Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009897.1

Orthogroup ID

OG0013543

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 334

Gene Structure 333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009897.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 232 bp

atgtcaatagcaccctcactccctcgtctacactctcctttcctatgttgcccgctcaagctttcttctacctctccttgtctttcccacaagttggctcaacgctcgcccaagttatatccatgcatcagagctgttgatcttgatcaaaacacggtagtggcaatctcagtagggctggtgagtgttgcggttgggataggcattccggttttctacgaatctcaaatcg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009765 GO:0009987 GO:0010206 GO:0015979 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0019538 GO:0019684 GO:0030091 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

77

Amino Acids

8.23

Weight (kDa)

8.86

Isoelectric Point (pI)

56.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013543)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75690
fragaria_vesca	FvH4_2g38630 FvH4_2g38630
malus_domestica	MD08G1014000.v1.1 MD15G1013500.v1.1
prunus_persica	Prupe.1G367000_v2.0.a1
pyrus_communis	pycom08g01270 pycom15g01170
rosa_chinensis	RchiOBHm_Chr6g0302691
rosa_laevigata	RLG00000011147
rosa_multiflora	Rmu_sc0009897.1_g000001
rosa_roxburghii	Rroxscaffold_7G00165430
rosa_rugosa	Rorug06G0316200
rosa_samantha	Rh6AG429600 Rh6BG473000 Rh6CG441900 Rh6DG428600
rosa_wichuraiana	Rw6G037180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	94
AccBSI	CCGCTC	1 cut(s)	55
AccI	GTMKAC	1 cut(s)	28
AciI	CCGC	2 cut(s)	53, 191
AfiI	CCNNNNNNNGG	1 cut(s)	94
AleI	CACNNNNGTG	1 cut(s)	158
AluBI	AGCT	2 cut(s)	61, 134
AluI	AGCT	2 cut(s)	61, 134
AsuHPI	GGTGA	1 cut(s)	193
BclI	TGATCA	1 cut(s)	145
BmsI	GCATC	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	41
BsaBI	GATNNNNATC	1 cut(s)	144
BsaWI	WCCGGW	1 cut(s)	208
BsaXI	ACNNNNNCTCC	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	1 cut(s)	94
Bse8I	GATNNNNATC	1 cut(s)	144
BseJI	GATNNNNATC	1 cut(s)	144
BseLI	CCNNNNNNNGG	1 cut(s)	94
BseMII	CTCAG	1 cut(s)	183
BsiSI	CCGG	1 cut(s)	209
BslI	CCNNNNNNNGG	1 cut(s)	94
BsmI	GAATGC	1 cut(s)	204
Bsp143I	GATC	2 cut(s)	139, 145
BspACI	CCGC	2 cut(s)	53, 191
BspCNI	CTCAG	1 cut(s)	182
BsrBI	CCGCTC	1 cut(s)	55
BssMI	GATC	2 cut(s)	139, 145
Bst4CI	ACNGT	1 cut(s)	157
BstC8I	GCNNGC	2 cut(s)	53, 107
BstDEI	CTNAG	1 cut(s)	169
BstKTI	GATC	2 cut(s)	142, 148
BstMBI	GATC	2 cut(s)	139, 145
Cac8I	GCNNGC	2 cut(s)	53, 107
CviAII	CATG	1 cut(s)	123
CviJI	RGCY	4 cut(s)	61, 98, 134, 178
CviKI_1	RGCY	4 cut(s)	61, 98, 134, 178
DdeI	CTNAG	1 cut(s)	169
DpnI	GATC	2 cut(s)	141, 147
DpnII	GATC	2 cut(s)	139, 145
EcoT22I	ATGCAT	1 cut(s)	128
FaeI	CATG	1 cut(s)	126
FaiI	YATR	3 cut(s)	46, 118, 124
FatI	CATG	1 cut(s)	122
FauI	CCCGC	1 cut(s)	60
FbaI	TGATCA	1 cut(s)	145
FblI	GTMKAC	1 cut(s)	28
HapII	CCGG	1 cut(s)	209
Hin1II	CATG	1 cut(s)	126
HindIII	AAGCTT	1 cut(s)	59
HinfI	GANTC	1 cut(s)	221
HpaII	CCGG	1 cut(s)	209
HphI	GGTGA	1 cut(s)	193
Hpy166II	GTNNAC	1 cut(s)	29
Hpy188I	TCNGA	1 cut(s)	131
Hpy188III	TCNNGA	1 cut(s)	143
Hpy8I	GTNNAC	1 cut(s)	29
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4V	TGCA	1 cut(s)	126
HpyF3I	CTNAG	1 cut(s)	169
Hsp92II	CATG	1 cut(s)	126
Ksp22I	TGATCA	1 cut(s)	145
Kzo9I	GATC	2 cut(s)	139, 145
LpnPI	CCDG	2 cut(s)	164, 222
LweI	GCATC	1 cut(s)	135
MalI	GATC	2 cut(s)	141, 147
MbiI	CCGCTC	1 cut(s)	55
MboI	GATC	2 cut(s)	139, 145
MboII	GAAGA	1 cut(s)	57
MnlI	CCTC	3 cut(s)	25, 33, 82
Mph1103I	ATGCAT	1 cut(s)	128
MslI	CAYNNNNRTG	1 cut(s)	158
MspI	CCGG	1 cut(s)	209
Mva1269I	GAATGC	1 cut(s)	204
NdeII	GATC	2 cut(s)	139, 145
NlaIII	CATG	1 cut(s)	126
NsiI	ATGCAT	1 cut(s)	128
OliI	CACNNNNGTG	1 cut(s)	158
PctI	GAATGC	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	221
PflMI	CCANNNNNTGG	1 cut(s)	94
RseI	CAYNNNNRTG	1 cut(s)	158
Sau3AI	GATC	2 cut(s)	139, 145
SetI	ASST	3 cut(s)	63, 74, 136
SfaNI	GCATC	1 cut(s)	135
SmiMI	CAYNNNNRTG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
SsiI	CCGC	2 cut(s)	53, 191
TaaI	ACNGT	1 cut(s)	157
TfiI	GAWTC	1 cut(s)	221
Van91I	CCANNNNNTGG	1 cut(s)	94
XmiI	GTMKAC	1 cut(s)	28
Zsp2I	ATGCAT	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.