Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013543

Physical Location & Seq

Genomic Coordinates Reverse (-)

28421730 .. 28423520

Gene Structure 1791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G75690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGCCAGTTTCAGCTCCATCTCCGCCTCGTCTTCATTCTCCGTTCATTCACTGTCCCATCAATTTCACTCCTTCTTCTTTCTCGGCGAGGAATCTCCGGTCGCCGTCAACATCTTATCCCCGAATCAAAGCTGAACTCGATCCCAACACGGTAGTCGCGATATCTGTAGGCGTAGCAAGCGTCGCATTAGGAATCGGAATCCCTGTGTTCTACGAGACTCAAATCGACAATGCGGCTAAGCGAGAGAATACTCAACCTTGTTTTCCCTGTAATGGCACCGGAGCTCAGAAATGCAGATTGTGTGTGGGAAGTGGTAATGTGACCGTAGAGCTTGGTGGAGGAGAGAAAGAAGTCTCAAACTGTATCAACTGTGATGGTGCTGGTTCCTTAACTTGCACTACTTGTCAAGGCTCTGGTGTTCAACCTCGATACCTTGATCGAAGGGAGTTCAAGGACGATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009765 GO:0009987 GO:0010206 GO:0015979 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0019538 GO:0019684 GO:0030091 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

16.33

Weight (kDa)

6.7

Isoelectric Point (pI)

