Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0013543

Physical Location & Seq

Genomic Coordinates Forward (+)

629317 .. 630340

Gene Structure 1024 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g01170.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGTCACAAGCACCCTCACTCCCCCGTCTTCGCTCTCCCTTCCTTTCTTGCCCCCTCAAGCTTTCCACCTCCCCTTCTTCCTTCTGCGCGTCCCACAAGTTTGCAGGAAATCAACGGTCACCGAAGTCGTATCCATGCATCAGAGCCATTGATCTCGATCAAAACACGGTAGTTGCAATCTCAGTTGGGCTTGTGAGTGTTGCCGTCGGGATTGGCATTCCGGTTTTCTACGAAACACAGATCGACAGTGCTGCAAAGCGAGACAACACTCAGCCATGCTTCCCTTGCAATGGAACCGGCGCACAAAAATGCAGATTTTGCACGGGAAGTGGGACGGTGGCAGTAGAGCTTGGCGGGGGTGAGAAAGAGGTGTCCAACTGCATCAACTGCGAAGGGGTCGGTTCGTTTACGTGCACAACATGTCAGGGTTCTGGGATTCAGCCTCGGTACCTTGATCGCAGAGAATTCAAAGACGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009765 GO:0009987 GO:0010206 GO:0015979 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0019538 GO:0019684 GO:0030091 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

161

Amino Acids

17.02

Weight (kDa)

8.0

Isoelectric Point (pI)

