Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004929

Physical Location & Seq

Genomic Coordinates Reverse (-)

46763509 .. 46766155

Gene Structure 2647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0316200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCGTTAGACCGAGCACTACAAGCAGCAAACTTCCTCACAAACCCCCAAATCCCCTCTATATCCCCAAACACAACCACCACCACCCACTACCACTTGGCCTTCGCGCGACGTCGTTTCAGCTTCAAATGCGCGGTGGAGTACAGCAGAGACCACTACAGCAGCAGCGTCCAAGTTCCGGTGGCGCATCCTAGACCGGCGGAGGTCCAGTGGAAGAAGGAGCTCTGTAATACGGTGCAACTCATCGGCGTCGTCGGTCTTCCCGTCGAAATTAAGCACCTTCCCTCCGGTAAAGTCCTCGCCTGGACCCGCCTCGCCGTCAAGAAATCCGCCACCGACACCTCATGGATCAATTTGACATTTTGGGATGAGCTAGCGCATGTTGCTTTTCAGCATTTAGAGAAAGGCCATCAGATATATGTTTCTGGAAGACTGATTTCAGATGCTGTCGAAACCAATGAGGGGAAACAGCAGACCTACTATAAGGTTGTTGTTCAGCAACTGAATTTTGTTGAAAAGAGCTCCCCAATGGCGAATGGTGGTCAGGACTCGGATTCCTTTACACCAGGCAAAAGTTCTAGCCACAGCTTTACAAAGCACACAGAAACCACACAAGAATTGTGGCAAGCATTCTTTGCTAATCCAGTAGAGTGGTGGGATAATAGGAAGACCAAGAGGAATTCAAAATATCCAGATTTTAAGCACAAAGACACCGGAGAAGCCTTGTGGATTGAAGGCCGGAACAATCCTCCATGGGTGAAGTCCCAACTTGCTATACTGGATACAAGAATGGGGACCGCTAATGATCAAGATCTTAAGACGCATTCAAACCTGTTTGCTGATGATAATTTTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006091 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009765 GO:0009987 GO:0010206 GO:0015979 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0019538 GO:0019684 GO:0030091 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

285

Amino Acids

32.45

Weight (kDa)

8.72

Isoelectric Point (pI)

