Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0013543

Physical Location & Seq

Genomic Coordinates Forward (+)

942347 .. 943399

Gene Structure 1053 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g01270.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGCCGCAAGCACCATCACTCCCCCGCCTCCACTCTCCCTTCCTCTCTTGCCCCCTCAAGCTCTTCACCTCCCCTTGTTCCTTACGCGTGTCCCACAAGTTTGCAGGAAATCAACGGTCGCCAAAGTCGTATCCATGCATCAGAGCCATTGATCTCGATCAAAACACGGTAGTGGCAATCTCAGTTGGGTTTGCGAGTGTTGCGGTTGGGATTGGCATTCCGGTTTTCTACGAAACACAGATCGACAGTGCTGCTAAGAGAGACAACACTCAGCCATGCTTCCCCTGCAATGGAACTGGCGCTCGTAAGTTCTGCACGGGGAGTGGGACGGTGACAGTAGAGCTTGGCGGGGGCGAGAAAGAAGTGTCCAACTGCATCAACTGCGAAGGGGTCGGTTCGTTTACGTGCACAACGTGTCAGGGTTCCGGGATTCAACCTCGGTACCTTGATCGCAGAGAGTTCAAAGATGATGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009765 GO:0009987 GO:0010206 GO:0015979 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0019538 GO:0019684 GO:0030091 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

159

Amino Acids

16.94

Weight (kDa)

8.04

Isoelectric Point (pI)

