Prupe.1G381000_v2.0.a1

Protein of unknown function (DUF620)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0015873
Physical Location & Seq
Reverse (-)
34337135 .. 34338862
1728 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G381000.1

Sequence Viewer

Length: 1134 bp
ATGAGGAAGCTGTGCCCTAACCTTGACAAAGAAGATGGCCTCGACACCGTCCTTGAGGTGCCAATTCCTGAGGAAATGTTCAACAGCATGGGCAGCAACGCCATGTTGCGTTGGGCAAACCTACGCTCTTTCATGAAAGCTCAGTCCCACGTCGACAGGTCTTCAAATGGTAAATCCCATTTCTCATCACGATCGAACAATGAGTTCATGGCCTTGCTTAAGCTTGTGGGCTCTCCTCTCATCCCCCTCCAGGTTCACTGCGACAATGCCCTCACCCGCCCCATTAAAGATTGTTCCATTGAGGCTTCTACGGCAAAATATATAGTGCAGCAATATGTAGCGGCGACTGGGGGACTGGCGGTATTGAACTCGGTGAAGAGTATGTACGCCGTGGGCGAGATGAAGATGGTGGGATCGGAAATGCGTCAAGGTGATGACTCTGTGCATGTGCCAACCAAAGGCAATAGTGAGGTTGGAGGGTTTGTTCTATGGCAAAAGAATCCCGACTTGTGGTACTTGGAATTGGTTGTTTCCGGCTTCAAGGTCAGCGCCGGAAGCGACGGCAAGGTTGCATGGAACCAATCCGGCTCTCAACCTTGCCATGCCAATAAAGGCCCCCCAAGACCCCTCCGTCGCTTCTTTCAGGGATTGGACCCTCGGAGCATAGCAAATCTGTTCCTAGACGCAGTATGCATAGGGGAGAAAACCATTAACAAAGAGGAATCTTTCATACTCAAGCTTGAGACCCCCACAGAGATCCTACAATCCCAAAGCACACCCCAGACGGAAATTGTTCACCACACAATATGGGGCTACTTCAGCCAACGGACGGGGCTGCTCATCCAATTCGACGACACCAAGTTGGTCAAGATGAAGTCAAGATACGACAATGTGTTTTGGGAAACGACGATGGAGACGGTGATCGGAGACTATAGATACGTGGACGGGATCAACATAGCACACGGCGGCAAGACGTCTGCCTTGCTGTACAGGTACGGGCATGCATTTAACCAGAAGAGAAGGATTGAGGAGACGTGGAAGATTGAAGAGGTTGATTTCAATATTTGTGGGTTGTCCATGGAGTGCTTTCTGCCTCCTGCAGATCTTAAGAGAGAAGACGGTGGAGATCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF620

Protein Analysis

378

Amino Acids

42.3

Weight (kDa)

6.33

Isoelectric Point (pI)

