Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0013543

Physical Location & Seq

Genomic Coordinates Reverse (-)

60896281 .. 60899211

Gene Structure 2931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG428600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTCAATAGCACCCTCACTCCCTCGTCTACACTCTCCTTTCCTATGTTGCCCGCTCAAGCTTTCTTCTACCTCTCCTTGTCTTTCCCACAAGTTGGCTCAACGCTCGCCCAAGTTATATCCATGCATCAGAGCTGTTGATCTTGATCAAAACACGGTAGTGGCAATCTCAGTAGGGCTGGTGAGTGTTGCGGTTGGGATAGGCATTCCGGTTTTCTACGAATCTCAAATCGATAATGCTTCCAAGCGAGACAATACTCAGCCCTGCTTCCCTTGCAATGGAACAGGCGCACAAAGATGCCGATTTTGCACTGGAAGTGGCACGGTCACGGTAGAGCTTGGTGGGGATGAGAAAGAAGTGTCTAAATGCATTAACTGTGAAGGGGTCGGATCATTTACATGCACCACATGTCAAGGTTCTGGGATTCAACCTCGATACCTTGATCGCAGAGAATTCAAAGACGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009765 GO:0009987 GO:0010206 GO:0015979 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0019538 GO:0019684 GO:0030091 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

156

Amino Acids

16.78

Weight (kDa)

7.44

Isoelectric Point (pI)