35.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SSB	PF00436	77 - 170	6.8e-17	Single-strand binding protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19950 AT1G75700 AT1G75700 AT1G75700
fragaria_vesca	FvH4_2g38590 FvH4_2g38590
malus_domestica	MD02G1218000.v1.1 MD05G1114200.v1.1 MD08G1013900.v1.1 MD15G1013400.v1.1
prunus_persica	Prupe.1G366900_v2.0.a1 Prupe.8G158600_v2.0.a1 Prupe.8G158600_v2.0.a1 Prupe.8G158700_v2.0.a1 Prupe.8G158700_v2.0.a1
pyrus_communis	pycom08g01260 pycom10g10090 pycom15g01160
rosa_chinensis	RchiOBHm_Chr6g0302701
rosa_laevigata	RLG00000011146
rosa_multiflora	Rmu_sc0009897.1_g000003
rosa_roxburghii	Rroxscaffold_7G00165400
rosa_rugosa	Rorug06G0316200 Rorug06G0316300 Rorug06G0316400
rosa_samantha	Rh6AG429700 Rh6BG472900 Rh6CG442100 Rh6DG428800
rosa_wichuraiana	Rw6G037200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	115
AccII	CGCG	3 cut(s)	107, 109, 134
AciI	CCGC	5 cut(s)	134, 200, 310, 330, 798
AclWI	GGATC	1 cut(s)	356
AcsI	RAATTY	2 cut(s)	505, 679
AcyI	GRCGYC	2 cut(s)	112, 249
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	2 cut(s)	178, 462
AflII	CTTAAG	1 cut(s)	815
AgsI	TTSAA	5 cut(s)	127, 515, 684, 734, 828
AjnI	CCWGG	2 cut(s)	302, 565
AluBI	AGCT	5 cut(s)	123, 223, 373, 522, 588
AluI	AGCT	5 cut(s)	123, 223, 373, 522, 588
Alw21I	GWGCWC	3 cut(s)	19, 225, 524
Alw26I	GTCTC	1 cut(s)	144
AlwI	GGATC	1 cut(s)	356
AlwNI	CAGNNNCTG	2 cut(s)	446, 502
AoxI	GGCC	3 cut(s)	99, 406, 736
ApeKI	GCWGC	3 cut(s)	26, 162, 165
ApoI	RAATTY	2 cut(s)	505, 679
AspLEI	GCGC	4 cut(s)	109, 134, 187, 379
AspS9I	GGNCC	3 cut(s)	205, 306, 795
AsuHPI	GGTGA	1 cut(s)	769
AsuNHI	GCTAGC	1 cut(s)	373
AvaII	GGWCC	3 cut(s)	205, 306, 795
BanII	GRGCYC	2 cut(s)	225, 524
BbsI	GAAGAC	3 cut(s)	251, 436, 674
Bbv12I	GWGCWC	3 cut(s)	19, 225, 524
BbvI	GCAGC	3 cut(s)	38, 174, 177
BccI	CCATC	1 cut(s)	417
BceAI	ACGGC	1 cut(s)	302
BciT130I	CCWGG	2 cut(s)	304, 567
BciVI	GTATCC	1 cut(s)	775
BclI	TGATCA	1 cut(s)	805
BcoDI	GTCTC	1 cut(s)	144
BfaI	CTAG	3 cut(s)	192, 374, 579
BfmI	CTRYAG	1 cut(s)	157
BfrI	CTTAAG	1 cut(s)	815
BfuI	GTATCC	1 cut(s)	775
BglII	AGATCT	1 cut(s)	811
BisI	GCNGC	3 cut(s)	27, 163, 166
BlsI	GCNGC	3 cut(s)	28, 164, 167
Bme1390I	CCNGG	2 cut(s)	304, 567
Bme18I	GGWCC	3 cut(s)	205, 306, 795
BmgT120I	GGNCC	3 cut(s)	205, 306, 795
BmiI	GGNNCC	2 cut(s)	308, 796
BmrFI	CCNGG	2 cut(s)	304, 567
BmsI	GCATC	2 cut(s)	196, 433
BmtI	GCTAGC	1 cut(s)	377
BpiI	GAAGAC	3 cut(s)	251, 436, 674
BsaBI	GATNNNNATC	1 cut(s)	810
BsaHI	GRCGYC	2 cut(s)	112, 249
BsaI	GGTCTC	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	752
BsaWI	WCCGGW	3 cut(s)	178, 287, 713
BsaXI	ACNNNNNCTCC	4 cut(s)	194, 224, 269, 299
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 462
Bse118I	RCCGGY	1 cut(s)	196
Bse1I	ACTGG	3 cut(s)	208, 644, 783
Bse8I	GATNNNNATC	1 cut(s)	810
BseBI	CCWGG	2 cut(s)	304, 567
BseDI	CCNNGG	1 cut(s)	752
