Rroxscaffold_7G00167380

Protein of unknown function (DUF620)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0015873
Physical Location & Seq
Reverse (-)
8524017 .. 8524774
758 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_7G00167380.1

Sequence Viewer

Length: 672 bp
ATGAGGAAGTTGTGCCCTAACCTTGACAATGAAGATGGCCTTGAAACCGTTCTTGAGGTGCCGATACCGGAAGAAATGTTCACCCTTATGGGCAGCAGTGCTATATTGCGTTGGCATAATTTGCGAACATTCATGAAAAATCAATCCCATGGGAAATACTCCACTTCTCATCTCCCGTCAGGATCAAATAGTGAGTTTATGGCATTGCTTAAGCTTGTGGGTTCTCCTCTAATCCCTCTTCAGGTTCATTGCGACTGTGCCCTCACTCGCCCAATCAAAGATTGTTCCATCGAGGCTTCTACTGCGAAATACATTGTACAACAATATGTAGCAGCTATCGGGGGACTAGCGGCATTGAATGCCGTGAATAGTATGTGTGCAGTAGGGCAGGTGAAGATGGTGGGATCTGAAATGCACAAAGCCGATGATAACAGTGTTCAAACGACGACGAAAGTCAACAGTGAAGTTGGTGGATTTGTTCTTTGGCAAAAGAATCCTGACTTGTGGTACTTAGAGCTGGTTGTTTCCGGCTACAAGGTAAGTGCCGGAAGCGATGGCGCTGTTGCATGGAATCAGTCCGGTTCTCAACCTTCTCATGCCAATAAAGGCCCCCCAAGACCCCTCCGTCGCTTCTTTCAGGTGAATACTTACTCGGCACTAGCATACATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF620

Protein Analysis

223

Amino Acids

24.36

Weight (kDa)

7.66

Isoelectric Point (pI)