40.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF5351	PF17302	98 - 129	2.8e-08	Family of unknown function (DUF5351)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75690
fragaria_vesca	FvH4_2g38630 FvH4_2g38630
malus_domestica	MD08G1014000.v1.1 MD15G1013500.v1.1
prunus_persica	Prupe.1G367000_v2.0.a1
pyrus_communis	pycom08g01270 pycom15g01170
rosa_chinensis	RchiOBHm_Chr6g0302691
rosa_laevigata	RLG00000011147
rosa_multiflora	Rmu_sc0009897.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165430
rosa_rugosa	Rorug06G0316200
rosa_samantha	Rh6AG429600 Rh6BG473000 Rh6CG441900 Rh6DG428600
rosa_wichuraiana	Rw6G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	275
AccII	CGCG	1 cut(s)	158
AciI	CCGC	2 cut(s)	23, 233
AclWI	GGATC	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	272
AgsI	TTSAA	2 cut(s)	422, 451
AluBI	AGCT	4 cut(s)	14, 131, 284, 331
AluI	AGCT	4 cut(s)	14, 131, 284, 331
Alw21I	GWGCWC	1 cut(s)	286
Alw26I	GTCTC	2 cut(s)	209, 358
AlwI	GGATC	1 cut(s)	134
BanI	GGYRCC	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	286
BbsI	GAAGAC	1 cut(s)	23
Bbv12I	GWGCWC	1 cut(s)	286
BccI	CCATC	3 cut(s)	25, 65, 368
BceAI	ACGGC	1 cut(s)	88
BcoDI	GTCTC	2 cut(s)	209, 358
BfmI	CTRYAG	1 cut(s)	165
BisI	GCNGC	1 cut(s)	234
BlpI	GCTNAGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	235
BmiI	GGNNCC	2 cut(s)	277, 385
BpiI	GAAGAC	1 cut(s)	23
Bpu1102I	GCTNAGC	1 cut(s)	237
BsaWI	WCCGGW	2 cut(s)	96, 278
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse1I	ACTGG	1 cut(s)	5
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	1 cut(s)	299
BseNI	ACTGG	1 cut(s)	5
BseRI	GAGGAG	1 cut(s)	354
Bsh1236I	CGCG	1 cut(s)	158
Bsh1285I	CGRYCG	1 cut(s)	101
BshNI	GGYRCC	1 cut(s)	275
BsiEI	CGRYCG	1 cut(s)	101
BsiHKAI	GWGCWC	1 cut(s)	286
BsiSI	CCGG	2 cut(s)	97, 279
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmAI	GTCTC	2 cut(s)	209, 358
BsmFI	GGGAC	1 cut(s)	39
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp143I	GATC	2 cut(s)	139, 436
Bsp1720I	GCTNAGC	1 cut(s)	237
Bsp68I	TCGCGA	1 cut(s)	158
BspACI	CCGC	2 cut(s)	23, 233
BspCNI	CTCAG	1 cut(s)	298
BspFNI	CGCG	1 cut(s)	158
BspLI	GGNNCC	2 cut(s)	277, 385
BspPI	GGATC	1 cut(s)	134
BspT107I	GGYRCC	1 cut(s)	275
BsrI	ACTGG	1 cut(s)	5
BssMI	GATC	2 cut(s)	139, 436
Bst4CI	ACNGT	5 cut(s)	53, 151, 325, 362, 371
BstC8I	GCNNGC	1 cut(s)	178
BstDEI	CTNAG	2 cut(s)	237, 285
BstFNI	CGCG	1 cut(s)	158
BstKTI	GATC	2 cut(s)	142, 439
BstMAI	GTCTC	2 cut(s)	209, 358
BstMBI	GATC	2 cut(s)	139, 436
BstMCI	CGRYCG	1 cut(s)	101
BstMWI	GCNNNNNNNGC	2 cut(s)	177, 182
BstSFI	CTRYAG	1 cut(s)	165
BstUI	CGCG	1 cut(s)	158
BstV2I	GAAGAC	1 cut(s)	23
BtsIMutI	CAGTG	1 cut(s)	49
BtuMI	TCGCGA	1 cut(s)	158
Cac8I	GCNNGC	1 cut(s)	178
CseI	GACGC	1 cut(s)	169
CviJI	RGCY	6 cut(s)	14, 131, 236, 284, 331, 411
CviKI_1	RGCY	6 cut(s)	14, 131, 236, 284, 331, 411
DdeI	CTNAG	2 cut(s)	237, 285
DpnI	GATC	2 cut(s)	141, 438
DpnII	GATC	2 cut(s)	139, 436
EciI	GGCGGA	1 cut(s)	12
Ecl136II	GAGCTC	1 cut(s)	284
Eco24I	GRGCYC	1 cut(s)	286
Eco32I	GATATC	1 cut(s)	162
Eco53kI	GAGCTC	1 cut(s)	284
EcoICRI	GAGCTC	1 cut(s)	284
EcoRV	GATATC	1 cut(s)	162
EcoT38I	GRGCYC	1 cut(s)	286
FaqI	GGGAC	1 cut(s)	39
Fnu4HI	GCNGC	1 cut(s)	234
FriOI	GRGCYC	1 cut(s)	286
Fsp4HI	GCNGC	1 cut(s)	234
GluI	GCNGC	1 cut(s)	234
HapII	CCGG	2 cut(s)	97, 279
HgaI	GACGC	1 cut(s)	169
HincII	GTYRAC	1 cut(s)	108
HindII	GTYRAC	1 cut(s)	108
HinfI	GANTC	5 cut(s)	91, 123, 192, 198, 217
HpaII	CCGG	2 cut(s)	97, 279
Hpy166II	GTNNAC	1 cut(s)	108
Hpy188I	TCNGA	2 cut(s)	197, 288
Hpy188III	TCNNGA	1 cut(s)	157
Hpy8I	GTNNAC	1 cut(s)	108
Hpy99I	CGWCG	1 cut(s)	185
HpyAV	CCTTC	2 cut(s)	81, 435
HpyCH4III	ACNGT	5 cut(s)	53, 151, 325, 362, 371
HpyCH4V	TGCA	2 cut(s)	294, 396
HpyF10VI	GCNNNNNNNGC	2 cut(s)	177, 182
HpyF3I	CTNAG	2 cut(s)	237, 285
Kzo9I	GATC	2 cut(s)	139, 436
LmnI	GCTCC	2 cut(s)	19, 281
LpnPI	CCDG	7 cut(s)	18, 110, 216, 280, 292, 366, 399
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	2 cut(s)	141, 438
MboI	GATC	2 cut(s)	139, 436
MboII	GAAGA	2 cut(s)	23, 66
MhlI	GDGCHC	1 cut(s)	286
MluCI	AATT	1 cut(s)	61
MlyI	GAGTC	1 cut(s)	211
MnlI	CCTC	4 cut(s)	36, 81, 332, 435
MseI	TTAA	1 cut(s)	389
MspI	CCGG	2 cut(s)	97, 279
MvnI	CGCG	1 cut(s)	158
MwoI	GCNNNNNNNGC	2 cut(s)	177, 182
NdeII	GATC	2 cut(s)	139, 436
NlaIV	GGNNCC	2 cut(s)	277, 385
NmeAIII	GCCGAG	1 cut(s)	62
NmuCI	GTSAC	1 cut(s)	319
NruI	TCGCGA	1 cut(s)	158
PcsI	WCGNNNNNNNCGW	1 cut(s)	155
PfeI	GAWTC	4 cut(s)	91, 123, 192, 198
PkrI	GCNGC	1 cut(s)	235
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
Psp124BI	GAGCTC	1 cut(s)	286
PspN4I	GGNNCC	2 cut(s)	277, 385
RruI	TCGCGA	1 cut(s)	158
SacI	GAGCTC	1 cut(s)	286
SaqAI	TTAA	1 cut(s)	389
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	2 cut(s)	139, 436
SchI	GAGTC	1 cut(s)	211
SduI	GDGCHC	1 cut(s)	286
SetI	ASST	7 cut(s)	16, 133, 259, 286, 333, 427, 435
SfcI	CTRYAG	1 cut(s)	165
Sse9I	AATT	1 cut(s)	61
SsiI	CCGC	2 cut(s)	23, 233
SstI	GAGCTC	1 cut(s)	286
TaaI	ACNGT	5 cut(s)	53, 151, 325, 362, 371
TaqI	TCGA	4 cut(s)	138, 225, 427, 439
TasI	AATT	1 cut(s)	61
TauI	GCSGC	1 cut(s)	236
TfiI	GAWTC	4 cut(s)	91, 123, 192, 198
Tru1I	TTAA	1 cut(s)	389
Tru9I	TTAA	1 cut(s)	389
TscAI	CASTG	1 cut(s)	56
TseFI	GTSAC	1 cut(s)	319
Tsp45I	GTSAC	1 cut(s)	319
TspDTI	ATGAA	2 cut(s)	23, 34
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.