43.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75690
fragaria_vesca	FvH4_2g38630 FvH4_2g38630
malus_domestica	MD08G1014000.v1.1 MD15G1013500.v1.1
prunus_persica	Prupe.1G367000_v2.0.a1
pyrus_communis	pycom08g01270 pycom15g01170
rosa_chinensis	RchiOBHm_Chr6g0302691
rosa_laevigata	RLG00000011147
rosa_multiflora	Rmu_sc0009897.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165430
rosa_rugosa	Rorug06G0316200
rosa_samantha	Rh6AG429600 Rh6BG473000 Rh6CG441900 Rh6DG428600
rosa_wichuraiana	Rw6G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	447
AccB1I	GGYRCC	1 cut(s)	447
AccII	CGCG	1 cut(s)	89
AciI	CCGC	1 cut(s)	354
AcsI	RAATTY	1 cut(s)	464
AfaI	GTAC	1 cut(s)	449
AfiI	CCNNNNNNNGG	1 cut(s)	290
AflIII	ACRYGT	1 cut(s)	419
AgsI	TTSAA	1 cut(s)	469
AluBI	AGCT	2 cut(s)	61, 349
AluI	AGCT	2 cut(s)	61, 349
Alw21I	GWGCWC	1 cut(s)	416
Alw26I	GTCTC	1 cut(s)	255
Alw44I	GTGCAC	1 cut(s)	412
ApaLI	GTGCAC	1 cut(s)	412
ApeKI	GCWGC	1 cut(s)	251
ApoI	RAATTY	1 cut(s)	464
Asp718I	GGTACC	1 cut(s)	447
AspLEI	GCGC	2 cut(s)	89, 302
AsuHPI	GGTGA	2 cut(s)	111, 371
BaeGI	GKGCMC	1 cut(s)	416
BanI	GGYRCC	1 cut(s)	447
BbsI	GAAGAC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	416
BbvI	GCAGC	1 cut(s)	238
BceAI	ACGGC	1 cut(s)	188
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BciVI	GTATCC	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	255
BfuI	GTATCC	1 cut(s)	141
BisI	GCNGC	1 cut(s)	252
BlsI	GCNGC	1 cut(s)	253
BmiI	GGNNCC	2 cut(s)	295, 449
BmsI	GCATC	2 cut(s)	147, 390
BpiI	GAAGAC	1 cut(s)	20
BpuEI	CTTGAG	1 cut(s)	41
BsaAI	YACGTR	1 cut(s)	411
BsaBI	GATNNNNATC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	443
BsaWI	WCCGGW	1 cut(s)	220
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse118I	RCCGGY	1 cut(s)	296
Bse3DI	GCAATG	1 cut(s)	295
Bse8I	GATNNNNATC	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	443
BseJI	GATNNNNATC	1 cut(s)	156
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMI	GCAATG	1 cut(s)	295
BseMII	CTCAG	2 cut(s)	195, 284
BseSI	GKGCMC	1 cut(s)	416
BseXI	GCAGC	1 cut(s)	238
Bsh1236I	CGCG	1 cut(s)	89
BshNI	GGYRCC	1 cut(s)	447
BsiHKAI	GWGCWC	1 cut(s)	416
BsiSI	CCGG	2 cut(s)	221, 297
BslFI	GGGAC	2 cut(s)	76, 346
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmAI	GTCTC	1 cut(s)	255
BsmFI	GGGAC	2 cut(s)	76, 346
BsmI	GAATGC	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	416
Bsp143I	GATC	4 cut(s)	151, 157, 240, 454
BspACI	CCGC	1 cut(s)	354
BspCNI	CTCAG	2 cut(s)	194, 283
BspFNI	CGCG	1 cut(s)	89
BspLI	GGNNCC	2 cut(s)	295, 449
BspT107I	GGYRCC	1 cut(s)	447
BsrDI	GCAATG	1 cut(s)	295
BsrFI	RCCGGY	1 cut(s)	296
BssAI	RCCGGY	1 cut(s)	296
BssECI	CCNNGG	1 cut(s)	443
BssMI	GATC	4 cut(s)	151, 157, 240, 454
Bst4CI	ACNGT	4 cut(s)	117, 169, 248, 337
BstAPI	GCANNNNNTGC	2 cut(s)	318, 387
BstBAI	YACGTR	1 cut(s)	411
BstDEI	CTNAG	2 cut(s)	181, 270
BstEII	GGTNACC	1 cut(s)	117
BstFNI	CGCG	1 cut(s)	89
BstHHI	GCGC	2 cut(s)	89, 302
BstKTI	GATC	4 cut(s)	154, 160, 243, 457
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	4 cut(s)	151, 157, 240, 454
BstMWI	GCNNNNNNNGC	3 cut(s)	285, 318, 387
BstNSI	RCATGY	1 cut(s)	423
BstPI	GGTNACC	1 cut(s)	117
BstSLI	GKGCMC	1 cut(s)	416
BstUI	CGCG	1 cut(s)	89
BstV1I	GCAGC	1 cut(s)	238
BstV2I	GAAGAC	1 cut(s)	20
BsuI	GTATCC	1 cut(s)	141
BtsIMutI	CAGTG	1 cut(s)	253
CfoI	GCGC	2 cut(s)	89, 302