BseGI	GGATG	2 cut(s)	187, 373
BseJI	GATNNNNATC	1 cut(s)	810
BseLI	CCNNNNNNNGG	2 cut(s)	178, 462
BseNI	ACTGG	3 cut(s)	208, 644, 783
BseXI	GCAGC	3 cut(s)	38, 174, 177
Bsh1236I	CGCG	3 cut(s)	107, 109, 134
BshFI	GGCC	3 cut(s)	101, 408, 738
BsiHKAI	GWGCWC	3 cut(s)	19, 225, 524
BsiSI	CCGG	5 cut(s)	179, 197, 288, 714, 739
BslFI	GGGAC	2 cut(s)	748, 808
BslI	CCNNNNNNNGG	2 cut(s)	178, 462
BsmAI	GTCTC	1 cut(s)	144
BsmFI	GGGAC	2 cut(s)	748, 808
BsmI	GAATGC	2 cut(s)	629, 823
BsnI	GGCC	3 cut(s)	101, 408, 738
Bso31I	GGTCTC	1 cut(s)	144
Bsp1286I	GDGCHC	3 cut(s)	19, 225, 524
Bsp143I	GATC	3 cut(s)	348, 805, 811
Bsp19I	CCATGG	1 cut(s)	752
BspACI	CCGC	5 cut(s)	134, 200, 310, 330, 798
BspANI	GGCC	3 cut(s)	101, 408, 738
BspFNI	CGCG	3 cut(s)	107, 109, 134
BspLI	GGNNCC	2 cut(s)	308, 796
BspOI	GCTAGC	1 cut(s)	377
BspPI	GGATC	1 cut(s)	356
BspTI	CTTAAG	1 cut(s)	815
BspTNI	GGTCTC	1 cut(s)	144
BsrFI	RCCGGY	1 cut(s)	196
BsrI	ACTGG	3 cut(s)	208, 644, 783
BssAI	RCCGGY	1 cut(s)	196
BssECI	CCNNGG	1 cut(s)	752
BssMI	GATC	3 cut(s)	348, 805, 811
BssNI	GRCGYC	2 cut(s)	112, 249
BssT1I	CCWWGG	1 cut(s)	752
Bst2UI	CCWGG	2 cut(s)	304, 567
Bst4CI	ACNGT	1 cut(s)	235
BstACI	GRCGYC	2 cut(s)	112, 249
BstAFI	CTTAAG	1 cut(s)	815
BstAPI	GCANNNNNTGC	1 cut(s)	635
BstC8I	GCNNGC	2 cut(s)	375, 627
BstDSI	CCRYGG	1 cut(s)	752
BstF5I	GGATG	2 cut(s)	187, 373
BstFNI	CGCG	3 cut(s)	107, 109, 134
BstHHI	GCGC	4 cut(s)	109, 134, 187, 379
BstKTI	GATC	3 cut(s)	351, 808, 814
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	3 cut(s)	348, 805, 811
BstMWI	GCNNNNNNNGC	4 cut(s)	23, 129, 383, 635
BstNI	CCWGG	2 cut(s)	304, 567
BstNSI	RCATGY	1 cut(s)	383
BstSCI	CCNGG	2 cut(s)	302, 565
BstSFI	CTRYAG	1 cut(s)	157
BstUI	CGCG	3 cut(s)	107, 109, 134
BstV1I	GCAGC	3 cut(s)	38, 174, 177
BstV2I	GAAGAC	3 cut(s)	251, 436, 674
BstX2I	RGATCY	1 cut(s)	811
BstXI	CCANNNNNNTGG	1 cut(s)	651
BstYI	RGATCY	1 cut(s)	811
BsuI	GTATCC	1 cut(s)	775
BsuRI	GGCC	3 cut(s)	101, 408, 738
BtgI	CCRYGG	1 cut(s)	752
BtsCI	GGATG	2 cut(s)	187, 373
BtsIMutI	CAGTG	1 cut(s)	215
Cac8I	GCNNGC	2 cut(s)	375, 627
CaiI	CAGNNNCTG	2 cut(s)	446, 502
CfoI	GCGC	4 cut(s)	109, 134, 187, 379
Cfr10I	RCCGGY	1 cut(s)	196
Cfr13I	GGNCC	3 cut(s)	205, 306, 795
CseI	GACGC	3 cut(s)	157, 238, 829
Csp6I	GTAC	1 cut(s)	142
CspCI	CAANNNNNGTGG	2 cut(s)	602, 637
CviAII	CATG	3 cut(s)	345, 380, 753
CviQI	GTAC	1 cut(s)	142
DpnI	GATC	3 cut(s)	350, 807, 813
DpnII	GATC	3 cut(s)	348, 805, 811
EciI	GGCGGA	2 cut(s)	215, 319
Ecl136II	GAGCTC	2 cut(s)	223, 522
Eco130I	CCWWGG	1 cut(s)	752
Eco24I	GRGCYC	2 cut(s)	225, 524
Eco31I	GGTCTC	1 cut(s)	144
Eco47I	GGWCC	3 cut(s)	205, 306, 795
Eco53kI	GAGCTC	2 cut(s)	223, 522
EcoICRI	GAGCTC	2 cut(s)	223, 522
EcoRI	GAATTC	1 cut(s)	679
EcoRII	CCWGG	2 cut(s)	302, 565
EcoT14I	CCWWGG	1 cut(s)	752
EcoT38I	GRGCYC	2 cut(s)	225, 524
ErhI	CCWWGG	1 cut(s)	752
FaeI	CATG	3 cut(s)	348, 383, 756
