Rorug06G0299300

Protein of unknown function (DUF620)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0015873
Physical Location & Seq
Reverse (-)
45169818 .. 45171984
2167 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0299300.1

Sequence Viewer

Length: 606 bp
ATGGCGGGATCTGTTTTCACTTCTGCTTTGGAAGGAATGAAGCATGTTAAATCTGAAAATGGAGAGATGCTCACCAAGCATTTCTTGGATGTATGCAAACAGTTACTACCCGTTTTAGATAAGTTTGGAGCAGCACTTTCACCCGTCAAATCTGATGTTGCTAACAATATATCGAGGCTAGAAACCAAGTACTCTTCCAACCCATCAGAATTCAATCTATTGTACAGTCTAGTTCGGCCTGAGATTGAAGCCAAAACCGCTAAATCCTCATCCAGTTGCACAAATGCGCTACTCTGGCTAACTAGGGGTATGGACTACTTGGTGGAGCTGTTTCGAAATCTACATGATAATCCAGACTGGCCACTGTCAAAAGCTTGCACAGAAGCCTACAACAAGACATTGAAAAAATGGCATAATTGGATAGCTAGCTCTGGTTTTAGTGTTGGAATTAAGCTTGCTCCTGAGAGGAAGAAATTCATGGAGATAATAGGCGAAACGGCTGATTTGACTTCTGACATTCAGAAGTTCTGCACAAATTTCTCTCCACTTCTCGAAGAGAATCATAAGTTCCTTGACTCTGTGGGAATGGGCAATCTCAAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF620

Protein Analysis

201

Amino Acids

22.47

Weight (kDa)

7.67

Isoelectric Point (pI)