49.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF620 PF04788 125 - 214 1e-34 Protein of unknown function (DUF620)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015873)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75160
fragaria_vesca FvH4_2g39940
malus_domestica MD08G1034000.v1.1 MD15G1030800.v1.1
prunus_persica Prupe.1G381000_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0300821
rosa_laevigata RLG00000011297
rosa_multiflora Rmu_co8409361.1_g000001 Rmu_sc0008947.1_g000004
rosa_roxburghii Rroxscaffold_7G00167380
rosa_rugosa Rorug06G0299300
rosa_samantha Rh6AG412400 Rh6BG419600 Rh6CG427100 Rh6DG412400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 379
AasI GACNNNNNNGTC 1 cut(s) 624
Acc36I ACCTGC 1 cut(s) 379
AccB1I GGYRCC 1 cut(s) 58
AciI CCGC 1 cut(s) 350
AclWI GGATC 2 cut(s) 190, 412
AcuI CTGAAG 1 cut(s) 224
AfaI GTAC 2 cut(s) 318, 509
AfiI CCNNNNNNNGG 1 cut(s) 241
AflII CTTAAG 1 cut(s) 209
AflIII ACRYGT 1 cut(s) 666
AgsI TTSAA 3 cut(s) 44, 358, 440
AloI GAACNNNNNNTCC 2 cut(s) 62, 94
AluBI AGCT 3 cut(s) 214, 335, 517
AluI AGCT 3 cut(s) 214, 335, 517
AlwI GGATC 2 cut(s) 190, 412
AoxI GGCC 2 cut(s) 37, 607
ApeKI GCWGC 2 cut(s) 93, 332
Asp700I GAANNNNTTC 1 cut(s) 48
AspLEI GCGC 1 cut(s) 560
AspS9I GGNCC 1 cut(s) 608
AsuHPI GGTGA 3 cut(s) 73, 403, 652
BaeGI GKGCMC 2 cut(s) 17, 262
BanI GGYRCC 1 cut(s) 58
BbvI GCAGC 2 cut(s) 105, 344
BccI CCATC 4 cut(s) 29, 296, 391, 548
BceAI ACGGC 1 cut(s) 347
BfaI CTAG 2 cut(s) 347, 659
BfoI RGCGCY 1 cut(s) 561
BfrI CTTAAG 1 cut(s) 209
BfuAI ACCTGC 1 cut(s) 379
BisI GCNGC 3 cut(s) 94, 333, 351
BlsI GCNGC 3 cut(s) 95, 334, 352
BmgT120I GGNCC 1 cut(s) 608
BmiI GGNNCC 2 cut(s) 60, 610
BoxI GACNNNNGTC 1 cut(s) 452
BpuEI CTTGAG 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 148
BsaWI WCCGGW 2 cut(s) 67, 578
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse3DI GCAATG 2 cut(s) 203, 247
BseDI CCNNGG 1 cut(s) 148
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMI GCAATG 2 cut(s) 203, 247
BseRI GAGGAG 1 cut(s) 216
BseSI GKGCMC 2 cut(s) 17, 262
BseXI GCAGC 2 cut(s) 105, 344
BsgI GTGCAG 1 cut(s) 399
BshFI GGCC 2 cut(s) 39, 609
BshNI GGYRCC 1 cut(s) 58
BsiSI CCGG 4 cut(s) 68, 528, 546, 579
BslFI GGGAC 1 cut(s) 357
BslI CCNNNNNNNGG 1 cut(s) 241
BsmFI GGGAC 1 cut(s) 357
BsmI GAATGC 1 cut(s) 364
BsnI GGCC 2 cut(s) 39, 609
Bsp1286I GDGCHC 2 cut(s) 17, 262
Bsp1407I TGTACA 1 cut(s) 316
Bsp143I GATC 2 cut(s) 182, 404
Bsp19I CCATGG 1 cut(s) 148
BspACI CCGC 1 cut(s) 350
BspANI GGCC 2 cut(s) 39, 609
BspHI TCATGA 1 cut(s) 132
BspLI GGNNCC 2 cut(s) 60, 610
BspMI ACCTGC 1 cut(s) 379
BspPI GGATC 2 cut(s) 190, 412
BspT107I GGYRCC 1 cut(s) 58
BspTI CTTAAG 1 cut(s) 209
BsrDI GCAATG 2 cut(s) 203, 247
BsrGI TGTACA 1 cut(s) 316
BssECI CCNNGG 1 cut(s) 148
BssMI GATC 2 cut(s) 182, 404
BssT1I CCWWGG 1 cut(s) 148
Bst4CI ACNGT 4 cut(s) 49, 257, 434, 461
Bst6I CTCTTC 1 cut(s) 243
BstAFI CTTAAG 1 cut(s) 209
BstAPI GCANNNNNTGC 2 cut(s) 121, 359
BstAUI TGTACA 1 cut(s) 316
BstDEI CTNAG 1 cut(s) 511
BstDSI CCRYGG 1 cut(s) 148
BstH2I RGCGCY 1 cut(s) 561
BstHHI GCGC 1 cut(s) 560
BstKTI GATC 2 cut(s) 185, 407
BstMBI GATC 2 cut(s) 182, 404
BstMWI GCNNNNNNNGC 3 cut(s) 121, 302, 359
BstNSI RCATGY 1 cut(s) 670
BstPAI GACNNNNGTC 1 cut(s) 452
BstSLI GKGCMC 2 cut(s) 17, 262
BstV1I GCAGC 2 cut(s) 105, 344
BstX2I RGATCY 1 cut(s) 404
BstYI RGATCY 1 cut(s) 404
BsuRI GGCC 2 cut(s) 39, 609
BtgI CCRYGG 1 cut(s) 148
BtgZI GCGATG 1 cut(s) 567
BtsI GCAGTG 1 cut(s) 103
BtsIMutI CAGTG 3 cut(s) 103, 439, 466
BveI ACCTGC 1 cut(s) 379
CciI TCATGA 1 cut(s) 132
CfoI GCGC 1 cut(s) 560
Cfr13I GGNCC 1 cut(s) 608
Csp6I GTAC 2 cut(s) 317, 508