37.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75690
fragaria_vesca	FvH4_2g38630 FvH4_2g38630
malus_domestica	MD08G1014000.v1.1 MD15G1013500.v1.1
prunus_persica	Prupe.1G367000_v2.0.a1
pyrus_communis	pycom08g01270 pycom15g01170
rosa_chinensis	RchiOBHm_Chr6g0302691
rosa_laevigata	RLG00000011147
rosa_multiflora	Rmu_sc0009897.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165430
rosa_rugosa	Rorug06G0316200
rosa_samantha	Rh6AG429600 Rh6BG473000 Rh6CG441900 Rh6DG428600
rosa_wichuraiana	Rw6G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	441
AccB1I	GGYRCC	1 cut(s)	441
AccII	CGCG	1 cut(s)	87
AciI	CCGC	4 cut(s)	5, 25, 203, 348
AdeI	CACNNNGTG	1 cut(s)	414
AfaI	GTAC	1 cut(s)	443
AfiI	CCNNNNNNNGG	1 cut(s)	290
AflIII	ACRYGT	2 cut(s)	85, 413
AgsI	TTSAA	2 cut(s)	434, 463
AleI	CACNNNNGTG	1 cut(s)	170
AluBI	AGCT	2 cut(s)	61, 343
AluI	AGCT	2 cut(s)	61, 343
Alw21I	GWGCWC	1 cut(s)	410
Alw26I	GTCTC	1 cut(s)	255
Alw44I	GTGCAC	1 cut(s)	406
ApaLI	GTGCAC	1 cut(s)	406
ApeKI	GCWGC	1 cut(s)	251
Asp718I	GGTACC	1 cut(s)	441
AspLEI	GCGC	1 cut(s)	302
AsuC2I	CCSGG	1 cut(s)	427
AsuHPI	GGTGA	2 cut(s)	58, 343
BaeGI	GKGCMC	1 cut(s)	410
BaeI	ACNNNNGTAYC	2 cut(s)	425, 458
BanI	GGYRCC	1 cut(s)	441
Bbv12I	GWGCWC	1 cut(s)	410
BbvI	GCAGC	1 cut(s)	238
BccI	CCATC	1 cut(s)	22
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BciVI	GTATCC	1 cut(s)	141
BcnI	CCSGG	1 cut(s)	427
BcoDI	GTCTC	1 cut(s)	255
BfoI	RGCGCY	1 cut(s)	303
BfuI	GTATCC	1 cut(s)	141
BisI	GCNGC	2 cut(s)	5, 252
BlsI	GCNGC	2 cut(s)	6, 253
Bme1390I	CCNGG	1 cut(s)	427
BmiI	GGNNCC	2 cut(s)	424, 443
BmrFI	CCNGG	1 cut(s)	427
BmsI	GCATC	2 cut(s)	147, 384
BpuEI	CTTGAG	1 cut(s)	41
BpuMI	CCSGG	1 cut(s)	427
BsaAI	YACGTR	1 cut(s)	405
BsaBI	GATNNNNATC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	437
BsaWI	WCCGGW	1 cut(s)	220
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse1I	ACTGG	1 cut(s)	301
Bse3DI	GCAATG	1 cut(s)	295
Bse8I	GATNNNNATC	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	437
BseJI	GATNNNNATC	1 cut(s)	156
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseMI	GCAATG	1 cut(s)	295
BseMII	CTCAG	2 cut(s)	195, 284
BseNI	ACTGG	1 cut(s)	301
BseSI	GKGCMC	1 cut(s)	410
BseXI	GCAGC	1 cut(s)	238
BsgI	GTGCAG	1 cut(s)	298
Bsh1236I	CGCG	1 cut(s)	87
Bsh1285I	CGRYCG	1 cut(s)	119
BshNI	GGYRCC	1 cut(s)	441
BsiEI	CGRYCG	1 cut(s)	119
BsiHKAI	GWGCWC	1 cut(s)	410
BsiSI	CCGG	2 cut(s)	221, 426
BslFI	GGGAC	2 cut(s)	76, 340
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmAI	GTCTC	1 cut(s)	255
BsmFI	GGGAC	2 cut(s)	76, 340
BsmI	GAATGC	1 cut(s)	216
Bsp1286I	GDGCHC	1 cut(s)	410
Bsp143I	GATC	4 cut(s)	151, 157, 240, 448
BspACI	CCGC	4 cut(s)	5, 25, 203, 348
BspCNI	CTCAG	2 cut(s)	194, 283
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	424, 443
BspQI	GCTCTTC	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	441
BsrDI	GCAATG	1 cut(s)	295
BsrI	ACTGG	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	437
BssMI	GATC	4 cut(s)	151, 157, 240, 448
Bst4CI	ACNGT	5 cut(s)	117, 169, 248, 331, 337
Bst6I	CTCTTC	1 cut(s)	68
BstAPI	GCANNNNNTGC	1 cut(s)	381
BstBAI	YACGTR	1 cut(s)	405
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	3 cut(s)	181, 255, 270
BstFNI	CGCG	1 cut(s)	87
BstH2I	RGCGCY	1 cut(s)	303
BstHHI	GCGC	1 cut(s)	302
BstKTI	GATC	4 cut(s)	154, 160, 243, 451
BstMAI	GTCTC	1 cut(s)	255
BstMBI	GATC	4 cut(s)	151, 157, 240, 448
BstMCI	CGRYCG	1 cut(s)	119
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 285, 381
BstSCI	CCNGG	1 cut(s)	425
BstSLI	GKGCMC	1 cut(s)	410