46.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLTP PF08718 24 - 164 4.5e-47 Glycolipid transfer protein (GLTP)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015873)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75160
fragaria_vesca FvH4_2g39940
malus_domestica MD08G1034000.v1.1 MD15G1030800.v1.1
prunus_persica Prupe.1G381000_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0300821
rosa_laevigata RLG00000011297
rosa_multiflora Rmu_co8409361.1_g000001 Rmu_sc0008947.1_g000004
rosa_roxburghii Rroxscaffold_7G00167380
rosa_rugosa Rorug06G0299300
rosa_samantha Rh6AG412400 Rh6BG419600 Rh6CG427100 Rh6DG412400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 258
AclWI GGATC 1 cut(s) 16
AcoI YGGCCR 1 cut(s) 359
AcsI RAATTY 3 cut(s) 209, 473, 535
AfaI GTAC 2 cut(s) 191, 224
AgsI TTSAA 3 cut(s) 214, 248, 403
AluBI AGCT 6 cut(s) 328, 374, 425, 429, 454, 602
AluI AGCT 6 cut(s) 328, 374, 425, 429, 454, 602
AlwI GGATC 1 cut(s) 16
AoxI GGCC 2 cut(s) 236, 359
ApeKI GCWGC 1 cut(s) 131
ApoI RAATTY 3 cut(s) 209, 473, 535
Asp700I GAANNNNTTC 1 cut(s) 473
AspLEI GCGC 1 cut(s) 289
AsuHPI GGTGA 2 cut(s) 64, 132
AsuII TTCGAA 1 cut(s) 334
AsuNHI GCTAGC 1 cut(s) 425
BalI TGGCCA 1 cut(s) 361
BbvI GCAGC 1 cut(s) 143
BccI CCATC 1 cut(s) 211
BceAI ACGGC 1 cut(s) 513
BfaI CTAG 4 cut(s) 179, 230, 303, 426
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
BmcAI AGTACT 1 cut(s) 191
BmsI GCATC 1 cut(s) 57
BmtI GCTAGC 1 cut(s) 429
BplI GAGNNNNNCTC 2 cut(s) 54, 86
Bpu14I TTCGAA 1 cut(s) 334
Bse1I ACTGG 2 cut(s) 273, 362
BseGI GGATG 2 cut(s) 94, 269
BseMII CTCAG 2 cut(s) 231, 453
BseNI ACTGG 2 cut(s) 273, 362
BseXI GCAGC 1 cut(s) 143
BsgI GTGCAG 1 cut(s) 514
BshFI GGCC 2 cut(s) 238, 361
BsnI GGCC 2 cut(s) 238, 361
Bsp119I TTCGAA 1 cut(s) 334
Bsp1407I TGTACA 1 cut(s) 222
Bsp143I GATC 1 cut(s) 8
BspACI CCGC 2 cut(s) 5, 258
BspANI GGCC 2 cut(s) 238, 361
BspCNI CTCAG 2 cut(s) 232, 454
BspOI GCTAGC 1 cut(s) 429
BspPI GGATC 1 cut(s) 16
BspT104I TTCGAA 1 cut(s) 334
BsrGI TGTACA 1 cut(s) 222
BsrI ACTGG 2 cut(s) 273, 362
BssMI GATC 1 cut(s) 8
Bst4CI ACNGT 3 cut(s) 102, 227, 366
Bst6I CTCTTC 2 cut(s) 199, 549
BstAUI TGTACA 1 cut(s) 222
BstBI TTCGAA 1 cut(s) 334
BstC8I GCNNGC 3 cut(s) 376, 427, 456
BstDEI CTNAG 2 cut(s) 240, 462
BstF5I GGATG 2 cut(s) 94, 269
BstHHI GCGC 1 cut(s) 289
BstKTI GATC 1 cut(s) 11
BstMBI GATC 1 cut(s) 8
BstMWI GCNNNNNNNGC 3 cut(s) 76, 257, 295
BstNSI RCATGY 1 cut(s) 47
BstV1I GCAGC 1 cut(s) 143
BstX2I RGATCY 1 cut(s) 8
BstYI RGATCY 1 cut(s) 8
BsuRI GGCC 2 cut(s) 238, 361
BtsCI GGATG 2 cut(s) 94, 269
BtsIMutI CAGTG 1 cut(s) 362
Cac8I GCNNGC 3 cut(s) 376, 427, 456
CfoI GCGC 1 cut(s) 289
Csp6I GTAC 2 cut(s) 190, 223
CviAII CATG 3 cut(s) 44, 344, 478
CviQI GTAC 2 cut(s) 190, 223
DdeI CTNAG 2 cut(s) 240, 462
DpnI GATC 1 cut(s) 10
DpnII GATC 1 cut(s) 8
EaeI YGGCCR 1 cut(s) 359
Eam1104I CTCTTC 2 cut(s) 199, 549