50.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015873)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75160
fragaria_vesca FvH4_2g39940
malus_domestica MD08G1034000.v1.1 MD15G1030800.v1.1
prunus_persica Prupe.1G381000_v2.0.a1
rosa_chinensis RchiOBHm_Chr6g0300821
rosa_laevigata RLG00000011297
rosa_multiflora Rmu_co8409361.1_g000001 Rmu_sc0008947.1_g000004
rosa_roxburghii Rroxscaffold_7G00167380
rosa_rugosa Rorug06G0299300
rosa_samantha Rh6AG412400 Rh6BG419600 Rh6CG427100 Rh6DG412400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 630
AatII GACGTC 1 cut(s) 977
AccB1I GGYRCC 1 cut(s) 58
AccI GTMKAC 1 cut(s) 153
AciI CCGC 4 cut(s) 277, 341, 359, 966
AclWI GGATC 3 cut(s) 421, 751, 956
AcuI CTGAAG 1 cut(s) 802
AcyI GRCGYC 1 cut(s) 974
AfaI GTAC 4 cut(s) 386, 515, 989, 995
AfiI CCNNNNNNNGG 4 cut(s) 250, 458, 510, 829
AflII CTTAAG 2 cut(s) 218, 1106
AgsI TTSAA 6 cut(s) 82, 165, 367, 541, 1046, 1060
AjiI CACGTC 2 cut(s) 151, 1035
AjnI CCWGG 1 cut(s) 249
AloI GAACNNNNNNTCC 2 cut(s) 468, 500
AluBI AGCT 4 cut(s) 10, 140, 223, 739
AluI AGCT 4 cut(s) 10, 140, 223, 739
Alw26I GTCTC 4 cut(s) 737, 908, 921, 1025
AlwI GGATC 3 cut(s) 421, 751, 956
AoxI GGCC 3 cut(s) 37, 210, 613
ApeKI GCWGC 3 cut(s) 93, 328, 835
Asp700I GAANNNNTTC 1 cut(s) 792
AspLEI GCGC 1 cut(s) 551
AspS9I GGNCC 2 cut(s) 614, 652
AsuHPI GGTGA 5 cut(s) 265, 385, 443, 788, 931
AvaII GGWCC 1 cut(s) 652
AxyI CCTNAGG 1 cut(s) 69
BaeGI GKGCMC 1 cut(s) 17
BanI GGYRCC 1 cut(s) 58
BanII GRGCYC 1 cut(s) 233
BarI GAAGNNNNNNTAC 4 cut(s) 368, 400, 866, 898
BbsI GAAGAC 2 cut(s) 153, 1122
BbvI GCAGC 3 cut(s) 105, 340, 822
BccI CCATC 3 cut(s) 29, 400, 904
BceAI ACGGC 4 cut(s) 327, 374, 577, 979
BciT130I CCWGG 1 cut(s) 251
BcoDI GTCTC 4 cut(s) 737, 908, 921, 1025
BfaI CTAG 1 cut(s) 680
BfmI CTRYAG 2 cut(s) 931, 1098
BfoI RGCGCY 1 cut(s) 552
BfrI CTTAAG 2 cut(s) 218, 1106
BglII AGATCT 1 cut(s) 1102
BisI GCNGC 5 cut(s) 94, 329, 342, 836, 967
BlsI GCNGC 5 cut(s) 95, 330, 343, 837, 968
Bme1390I CCNGG 1 cut(s) 251
Bme18I GGWCC 1 cut(s) 652
BmgBI CACGTC 2 cut(s) 151, 1035
BmgT120I GGNCC 2 cut(s) 614, 652
BmiI GGNNCC 4 cut(s) 60, 578, 616, 654
BmrFI CCNGG 1 cut(s) 251
BmrI ACTGGG 1 cut(s) 357
BmuI ACTGGG 1 cut(s) 357
BpiI GAAGAC 2 cut(s) 153, 1122
BpmI CTGGAG 1 cut(s) 233
BpuEI CTTGAG 3 cut(s) 74, 719, 761
BsaAI YACGTR 1 cut(s) 940
BsaHI GRCGYC 1 cut(s) 974
BsaI GGTCTC 1 cut(s) 737
BsaJI CCNNGG 3 cut(s) 390, 656, 1077
BsaXI ACNNNNNCTCC 2 cut(s) 468, 498
Bsc4I CCNNNNNNNGG 4 cut(s) 250, 458, 510, 829
Bse1I ACTGG 2 cut(s) 352, 360
Bse21I CCTNAGG 1 cut(s) 69
BseBI CCWGG 1 cut(s) 251
BseDI CCNNGG 3 cut(s) 390, 656, 1077
BseGI GGATG 2 cut(s) 240, 840
