCI CAANNNNNGTGG 4 cut(s) 98, 133, 1114, 1149
CviAII CATG 4 cut(s) 139, 220, 296, 1028
CviQI GTAC 3 cut(s) 379, 430, 495
DdeI CTNAG 2 cut(s) 657, 736
DpnI GATC 2 cut(s) 851, 1182
DpnII GATC 2 cut(s) 849, 1180
DrdI GACNNNNNNGTC 1 cut(s) 785
DseDI GACNNNNNNGTC 1 cut(s) 785
Eam1104I CTCTTC 1 cut(s) 934
EarI CTCTTC 1 cut(s) 934
EciI GGCGGA 1 cut(s) 677
Eco130I CCWWGG 1 cut(s) 109
Eco32I GATATC 1 cut(s) 1171
Eco47I GGWCC 2 cut(s) 398, 671
Eco47III AGCGCT 1 cut(s) 607
Eco57I CTGAAG 1 cut(s) 859
Eco88I CYCGRG 2 cut(s) 305, 712
EcoRV GATATC 1 cut(s) 1171
EcoT14I CCWWGG 1 cut(s) 109
EcoT22I ATGCAT 1 cut(s) 225
ErhI CCWWGG 1 cut(s) 109
Esp3I CGTCTC 1 cut(s) 44
FaeI CATG 4 cut(s) 142, 223, 299, 1031
FaqI GGGAC 3 cut(s) 284, 502, 717
FatI CATG 4 cut(s) 138, 219, 295, 1027
FauI CCCGC 1 cut(s) 309
FbaI TGATCA 1 cut(s) 1180
FblI GTMKAC 1 cut(s) 353
Fnu4HI GCNGC 1 cut(s) 387
FokI GGATG 1 cut(s) 463
Fsp4HI GCNGC 1 cut(s) 387
FspBI CTAG 2 cut(s) 581, 707
GlaI GCGC 1 cut(s) 607
GluI GCNGC 1 cut(s) 387
GsuI CTGGAG 1 cut(s) 495
HaeII RGCGCY 1 cut(s) 609
HaeIII GGCC 2 cut(s) 257, 662
HapII CCGG 8 cut(s) 68, 74, 188, 500, 591, 888, 936, 1081
HgaI GACGC 4 cut(s) 180, 339, 749, 1019
HhaI GCGC 1 cut(s) 608
Hin1I GRCGYC 3 cut(s) 191, 350, 741
Hin1II CATG 4 cut(s) 142, 223, 299, 1031
Hin6I GCGC 1 cut(s) 606
HinP1I GCGC 1 cut(s) 606
HincII GTYRAC 5 cut(s) 217, 354, 769, 1009, 1018
HindII GTYRAC 5 cut(s) 217, 354, 769, 1009, 1018
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 3 cut(s) 556, 927, 980
HpaI GTTAAC 1 cut(s) 769
HpaII CCGG 8 cut(s) 68, 74, 188, 500, 591, 888, 936, 1081
HphI GGTGA 6 cut(s) 767, 785, 825, 859, 920, 1070
Hpy166II GTNNAC 7 cut(s) 87, 217, 354, 758, 769, 1009, 1018
Hpy188I TCNGA 5 cut(s) 241, 463, 533, 811, 1168
Hpy188III TCNNGA 5 cut(s) 139, 321, 598, 922, 936
Hpy8I GTNNAC 7 cut(s) 87, 217, 354, 758, 769, 1009, 1018
Hpy99I CGWCG 5 cut(s) 355, 358, 956, 995, 1168
HpyAV CCTTC 3 cut(s) 136, 479, 663
HpyCH4IV ACGT 1 cut(s) 381
HpyCH4V TGCA 7 cut(s) 130, 223, 229, 373, 454, 720, 750
HpyF10VI GCNNNNNNNGC 2 cut(s) 356, 413
HpyF3I CTNAG 2 cut(s) 657, 736
HpySE526I ACGT 1 cut(s) 381
Hsp92I GRCGYC 3 cut(s) 191, 350, 741
Hsp92II CATG 4 cut(s) 142, 223, 299, 1031
HspAI GCGC 1 cut(s) 606
Kpn2I TCCGGA 1 cut(s) 935
KroI GCCGGC 1 cut(s) 187
KroNI GCCGGC 1 cut(s) 189
Ksp22I TGATCA 1 cut(s) 1180
KspAI GTTAAC 1 cut(s) 769
KspI CCGCGG 1 cut(s) 165
Kzo9I GATC 2 cut(s) 849, 1180
LmnI GCTCC 3 cut(s) 464, 577, 1067
Lsp1109I GCAGC 1 cut(s) 398
LweI GCATC 3 cut(s) 441, 707, 759
MaeI CTAG 2 cut(s) 581, 707
MaeII ACGT 1 cut(s) 381
MaeIII GTNAC 5 cut(s) 157, 614, 869, 908, 1042
MalI GATC 2 cut(s) 851, 1182