EarI CTCTTC 2 cut(s) 199, 549
EcoRI GAATTC 1 cut(s) 209
FaeI CATG 3 cut(s) 47, 347, 481
FaiI YATR 8 cut(s) 45, 94, 170, 311, 345, 414, 479, 564
FalI AAGNNNNNCTT 2 cut(s) 68, 100
FatI CATG 3 cut(s) 43, 343, 477
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 2 cut(s) 101, 256
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 4 cut(s) 179, 230, 303, 426
GlaI GCGC 1 cut(s) 288
GluI GCNGC 1 cut(s) 132
HaeIII GGCC 2 cut(s) 238, 361
HhaI GCGC 1 cut(s) 289
Hin1II CATG 3 cut(s) 47, 347, 481
Hin6I GCGC 1 cut(s) 287
HinP1I GCGC 1 cut(s) 287
HindIII AAGCTT 3 cut(s) 372, 452, 600
HinfI GANTC 2 cut(s) 559, 575
HphI GGTGA 2 cut(s) 64, 132
Hpy188I TCNGA 5 cut(s) 55, 154, 208, 514, 522
Hpy188III TCNNGA 3 cut(s) 353, 461, 551
HpyAV CCTTC 1 cut(s) 26
HpyCH4III ACNGT 3 cut(s) 102, 227, 366
HpyCH4V TGCA 4 cut(s) 96, 279, 378, 531
HpyF10VI GCNNNNNNNGC 3 cut(s) 76, 257, 295
HpyF3I CTNAG 2 cut(s) 240, 462
Hsp92II CATG 3 cut(s) 47, 347, 481
HspAI GCGC 1 cut(s) 287
Kzo9I GATC 1 cut(s) 8
LmnI GCTCC 3 cut(s) 128, 325, 463
LpnPI CCDG 7 cut(s) 252, 280, 286, 343, 366, 417, 474
Lsp1109I GCAGC 1 cut(s) 143
LweI GCATC 1 cut(s) 57
MaeI CTAG 4 cut(s) 179, 230, 303, 426
MaeIII GTNAC 1 cut(s) 102
MalI GATC 1 cut(s) 10
MboI GATC 1 cut(s) 8
MboII GAAGA 3 cut(s) 186, 481, 566
MflI RGATCY 1 cut(s) 8
MlsI TGGCCA 1 cut(s) 361
MluCI AATT 5 cut(s) 209, 415, 447, 473, 535
MluNI TGGCCA 1 cut(s) 361
MlyI GAGTC 1 cut(s) 569
MmeI TCCRAC 2 cut(s) 222, 424
MnlI CCTC 3 cut(s) 168, 277, 459
Mox20I TGGCCA 1 cut(s) 361
MroXI GAANNNNTTC 1 cut(s) 473
MscI TGGCCA 1 cut(s) 361
MseI TTAA 2 cut(s) 48, 450
Msp20I TGGCCA 1 cut(s) 361
MwoI GCNNNNNNNGC 3 cut(s) 76, 257, 295
NdeII GATC 1 cut(s) 8
NheI GCTAGC 1 cut(s) 425
NlaIII CATG 3 cut(s) 47, 347, 481
NspI RCATGY 1 cut(s) 47
NspV TTCGAA 1 cut(s) 334
PdmI GAANNNNTTC 1 cut(s) 473
PfeI GAWTC 1 cut(s) 559
PkrI GCNGC 1 cut(s) 133
PleI GAGTC 1 cut(s) 569
PpsI GAGTC 1 cut(s) 569
PsuI RGATCY 1 cut(s) 8
RsaI GTAC 2 cut(s) 191, 224
RsaNI GTAC 2 cut(s) 190, 223
SaqAI TTAA 2 cut(s) 48, 450
SatI GCNGC 1 cut(s) 132
Sau3AI GATC 1 cut(s) 8
ScaI AGTACT 1 cut(s) 191
SchI GAGTC 1 cut(s) 569
SetI ASST 6 cut(s) 330, 376, 427, 431, 456, 604
SfaNI GCATC 1 cut(s) 57
SfuI TTCGAA 1 cut(s) 334
Sse9I AATT 5 cut(s) 209, 415, 447, 473, 535
SsiI CCGC 2 cut(s) 5, 258
SspMI CTAG 4 cut(s) 179, 230, 303, 426
TaaI ACNGT 3 cut(s) 102, 227, 366
TaqI TCGA 3 cut(s) 173, 334, 552
TasI AATT 5 cut(s) 209, 415, 447, 473, 535
TatI WGTACW 2 cut(s) 189, 222
TfiI GAWTC 1 cut(s) 559
Tru1I TTAA 2 cut(s) 48, 450
Tru9I TTAA 2 cut(s) 48, 450
TscAI CASTG 1 cut(s) 369
TseI GCWGC 1 cut(s) 131
TspDTI ATGAA 2 cut(s) 53, 466
TspRI CASTG 1 cut(s) 369
XapI RAATTY 3 cut(s) 209, 473, 535
XceI RCATGY 1 cut(s) 47
XcmI CCANNNNNNNNNTGG 1 cut(s) 82
XmnI GAANNNNTTC 1 cut(s) 473
XspI CTAG 4 cut(s) 179, 230, 303, 426
ZrmI AGTACT 1 cut(s) 191
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.