BseLI CCNNNNNNNGG 4 cut(s) 250, 458, 510, 829
BseMII CTCAG 2 cut(s) 60, 155
BseNI ACTGG 2 cut(s) 352, 360
BseRI GAGGAG 2 cut(s) 225, 1043
BseSI GKGCMC 1 cut(s) 17
BseXI GCAGC 3 cut(s) 105, 340, 822
BsgI GTGCAG 1 cut(s) 347
Bsh1285I CGRYCG 1 cut(s) 194
BshFI GGCC 3 cut(s) 39, 212, 615
BshNI GGYRCC 1 cut(s) 58
BsiEI CGRYCG 1 cut(s) 194
BsiSI CCGG 3 cut(s) 534, 552, 585
BslFI GGGAC 2 cut(s) 130, 366
BslI CCNNNNNNNGG 4 cut(s) 250, 458, 510, 829
BsmAI GTCTC 4 cut(s) 737, 908, 921, 1025
BsmBI CGTCTC 2 cut(s) 908, 1025
BsmFI GGGAC 2 cut(s) 130, 366
BsnI GGCC 3 cut(s) 39, 212, 615
Bso31I GGTCTC 1 cut(s) 737
Bsp1286I GDGCHC 2 cut(s) 17, 233
Bsp1407I TGTACA 1 cut(s) 987
Bsp143I GATC 7 cut(s) 191, 413, 756, 921, 948, 1102, 1126
Bsp19I CCATGG 1 cut(s) 1077
BspACI CCGC 4 cut(s) 277, 341, 359, 966
BspANI GGCC 3 cut(s) 39, 212, 615
BspCNI CTCAG 2 cut(s) 61, 154
BspHI TCATGA 1 cut(s) 132
BspLI GGNNCC 4 cut(s) 60, 578, 616, 654
BspMAI CTGCAG 1 cut(s) 1102
BspPI GGATC 3 cut(s) 421, 751, 956
BspT107I GGYRCC 1 cut(s) 58
BspTI CTTAAG 2 cut(s) 218, 1106
BspTNI GGTCTC 1 cut(s) 737
BsrGI TGTACA 1 cut(s) 987
BsrI ACTGG 2 cut(s) 352, 360
BssECI CCNNGG 3 cut(s) 390, 656, 1077
BssMI GATC 7 cut(s) 191, 413, 756, 921, 948, 1102, 1126
BssNI GRCGYC 1 cut(s) 974
BssT1I CCWWGG 1 cut(s) 1077
Bst2UI CCWGG 1 cut(s) 251
Bst4CI ACNGT 3 cut(s) 49, 919, 1121
Bst6I CTCTTC 3 cut(s) 371, 1010, 1041
BstACI GRCGYC 1 cut(s) 974
BstAFI CTTAAG 2 cut(s) 218, 1106
BstAUI TGTACA 1 cut(s) 987
BstBAI YACGTR 1 cut(s) 940
BstC8I GCNNGC 1 cut(s) 1002
BstDEI CTNAG 2 cut(s) 69, 141
BstDSI CCRYGG 2 cut(s) 390, 1077
BstF5I GGATG 2 cut(s) 240, 840
BstH2I RGCGCY 1 cut(s) 552
BstHHI GCGC 1 cut(s) 551
BstKTI GATC 7 cut(s) 194, 416, 759, 924, 951, 1105, 1129
BstMAI GTCTC 4 cut(s) 737, 908, 921, 1025
BstMBI GATC 7 cut(s) 191, 413, 756, 921, 948, 1102, 1126
BstMCI CGRYCG 1 cut(s) 194
BstMWI GCNNNNNNNGC 4 cut(s) 93, 311, 555, 819
BstNI CCWGG 1 cut(s) 251
BstNSI RCATGY 2 cut(s) 449, 1004
BstSCI CCNGG 1 cut(s) 249
BstSFI CTRYAG 2 cut(s) 931, 1098
BstSLI GKGCMC 1 cut(s) 17
BstV1I GCAGC 3 cut(s) 105, 340, 822
BstV2I GAAGAC 2 cut(s) 153, 1122
BstX2I RGATCY 2 cut(s) 756, 1102
BstYI RGATCY 2 cut(s) 756, 1102
Bsu36I CCTNAGG 1 cut(s) 69
BsuRI GGCC 3 cut(s) 39, 212, 615
BtgI CCRYGG 2 cut(s) 390, 1077
BtrI CACGTC 2 cut(s) 151, 1035
BtsCI GGATG 2 cut(s) 240, 840
BtsI GCAGTG 1 cut(s) 256
BtsIMutI CAGTG 1 cut(s) 256
Cac8I GCNNGC 1 cut(s) 1002
CciI TCATGA 1 cut(s) 132
CfoI GCGC 1 cut(s) 551
Cfr13I GGNCC 2 cut(s) 614, 652
CseI GACGC 2 cut(s) 413, 692
Csp6I GTAC 4 cut(s) 385, 514, 988, 994
CspCI CAANNNNNGTGG 2 cut(s) 1048, 1083
CviAII CATG 9 cut(s) 88, 103, 133, 208, 446, 573, 602, 1001, 1078
CviQI GTAC 4 cut(s) 385, 514, 988, 994