CviAII CATG 5 cut(s) 133, 149, 567, 596, 667
CviJI RGCY 8 cut(s) 39, 214, 296, 335, 422, 517, 531, 609
CviKI_1 RGCY 8 cut(s) 39, 214, 296, 335, 422, 517, 531, 609
CviQI GTAC 2 cut(s) 317, 508
DdeI CTNAG 1 cut(s) 511
DpnI GATC 2 cut(s) 184, 406
DpnII GATC 2 cut(s) 182, 404
DrdI GACNNNNNNGTC 1 cut(s) 624
DseDI GACNNNNNNGTC 1 cut(s) 624
Eam1104I CTCTTC 1 cut(s) 243
EarI CTCTTC 1 cut(s) 243
Eco130I CCWWGG 1 cut(s) 148
Eco57I CTGAAG 1 cut(s) 224
EcoO109I RGGNCCY 1 cut(s) 608
EcoT14I CCWWGG 1 cut(s) 148
ErhI CCWWGG 1 cut(s) 148
FaeI CATG 5 cut(s) 136, 152, 570, 599, 670
FalI AAGNNNNNCTT 2 cut(s) 24, 56
FaqI GGGAC 1 cut(s) 357
FatI CATG 5 cut(s) 132, 148, 566, 595, 666
Fnu4HI GCNGC 3 cut(s) 94, 333, 351
Fsp4HI GCNGC 3 cut(s) 94, 333, 351
FspBI CTAG 2 cut(s) 347, 659
GlaI GCGC 1 cut(s) 559
GluI GCNGC 3 cut(s) 94, 333, 351
HaeII RGCGCY 1 cut(s) 561
HaeIII GGCC 2 cut(s) 39, 609
HapII CCGG 4 cut(s) 68, 528, 546, 579
HhaI GCGC 1 cut(s) 560
Hin1II CATG 5 cut(s) 136, 152, 570, 599, 670
Hin6I GCGC 1 cut(s) 558
HinP1I GCGC 1 cut(s) 558
HincII GTYRAC 1 cut(s) 457
HindII GTYRAC 1 cut(s) 457
HindIII AAGCTT 1 cut(s) 212
HinfI GANTC 2 cut(s) 493, 571
HpaII CCGG 4 cut(s) 68, 528, 546, 579
HphI GGTGA 3 cut(s) 73, 403, 652
Hpy166II GTNNAC 2 cut(s) 81, 457
Hpy188I TCNGA 1 cut(s) 409
Hpy188III TCNNGA 4 cut(s) 53, 133, 180, 497
Hpy8I GTNNAC 2 cut(s) 81, 457
Hpy99I CGWCG 3 cut(s) 448, 451, 630
HpyAV CCTTC 1 cut(s) 600
HpyCH4III ACNGT 4 cut(s) 49, 257, 434, 461
HpyCH4V TGCA 3 cut(s) 380, 415, 566
HpyF10VI GCNNNNNNNGC 3 cut(s) 121, 302, 359
HpyF3I CTNAG 1 cut(s) 511
Hsp92II CATG 5 cut(s) 136, 152, 570, 599, 670
HspAI GCGC 1 cut(s) 558
Kzo9I GATC 2 cut(s) 182, 404
Lsp1109I GCAGC 2 cut(s) 105, 344
MaeI CTAG 2 cut(s) 347, 659
MalI GATC 2 cut(s) 184, 406
MboI GATC 2 cut(s) 182, 404
MboII GAAGA 4 cut(s) 44, 83, 230, 406
MflI RGATCY 1 cut(s) 404
MhlI GDGCHC 2 cut(s) 17, 262
MluCI AATT 1 cut(s) 118
MnlI CCTC 6 cut(s) 49, 237, 246, 272, 286, 632
MroXI GAANNNNTTC 1 cut(s) 48
MseI TTAA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 86
MspCI CTTAAG 1 cut(s) 209
MspI CCGG 4 cut(s) 68, 528, 546, 579
Mva1269I GAATGC 1 cut(s) 364
MwoI GCNNNNNNNGC 3 cut(s) 121, 302, 359
NcoI CCATGG 1 cut(s) 148
NdeII GATC 2 cut(s) 182, 404
NlaIII CATG 5 cut(s) 136, 152, 570, 599, 670
NlaIV GGNNCC 2 cut(s) 60, 610
NmeAIII GCCGAG 1 cut(s) 632
NspI RCATGY 1 cut(s) 670
PagI TCATGA 1 cut(s) 132
PaqCI CACCTGC 1 cut(s) 379
PciI ACATGT 1 cut(s) 666
PctI GAATGC 1 cut(s) 364
PdmI GAANNNNTTC 1 cut(s) 48
PfeI GAWTC 2 cut(s) 493, 571
PkrI GCNGC 3 cut(s) 95, 334, 352
PscI ACATGT 1 cut(s) 666
PshAI GACNNNNGTC 1 cut(s) 452
PspN4I GGNNCC 2 cut(s) 60, 610
PspPI GGNCC 1 cut(s) 608
PsuI RGATCY 1 cut(s) 404
RsaI GTAC 2 cut(s) 318, 509
RsaNI GTAC 2 cut(s) 317, 508
RseI CAYNNNNRTG 1 cut(s) 86
SaqAI TTAA 1 cut(s) 210
SatI GCNGC 3 cut(s) 94, 333, 351
Sau3AI GATC 2 cut(s) 182, 404
Sau96I GGNCC 1 cut(s) 608
SduI GDGCHC 2 cut(s) 17, 262
SmiMI CAYNNNNRTG 1 cut(s) 86
SmlI CTYRAG 2 cut(s) 53, 209
SmoI CTYRAG 2 cut(s) 53, 209
Sse9I AATT 1 cut(s) 118
SsiI CCGC 1 cut(s) 350
SspMI CTAG 2 cut(s) 347, 659
StyI CCWWGG 1 cut(s) 148
TaaI ACNGT 4 cut(s) 49, 257, 434, 461
TaqI TCGA 1 cut(s) 291
TasI AATT 1 cut(s) 118
TatI WGTACW 1 cut(s) 316
TauI GCSGC 1 cut(s) 353
TfiI GAWTC 2 cut(s) 493, 571
Tru1I TTAA 1 cut(s) 210
Tru9I TTAA 1 cut(s) 210
TscAI CASTG 3 cut(s) 103, 439, 466
TseI GCWGC 2 cut(s) 93, 332
TspDTI ATGAA 4 cut(s) 45, 121, 149, 236
TspGWI ACGGA 1 cut(s) 614
TspRI CASTG 3 cut(s) 103, 439, 466
Vha464I CTTAAG 1 cut(s) 209
XceI RCATGY 1 cut(s) 670
XmnI GAANNNNTTC 1 cut(s) 48
XspI CTAG 2 cut(s) 347, 659
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.