MbiI CCGCTC 1 cut(s) 304
MboI GATC 2 cut(s) 849, 1180
MboII GAAGA 5 cut(s) 50, 89, 788, 951, 1098
MluCI AATT 1 cut(s) 25
MlyI GAGTC 2 cut(s) 936, 989
MmeI TCCRAC 3 cut(s) 425, 511, 1146
Mph1103I ATGCAT 1 cut(s) 225
MreI CGCCGGCG 1 cut(s) 187
MroI TCCGGA 1 cut(s) 935
MroNI GCCGGC 1 cut(s) 187
MseI TTAA 3 cut(s) 768, 791, 1074
MslI CAYNNNNRTG 1 cut(s) 845
MspA1I CMGCKG 1 cut(s) 164
MspI CCGG 8 cut(s) 68, 74, 188, 500, 591, 888, 936, 1081
MvnI CGCG 2 cut(s) 164, 434
MwoI GCNNNNNNNGC 2 cut(s) 356, 413
NaeI GCCGGC 1 cut(s) 189
NdeII GATC 2 cut(s) 849, 1180
NgoMIV GCCGGC 1 cut(s) 187
NlaIII CATG 4 cut(s) 142, 223, 299, 1031
NlaIV GGNNCC 4 cut(s) 66, 72, 460, 635
NmuCI GTSAC 4 cut(s) 157, 614, 908, 1042
NsiI ATGCAT 1 cut(s) 225
NspI RCATGY 1 cut(s) 223
OliI CACNNNNGTG 1 cut(s) 845
PaeR7I CTCGAG 1 cut(s) 305
PagI TCATGA 1 cut(s) 138
PdiI GCCGGC 1 cut(s) 189
PfeI GAWTC 1 cut(s) 556
PflFI GACNNNGTC 1 cut(s) 1013
PkrI GCNGC 1 cut(s) 388
PleI GAGTC 2 cut(s) 935, 988
PpsI GAGTC 2 cut(s) 935, 988
Ppu21I YACGTR 1 cut(s) 382
PspN4I GGNNCC 4 cut(s) 66, 72, 460, 635
PspPI GGNCC 3 cut(s) 398, 661, 671
PspXI VCTCGAGB 1 cut(s) 305
PsyI GACNNNGTC 1 cut(s) 1013
RsaI GTAC 3 cut(s) 380, 431, 496
RsaNI GTAC 3 cut(s) 379, 430, 495
RseI CAYNNNNRTG 1 cut(s) 845
SacII CCGCGG 1 cut(s) 165
SalI GTCGAC 1 cut(s) 352
SaqAI TTAA 3 cut(s) 768, 791, 1074
SatI GCNGC 1 cut(s) 387
Sau3AI GATC 2 cut(s) 849, 1180
Sau96I GGNCC 3 cut(s) 398, 661, 671
SchI GAGTC 2 cut(s) 936, 989
SfaNI GCATC 3 cut(s) 441, 707, 759
Sfr274I CTCGAG 1 cut(s) 305
Sfr303I CCGCGG 1 cut(s) 165
SgrAI CRCCGGYG 2 cut(s) 187, 499
SgrBI CCGCGG 1 cut(s) 165
SgrDI CGTCGACG 1 cut(s) 352
SinI GGWCC 2 cut(s) 398, 671
SlaI CTCGAG 1 cut(s) 305
SmiMI CAYNNNNRTG 1 cut(s) 845
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
Sse9I AATT 1 cut(s) 25
SsiI CCGC 8 cut(s) 115, 162, 164, 302, 393, 434, 688, 1057
SspI AATATT 1 cut(s) 1129
SspMI CTAG 2 cut(s) 581, 707
StyI CCWWGG 1 cut(s) 109
TaiI ACGT 1 cut(s) 384
TaqI TCGA 7 cut(s) 203, 306, 345, 353, 525, 990, 1110
TasI AATT 1 cut(s) 25
TfiI GAWTC 1 cut(s) 556
Tru1I TTAA 3 cut(s) 768, 791, 1074
Tru9I TTAA 3 cut(s) 768, 791, 1074
TscAI CASTG 1 cut(s) 423
TseFI GTSAC 4 cut(s) 157, 614, 908, 1042
TseI GCWGC 1 cut(s) 386
Tsp45I GTSAC 4 cut(s) 157, 614, 908, 1042
TspDTI ATGAA 3 cut(s) 17, 155, 284
TspGWI ACGGA 1 cut(s) 857
TspRI CASTG 1 cut(s) 423
Tth111I GACNNNGTC 1 cut(s) 1013
VpaK11BI GGWCC 2 cut(s) 398, 671
XapI RAATTY 1 cut(s) 25
XceI RCATGY 1 cut(s) 223
XhoI CTCGAG 1 cut(s) 305
XmiI GTMKAC 1 cut(s) 353
XspI CTAG 2 cut(s) 581, 707
Zsp2I ATGCAT 1 cut(s) 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.