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	1 cut(s)	238
BsuI	GTATCC	1 cut(s)	141
BtsIMutI	CAGTG	1 cut(s)	253
Cac8I	GCNNGC	1 cut(s)	9
CfoI	GCGC	1 cut(s)	302
Csp6I	GTAC	1 cut(s)	442
CviAII	CATG	2 cut(s)	135, 276
CviJI	RGCY	4 cut(s)	61, 146, 274, 343
CviKI_1	RGCY	4 cut(s)	61, 146, 274, 343
CviQI	GTAC	1 cut(s)	442
DdeI	CTNAG	3 cut(s)	181, 255, 270
DpnI	GATC	4 cut(s)	153, 159, 242, 450
DpnII	GATC	4 cut(s)	151, 157, 240, 448
DraIII	CACNNNGTG	1 cut(s)	414
Eam1104I	CTCTTC	1 cut(s)	68
EarI	CTCTTC	1 cut(s)	68
EcoT22I	ATGCAT	1 cut(s)	140
FaeI	CATG	2 cut(s)	138, 279
FaiI	YATR	2 cut(s)	136, 277
FaqI	GGGAC	2 cut(s)	76, 340
FatI	CATG	2 cut(s)	134, 275
FauI	CCCGC	2 cut(s)	32, 341
Fnu4HI	GCNGC	2 cut(s)	5, 252
Fsp4HI	GCNGC	2 cut(s)	5, 252
GlaI	GCGC	1 cut(s)	301
GluI	GCNGC	2 cut(s)	5, 252
HaeII	RGCGCY	1 cut(s)	303
HapII	CCGG	2 cut(s)	221, 426
HhaI	GCGC	1 cut(s)	302
Hin1II	CATG	2 cut(s)	138, 279
Hin6I	GCGC	1 cut(s)	300
HinP1I	GCGC	1 cut(s)	300
HinfI	GANTC	1 cut(s)	430
HpaII	CCGG	2 cut(s)	221, 426
HphI	GGTGA	2 cut(s)	58, 343
Hpy166II	GTNNAC	2 cut(s)	402, 408
Hpy188I	TCNGA	1 cut(s)	143
Hpy188III	TCNNGA	1 cut(s)	155
Hpy8I	GTNNAC	2 cut(s)	402, 408
HpyAV	CCTTC	2 cut(s)	49, 380
HpyCH4III	ACNGT	5 cut(s)	117, 169, 248, 331, 337
HpyCH4IV	ACGT	2 cut(s)	404, 413
HpyCH4V	TGCA	6 cut(s)	104, 138, 288, 315, 375, 408
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 285, 381
HpyF3I	CTNAG	3 cut(s)	181, 255, 270
HpySE526I	ACGT	2 cut(s)	404, 413
Hsp92II	CATG	2 cut(s)	138, 279
HspAI	GCGC	1 cut(s)	300
KpnI	GGTACC	1 cut(s)	445
Kzo9I	GATC	4 cut(s)	151, 157, 240, 448
LguI	GCTCTTC	1 cut(s)	68
LpnPI	CCDG	6 cut(s)	90, 234, 282, 298, 404, 439
Lsp1109I	GCAGC	1 cut(s)	238
LweI	GCATC	2 cut(s)	147, 384
MaeII	ACGT	2 cut(s)	404, 413
MaeIII	GTNAC	1 cut(s)	331
MalI	GATC	4 cut(s)	153, 159, 242, 450
MboI	GATC	4 cut(s)	151, 157, 240, 448
MboII	GAAGA	1 cut(s)	55
MhlI	GDGCHC	1 cut(s)	410
MluI	ACGCGT	1 cut(s)	85
MmeI	TCCRAC	1 cut(s)	393
MnlI	CCTC	5 cut(s)	38, 53, 65, 79, 447
Mph1103I	ATGCAT	1 cut(s)	140
MslI	CAYNNNNRTG	1 cut(s)	170
MspI	CCGG	2 cut(s)	221, 426
MspR9I	CCNGG	1 cut(s)	427
Mva1269I	GAATGC	1 cut(s)	216
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	3 cut(s)	200, 285, 381
NciI	CCSGG	1 cut(s)	427
NdeII	GATC	4 cut(s)	151, 157, 240, 448
NlaIII	CATG	2 cut(s)	138, 279
NlaIV	GGNNCC	2 cut(s)	424, 443
NmuCI	GTSAC	1 cut(s)	331
NsiI	ATGCAT	1 cut(s)	140
OliI	CACNNNNGTG	1 cut(s)	170
PciSI	GCTCTTC	1 cut(s)	68
PcsI	WCGNNNNNNNCGW	2 cut(s)	125, 410
PctI	GAATGC	1 cut(s)	216
PfeI	GAWTC	1 cut(s)	430
PfoI	TCCNGGA	1 cut(s)	425
PkrI	GCNGC	2 cut(s)	6, 253
Ppu21I	YACGTR	1 cut(s)	405
PspN4I	GGNNCC	2 cut(s)	424, 443
RsaI	GTAC	1 cut(s)	443
RsaNI	GTAC	1 cut(s)	442
RseI	CAYNNNNRTG	1 cut(s)	170
SapI	GCTCTTC	1 cut(s)	68
SatI	GCNGC	2 cut(s)	5, 252
Sau3AI	GATC	4 cut(s)	151, 157, 240, 448
ScrFI	CCNGG	1 cut(s)	427
SduI	GDGCHC	1 cut(s)	410
SetI	ASST	7 cut(s)	63, 71, 345, 407, 416, 439, 447
SfaNI	GCATC	2 cut(s)	147, 384
SmiMI	CAYNNNNRTG	1 cut(s)	170
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
SsiI	CCGC	4 cut(s)	5, 25, 203, 348
StyD4I	CCNGG	1 cut(s)	425
TaaI	ACNGT	5 cut(s)	117, 169, 248, 331, 337
TaiI	ACGT	2 cut(s)	407, 416
TaqI	TCGA	2 cut(s)	156, 243
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	1 cut(s)	430
TscAI	CASTG	1 cut(s)	253
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	1 cut(s)	251
Tsp45I	GTSAC	1 cut(s)	331
TspRI	CASTG	1 cut(s)	253
VneI	GTGCAC	1 cut(s)	406
Zsp2I	ATGCAT	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.