DdeI CTNAG 2 cut(s) 69, 141
DpnI GATC 7 cut(s) 193, 415, 758, 923, 950, 1104, 1128
DpnII GATC 7 cut(s) 191, 413, 756, 921, 948, 1102, 1126
DrdI GACNNNNNNGTC 1 cut(s) 630
DseDI GACNNNNNNGTC 1 cut(s) 630
Eam1104I CTCTTC 3 cut(s) 371, 1010, 1041
EarI CTCTTC 3 cut(s) 371, 1010, 1041
Eco130I CCWWGG 1 cut(s) 1077
Eco24I GRGCYC 1 cut(s) 233
Eco31I GGTCTC 1 cut(s) 737
Eco47I GGWCC 1 cut(s) 652
Eco57I CTGAAG 1 cut(s) 802
Eco81I CCTNAGG 1 cut(s) 69
EcoO109I RGGNCCY 1 cut(s) 614
EcoRII CCWGG 1 cut(s) 249
EcoT14I CCWWGG 1 cut(s) 1077
EcoT22I ATGCAT 2 cut(s) 695, 1006
EcoT38I GRGCYC 1 cut(s) 233
ErhI CCWWGG 1 cut(s) 1077
Esp3I CGTCTC 2 cut(s) 908, 1025
FaeI CATG 9 cut(s) 91, 106, 136, 211, 449, 576, 605, 1004, 1081
FaqI GGGAC 2 cut(s) 130, 366
FatI CATG 9 cut(s) 87, 102, 132, 207, 445, 572, 601, 1000, 1077
FauI CCCGC 1 cut(s) 284
FblI GTMKAC 1 cut(s) 153
Fnu4HI GCNGC 5 cut(s) 94, 329, 342, 836, 967
FokI GGATG 2 cut(s) 227, 827
FriOI GRGCYC 1 cut(s) 233
Fsp4HI GCNGC 5 cut(s) 94, 329, 342, 836, 967
FspBI CTAG 1 cut(s) 680
GlaI GCGC 1 cut(s) 550
GluI GCNGC 5 cut(s) 94, 329, 342, 836, 967
GsuI CTGGAG 1 cut(s) 233
HaeII RGCGCY 1 cut(s) 552
HaeIII GGCC 3 cut(s) 39, 212, 615
HapII CCGG 3 cut(s) 534, 552, 585
HgaI GACGC 2 cut(s) 413, 692
HhaI GCGC 1 cut(s) 551
Hin1I GRCGYC 1 cut(s) 974
Hin1II CATG 9 cut(s) 91, 106, 136, 211, 449, 576, 605, 1004, 1081
Hin6I GCGC 1 cut(s) 549
HinP1I GCGC 1 cut(s) 549
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HindIII AAGCTT 2 cut(s) 221, 737
HinfI GANTC 3 cut(s) 437, 499, 722
HpaII CCGG 3 cut(s) 534, 552, 585
HphI GGTGA 5 cut(s) 265, 385, 443, 788, 931
Hpy166II GTNNAC 4 cut(s) 154, 256, 796, 943
Hpy188I TCNGA 3 cut(s) 418, 660, 926
Hpy188III TCNNGA 6 cut(s) 68, 133, 189, 503, 868, 879
Hpy8I GTNNAC 4 cut(s) 154, 256, 796, 943
Hpy99I CGWCG 5 cut(s) 155, 563, 636, 854, 910
HpyAV CCTTC 1 cut(s) 1014
HpyCH4III ACNGT 3 cut(s) 49, 919, 1121
HpyCH4IV ACGT 4 cut(s) 150, 939, 974, 1034
HpyCH4V TGCA 6 cut(s) 328, 445, 572, 693, 1004, 1100
HpyF10VI GCNNNNNNNGC 4 cut(s) 93, 311, 555, 819
HpyF3I CTNAG 2 cut(s) 69, 141
HpySE526I ACGT 4 cut(s) 150, 939, 974, 1034
Hsp92I GRCGYC 1 cut(s) 974
Hsp92II CATG 9 cut(s) 91, 106, 136, 211, 449, 576, 605, 1004, 1081
HspAI GCGC 1 cut(s) 549
Kzo9I GATC 7 cut(s) 191, 413, 756, 921, 948, 1102, 1126
LmnI GCTCC 1 cut(s) 660
Lsp1109I GCAGC 3 cut(s) 105, 340, 822
MaeI CTAG 1 cut(s) 680
MaeII ACGT 4 cut(s) 150, 939, 974, 1034
MalI GATC 7 cut(s) 193, 415, 758, 923, 950, 1104, 1128
MboI GATC 7 cut(s) 191, 413, 756, 921, 948, 1102, 1126
MboII GAAGA 8 cut(s) 44, 153, 388, 415, 1027, 1051, 1058, 1127
MflI RGATCY 2 cut(s) 756, 1102
MhlI GDGCHC 2 cut(s) 17, 233