36.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF5351	PF17302	100 - 131	5e-08	Family of unknown function (DUF5351)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75690
fragaria_vesca	FvH4_2g38630 FvH4_2g38630
malus_domestica	MD08G1014000.v1.1 MD15G1013500.v1.1
prunus_persica	Prupe.1G367000_v2.0.a1
pyrus_communis	pycom08g01270 pycom15g01170
rosa_chinensis	RchiOBHm_Chr6g0302691
rosa_laevigata	RLG00000011147
rosa_multiflora	Rmu_sc0009897.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165430
rosa_rugosa	Rorug06G0316200
rosa_samantha	Rh6AG429600 Rh6BG473000 Rh6CG441900 Rh6DG428600
rosa_wichuraiana	Rw6G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	94
AccBSI	CCGCTC	1 cut(s)	55
AccI	GTMKAC	1 cut(s)	28
AciI	CCGC	2 cut(s)	53, 191
AclWI	GGATC	1 cut(s)	397
AcsI	RAATTY	1 cut(s)	452
AfiI	CCNNNNNNNGG	2 cut(s)	94, 278
AflIII	ACRYGT	1 cut(s)	407
AgsI	TTSAA	2 cut(s)	428, 457
AleI	CACNNNNGTG	1 cut(s)	158
AluBI	AGCT	3 cut(s)	61, 134, 337
AluI	AGCT	3 cut(s)	61, 134, 337
Alw26I	GTCTC	1 cut(s)	243
AlwI	GGATC	1 cut(s)	397
ApoI	RAATTY	1 cut(s)	452
AspLEI	GCGC	1 cut(s)	290
AsuHPI	GGTGA	1 cut(s)	193
BclI	TGATCA	1 cut(s)	145
BcoDI	GTCTC	1 cut(s)	243
BmsI	GCATC	2 cut(s)	135, 287
BpuEI	CTTGAG	1 cut(s)	41
Bsa29I	ATCGAT	1 cut(s)	231
BsaBI	GATNNNNATC	1 cut(s)	144
BsaWI	WCCGGW	1 cut(s)	208
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 278
Bse1I	ACTGG	1 cut(s)	316
Bse3DI	GCAATG	1 cut(s)	283
Bse8I	GATNNNNATC	1 cut(s)	144
BseCI	ATCGAT	1 cut(s)	231
BseGI	GGATG	1 cut(s)	352
BseJI	GATNNNNATC	1 cut(s)	144
BseLI	CCNNNNNNNGG	2 cut(s)	94, 278
BseMI	GCAATG	1 cut(s)	283
BseMII	CTCAG	2 cut(s)	183, 272
BseNI	ACTGG	1 cut(s)	316
BshVI	ATCGAT	1 cut(s)	231
BsiSI	CCGG	1 cut(s)	209
BslI	CCNNNNNNNGG	2 cut(s)	94, 278
BsmAI	GTCTC	1 cut(s)	243
BsmI	GAATGC	1 cut(s)	204
Bsp143I	GATC	4 cut(s)	139, 145, 389, 442
BspACI	CCGC	2 cut(s)	53, 191
BspCNI	CTCAG	2 cut(s)	182, 271
BspDI	ATCGAT	1 cut(s)	231
BspPI	GGATC	1 cut(s)	397
BsrBI	CCGCTC	1 cut(s)	55
BsrDI	GCAATG	1 cut(s)	283
BsrI	ACTGG	1 cut(s)	316
BssMI	GATC	4 cut(s)	139, 145, 389, 442
Bst4CI	ACNGT	4 cut(s)	157, 325, 331, 377
BstC8I	GCNNGC	2 cut(s)	53, 107
BstDEI	CTNAG	2 cut(s)	169, 258
BstF5I	GGATG	1 cut(s)	352
BstHHI	GCGC	1 cut(s)	290
BstKTI	GATC	4 cut(s)	142, 148, 392, 445
BstMAI	GTCTC	1 cut(s)	243
BstMBI	GATC	4 cut(s)	139, 145, 389, 442
BstMWI	GCNNNNNNNGC	2 cut(s)	273, 306
BstNSI	RCATGY	2 cut(s)	402, 411
Bsu15I	ATCGAT	1 cut(s)	231
BsuTUI	ATCGAT	1 cut(s)	231
BtsCI	GGATG	1 cut(s)	352
BtsIMutI	CAGTG	1 cut(s)	309
Cac8I	GCNNGC	2 cut(s)	53, 107
CfoI	GCGC	1 cut(s)	290
ClaI	ATCGAT	1 cut(s)	231
CviAII	CATG	3 cut(s)	123, 399, 408
CviJI	RGCY	6 cut(s)	61, 98, 134, 178, 262, 337
CviKI_1	RGCY	6 cut(s)	61, 98, 134, 178, 262, 337
DdeI	CTNAG	2 cut(s)	169, 258
DpnI	GATC	4 cut(s)	141, 147, 391, 444
DpnII	GATC	4 cut(s)	139, 145, 389, 442
EcoRI	GAATTC	1 cut(s)	452
EcoT22I	ATGCAT	2 cut(s)	128, 371
FaeI	CATG	3 cut(s)	126, 402, 411
FaiI	YATR	5 cut(s)	46, 118, 124, 400, 409
FatI	CATG	3 cut(s)	122, 398, 407
FauI	CCCGC	1 cut(s)	60
FbaI	TGATCA	1 cut(s)	145
FblI	GTMKAC	1 cut(s)	28
FokI	GGATG	1 cut(s)	359
GlaI	GCGC	1 cut(s)	289
HapII	CCGG	1 cut(s)	209
HhaI	GCGC	1 cut(s)	290
Hin1II	CATG	3 cut(s)	126, 402, 411
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
HindIII	AAGCTT	1 cut(s)	59
HinfI	GANTC	2 cut(s)	221, 424
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	1 cut(s)	29
Hpy188I	TCNGA	2 cut(s)	131, 389
Hpy188III	TCNNGA	1 cut(s)	143
Hpy8I	GTNNAC	1 cut(s)	29
HpyAV	CCTTC	1 cut(s)	374
HpyCH4III	ACNGT	4 cut(s)	157, 325, 331, 377
HpyCH4V	TGCA	5 cut(s)	126, 276, 309, 369, 402
HpyF10VI	GCNNNNNNNGC	2 cut(s)	273, 306
HpyF3I	CTNAG	2 cut(s)	169, 258
Hsp92II	CATG	3 cut(s)	126, 402, 411
HspAI	GCGC	1 cut(s)	288
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	4 cut(s)	139, 145, 389, 442
LpnPI	CCDG	6 cut(s)	164, 222, 270, 277, 297, 405
LweI	GCATC	2 cut(s)	135, 287
MaeIII	GTNAC	1 cut(s)	325
MalI	GATC	4 cut(s)	141, 147, 391, 444
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	4 cut(s)	139, 145, 389, 442
MboII	GAAGA	1 cut(s)	57
MluCI	AATT	1 cut(s)	452
MmeI	TCCRAC	1 cut(s)	367
MnlI	CCTC	4 cut(s)	25, 33, 82, 441
Mph1103I	ATGCAT	2 cut(s)	128, 371
MseI	TTAA	1 cut(s)	372
MslI	CAYNNNNRTG	3 cut(s)	158, 295, 397
MspI	CCGG	1 cut(s)	209
Mva1269I	GAATGC	1 cut(s)	204
MwoI	GCNNNNNNNGC	2 cut(s)	273, 306
NdeII	GATC	4 cut(s)	139, 145, 389, 442
NlaIII	CATG	3 cut(s)	126, 402, 411
NmuCI	GTSAC	1 cut(s)	325
NsiI	ATGCAT	2 cut(s)	128, 371
NspI	RCATGY	2 cut(s)	402, 411
OliI	CACNNNNGTG	1 cut(s)	158
PciI	ACATGT	1 cut(s)	407
PctI	GAATGC	1 cut(s)	204
PfeI	GAWTC	2 cut(s)	221, 424
PflMI	CCANNNNNTGG	1 cut(s)	94
PscI	ACATGT	1 cut(s)	407
RseI	CAYNNNNRTG	3 cut(s)	158, 295, 397
SaqAI	TTAA	1 cut(s)	372
Sau3AI	GATC	4 cut(s)	139, 145, 389, 442
SetI	ASST	7 cut(s)	63, 74, 136, 339, 418, 433, 441
SfaNI	GCATC	2 cut(s)	135, 287
SmiMI	CAYNNNNRTG	3 cut(s)	158, 295, 397
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
Sse9I	AATT	1 cut(s)	452
SsiI	CCGC	2 cut(s)	53, 191
TaaI	ACNGT	4 cut(s)	157, 325, 331, 377
TaqI	TCGA	2 cut(s)	231, 433
TasI	AATT	1 cut(s)	452
TfiI	GAWTC	2 cut(s)	221, 424
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	1 cut(s)	325
Tsp45I	GTSAC	1 cut(s)	325
TspRI	CASTG	1 cut(s)	316
Van91I	CCANNNNNTGG	1 cut(s)	94
XapI	RAATTY	1 cut(s)	452
XceI	RCATGY	2 cut(s)	402, 411
XmiI	GTMKAC	1 cut(s)	28
Zsp2I	ATGCAT	2 cut(s)	128, 371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.