Cfr10I	RCCGGY	1 cut(s)	296
CseI	GACGC	1 cut(s)	78
Csp6I	GTAC	1 cut(s)	448
CviAII	CATG	3 cut(s)	135, 276, 420
CviJI	RGCY	6 cut(s)	61, 146, 190, 274, 349, 442
CviKI_1	RGCY	6 cut(s)	61, 146, 190, 274, 349, 442
CviQI	GTAC	1 cut(s)	448
DdeI	CTNAG	2 cut(s)	181, 270
DpnI	GATC	4 cut(s)	153, 159, 242, 456
DpnII	GATC	4 cut(s)	151, 157, 240, 454
Eco91I	GGTNACC	1 cut(s)	117
EcoO65I	GGTNACC	1 cut(s)	117
EcoRI	GAATTC	1 cut(s)	464
EcoT22I	ATGCAT	1 cut(s)	140
FaeI	CATG	3 cut(s)	138, 279, 423
FaiI	YATR	3 cut(s)	136, 277, 421
FaqI	GGGAC	2 cut(s)	76, 346
FatI	CATG	3 cut(s)	134, 275, 419
FauI	CCCGC	1 cut(s)	347
Fnu4HI	GCNGC	1 cut(s)	252
Fsp4HI	GCNGC	1 cut(s)	252
GlaI	GCGC	2 cut(s)	88, 301
GluI	GCNGC	1 cut(s)	252
HapII	CCGG	2 cut(s)	221, 297
HgaI	GACGC	1 cut(s)	78
HhaI	GCGC	2 cut(s)	89, 302
Hin1II	CATG	3 cut(s)	138, 279, 423
Hin6I	GCGC	2 cut(s)	87, 300
HinP1I	GCGC	2 cut(s)	87, 300
HindIII	AAGCTT	1 cut(s)	59
HinfI	GANTC	1 cut(s)	436
HpaII	CCGG	2 cut(s)	221, 297
HphI	GGTGA	2 cut(s)	111, 371
Hpy166II	GTNNAC	2 cut(s)	408, 414
Hpy188I	TCNGA	1 cut(s)	143
Hpy188III	TCNNGA	2 cut(s)	155, 208
Hpy8I	GTNNAC	2 cut(s)	408, 414
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	4 cut(s)	49, 84, 91, 386
HpyCH4III	ACNGT	4 cut(s)	117, 169, 248, 337
HpyCH4IV	ACGT	1 cut(s)	410
HpyCH4V	TGCA	9 cut(s)	104, 138, 176, 254, 288, 312, 321, 381, 414
HpyF10VI	GCNNNNNNNGC	3 cut(s)	285, 318, 387
HpyF3I	CTNAG	2 cut(s)	181, 270
HpySE526I	ACGT	1 cut(s)	410
Hsp92II	CATG	3 cut(s)	138, 279, 423
HspAI	GCGC	2 cut(s)	87, 300
KpnI	GGTACC	1 cut(s)	451
Kzo9I	GATC	4 cut(s)	151, 157, 240, 454
LpnPI	CCDG	5 cut(s)	90, 234, 310, 410, 417
Lsp1109I	GCAGC	1 cut(s)	238
LweI	GCATC	2 cut(s)	147, 390
MaeII	ACGT	1 cut(s)	410
MaeIII	GTNAC	2 cut(s)	3, 117
MalI	GATC	4 cut(s)	153, 159, 242, 456
MboI	GATC	4 cut(s)	151, 157, 240, 454
MboII	GAAGA	2 cut(s)	20, 69
MhlI	GDGCHC	1 cut(s)	416
MluCI	AATT	1 cut(s)	464
MmeI	TCCRAC	1 cut(s)	399
MnlI	CCTC	5 cut(s)	25, 65, 79, 361, 453
Mph1103I	ATGCAT	1 cut(s)	140
MslI	CAYNNNNRTG	1 cut(s)	307
MspI	CCGG	2 cut(s)	221, 297
Mva1269I	GAATGC	1 cut(s)	216
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	3 cut(s)	285, 318, 387
NdeII	GATC	4 cut(s)	151, 157, 240, 454
NlaIII	CATG	3 cut(s)	138, 279, 423
NlaIV	GGNNCC	2 cut(s)	295, 449
NmuCI	GTSAC	2 cut(s)	3, 117
NsiI	ATGCAT	1 cut(s)	140
NspI	RCATGY	1 cut(s)	423
PciI	ACATGT	1 cut(s)	419
PctI	GAATGC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	436
PkrI	GCNGC	1 cut(s)	253
Ppu21I	YACGTR	1 cut(s)	411
PscI	ACATGT	1 cut(s)	419
PspEI	GGTNACC	1 cut(s)	117
PspN4I	GGNNCC	2 cut(s)	295, 449
RsaI	GTAC	1 cut(s)	449
RsaNI	GTAC	1 cut(s)	448
RseI	CAYNNNNRTG	1 cut(s)	307
SatI	GCNGC	1 cut(s)	252
Sau3AI	GATC	4 cut(s)	151, 157, 240, 454
SduI	GDGCHC	1 cut(s)	416
SetI	ASST	6 cut(s)	63, 71, 351, 372, 413, 453
SfaNI	GCATC	2 cut(s)	147, 390
SmiMI	CAYNNNNRTG	1 cut(s)	307
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	1 cut(s)	464
SsiI	CCGC	1 cut(s)	354
TaaI	ACNGT	4 cut(s)	117, 169, 248, 337
TaiI	ACGT	1 cut(s)	413
TaqI	TCGA	2 cut(s)	156, 243
TasI	AATT	1 cut(s)	464
TfiI	GAWTC	1 cut(s)	436
TscAI	CASTG	1 cut(s)	253
TseFI	GTSAC	2 cut(s)	3, 117
TseI	GCWGC	1 cut(s)	251
Tsp45I	GTSAC	2 cut(s)	3, 117
TspRI	CASTG	1 cut(s)	253
VneI	GTGCAC	1 cut(s)	412
XapI	RAATTY	1 cut(s)	464
XceI	RCATGY	1 cut(s)	423
Zsp2I	ATGCAT	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.