MluCI AATT 4 cut(s) 63, 521, 789, 845
MlyI GAGTC 1 cut(s) 431
MmeI TCCRAC 1 cut(s) 454
Mph1103I ATGCAT 2 cut(s) 695, 1006
MroXI GAANNNNTTC 1 cut(s) 792
MseI TTAA 5 cut(s) 219, 285, 711, 1008, 1107
MspCI CTTAAG 2 cut(s) 218, 1106
MspI CCGG 3 cut(s) 534, 552, 585
MspR9I CCNGG 1 cut(s) 251
MvaI CCWGG 1 cut(s) 251
MwoI GCNNNNNNNGC 4 cut(s) 93, 311, 555, 819
NcoI CCATGG 1 cut(s) 1077
NdeII GATC 7 cut(s) 191, 413, 756, 921, 948, 1102, 1126
NlaIII CATG 9 cut(s) 91, 106, 136, 211, 449, 576, 605, 1004, 1081
NlaIV GGNNCC 4 cut(s) 60, 578, 616, 654
NsiI ATGCAT 2 cut(s) 695, 1006
NspI RCATGY 2 cut(s) 449, 1004
PaeI GCATGC 1 cut(s) 1004
PagI TCATGA 1 cut(s) 132
PcsI WCGNNNNNNNCGW 1 cut(s) 393
PdmI GAANNNNTTC 1 cut(s) 792
PfeI GAWTC 2 cut(s) 499, 722
PflFI GACNNNGTC 1 cut(s) 47
PkrI GCNGC 5 cut(s) 95, 330, 343, 837, 968
Ple19I CGATCG 1 cut(s) 194
PleI GAGTC 1 cut(s) 431
PpsI GAGTC 1 cut(s) 431
Ppu21I YACGTR 1 cut(s) 940
Psp6I CCWGG 1 cut(s) 249
PspGI CCWGG 1 cut(s) 249
PspN4I GGNNCC 4 cut(s) 60, 578, 616, 654
PspPI GGNCC 2 cut(s) 614, 652
PstI CTGCAG 1 cut(s) 1102
PsuI RGATCY 2 cut(s) 756, 1102
PsyI GACNNNGTC 1 cut(s) 47
PvuI CGATCG 1 cut(s) 194
RsaI GTAC 4 cut(s) 386, 515, 989, 995
RsaNI GTAC 4 cut(s) 385, 514, 988, 994
SalI GTCGAC 1 cut(s) 152
SaqAI TTAA 5 cut(s) 219, 285, 711, 1008, 1107
SatI GCNGC 5 cut(s) 94, 329, 342, 836, 967
Sau3AI GATC 7 cut(s) 191, 413, 756, 921, 948, 1102, 1126
Sau96I GGNCC 2 cut(s) 614, 652
SchI GAGTC 1 cut(s) 431
ScrFI CCNGG 1 cut(s) 251
SduI GDGCHC 2 cut(s) 17, 233
SfcI CTRYAG 2 cut(s) 931, 1098
SinI GGWCC 1 cut(s) 652
SmlI CTYRAG 5 cut(s) 53, 218, 734, 740, 1106
SmoI CTYRAG 5 cut(s) 53, 218, 734, 740, 1106
SphI GCATGC 1 cut(s) 1004
Sse9I AATT 4 cut(s) 63, 521, 789, 845
SsiI CCGC 4 cut(s) 277, 341, 359, 966
SspI AATATT 1 cut(s) 1063
SspMI CTAG 1 cut(s) 680
StyD4I CCNGG 1 cut(s) 249
StyI CCWWGG 1 cut(s) 1077
TaaI ACNGT 3 cut(s) 49, 919, 1121
TaiI ACGT 4 cut(s) 153, 942, 977, 1037
TaqI TCGA 4 cut(s) 42, 153, 194, 849
TasI AATT 4 cut(s) 63, 521, 789, 845
TatI WGTACW 1 cut(s) 987
TauI GCSGC 2 cut(s) 344, 969
TfiI GAWTC 2 cut(s) 499, 722
Tru1I TTAA 5 cut(s) 219, 285, 711, 1008, 1107
Tru9I TTAA 5 cut(s) 219, 285, 711, 1008, 1107
TscAI CASTG 1 cut(s) 263
TseI GCWGC 3 cut(s) 93, 328, 835
TspDTI ATGAA 6 cut(s) 121, 149, 196, 416, 718, 887
TspGWI ACGGA 3 cut(s) 620, 800, 841
TspRI CASTG 1 cut(s) 263
Tth111I GACNNNGTC 1 cut(s) 47
Vha464I CTTAAG 2 cut(s) 218, 1106
VpaK11BI GGWCC 1 cut(s) 652
XceI RCATGY 2 cut(s) 449, 1004
XmiI GTMKAC 1 cut(s) 153
XmnI GAANNNNTTC 1 cut(s) 792
XspI CTAG 1 cut(s) 680
ZraI GACGTC 1 cut(s) 975
Zsp2I ATGCAT 2 cut(s) 695, 1006
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.