FaiI	YATR	8 cut(s)	62, 346, 381, 418, 420, 483, 754, 776
FaqI	GGGAC	2 cut(s)	748, 808
FatI	CATG	3 cut(s)	344, 379, 752
FauI	CCCGC	1 cut(s)	317
FbaI	TGATCA	1 cut(s)	805
Fnu4HI	GCNGC	3 cut(s)	27, 163, 166
FokI	GGATG	2 cut(s)	174, 380
FriOI	GRGCYC	2 cut(s)	225, 524
Fsp4HI	GCNGC	3 cut(s)	27, 163, 166
FspBI	CTAG	3 cut(s)	192, 374, 579
GlaI	GCGC	4 cut(s)	108, 133, 186, 378
GluI	GCNGC	3 cut(s)	27, 163, 166
HaeIII	GGCC	3 cut(s)	101, 408, 738
HapII	CCGG	5 cut(s)	179, 197, 288, 714, 739
HgaI	GACGC	3 cut(s)	157, 238, 829
HhaI	GCGC	4 cut(s)	109, 134, 187, 379
Hin1I	GRCGYC	2 cut(s)	112, 249
Hin1II	CATG	3 cut(s)	348, 383, 756
Hin6I	GCGC	4 cut(s)	107, 132, 185, 377
HinP1I	GCGC	4 cut(s)	107, 132, 185, 377
HinfI	GANTC	2 cut(s)	548, 554
HpaII	CCGG	5 cut(s)	179, 197, 288, 714, 739
HphI	GGTGA	1 cut(s)	769
Hpy188I	TCNGA	3 cut(s)	414, 442, 553
Hpy188III	TCNNGA	5 cut(s)	322, 426, 545, 692, 809
Hpy99I	CGWCG	5 cut(s)	114, 117, 254, 257, 269
HpyAV	CCTTC	4 cut(s)	112, 211, 290, 728
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4IV	ACGT	1 cut(s)	112
HpyCH4V	TGCA	1 cut(s)	238
HpyF10VI	GCNNNNNNNGC	4 cut(s)	23, 129, 383, 635
HpySE526I	ACGT	1 cut(s)	112
Hsp92I	GRCGYC	2 cut(s)	112, 249
Hsp92II	CATG	3 cut(s)	348, 383, 756
HspAI	GCGC	4 cut(s)	107, 132, 185, 377
Ksp22I	TGATCA	1 cut(s)	805
Kzo9I	GATC	3 cut(s)	348, 805, 811
LmnI	GCTCC	2 cut(s)	220, 527
Lsp1109I	GCAGC	3 cut(s)	38, 174, 177
LweI	GCATC	2 cut(s)	196, 433
MaeI	CTAG	3 cut(s)	192, 374, 579
MaeII	ACGT	1 cut(s)	112
MalI	GATC	3 cut(s)	350, 807, 813
MboI	GATC	3 cut(s)	348, 805, 811
MboII	GAAGA	4 cut(s)	226, 251, 441, 679
MflI	RGATCY	1 cut(s)	811
MhlI	GDGCHC	3 cut(s)	19, 225, 524
MluCI	AATT	6 cut(s)	270, 352, 505, 617, 679, 847
MlyI	GAGTC	1 cut(s)	542
MseI	TTAA	3 cut(s)	273, 699, 816
MspCI	CTTAAG	1 cut(s)	815
MspI	CCGG	5 cut(s)	179, 197, 288, 714, 739
MspR9I	CCNGG	2 cut(s)	304, 567
Mva1269I	GAATGC	2 cut(s)	629, 823
MvaI	CCWGG	2 cut(s)	304, 567
MvnI	CGCG	3 cut(s)	107, 109, 134
MwoI	GCNNNNNNNGC	4 cut(s)	23, 129, 383, 635
NcoI	CCATGG	1 cut(s)	752
NdeII	GATC	3 cut(s)	348, 805, 811
NheI	GCTAGC	1 cut(s)	373
NlaIII	CATG	3 cut(s)	348, 383, 756
NlaIV	GGNNCC	2 cut(s)	308, 796
NspI	RCATGY	1 cut(s)	383
PcsI	WCGNNNNNNNCGW	1 cut(s)	261
PctI	GAATGC	2 cut(s)	629, 823
PfeI	GAWTC	1 cut(s)	554
PkrI	GCNGC	3 cut(s)	28, 164, 167
PleI	GAGTC	1 cut(s)	542
PpsI	GAGTC	1 cut(s)	542
Psp124BI	GAGCTC	2 cut(s)	225, 524
Psp6I	CCWGG	2 cut(s)	302, 565
PspGI	CCWGG	2 cut(s)	302, 565
PspN4I	GGNNCC	2 cut(s)	308, 796
PspPI	GGNCC	3 cut(s)	205, 306, 795
PstNI	CAGNNNCTG	2 cut(s)	446, 502
PsuI	RGATCY	1 cut(s)	811
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
SacI	GAGCTC	2 cut(s)	225, 524
SaqAI	TTAA	3 cut(s)	273, 699, 816
SatI	GCNGC	3 cut(s)	27, 163, 166
Sau3AI	GATC	3 cut(s)	348, 805, 811
Sau96I	GGNCC	3 cut(s)	205, 306, 795
SchI	GAGTC	1 cut(s)	542
ScrFI	CCNGG	2 cut(s)	304, 567
SduI	GDGCHC	3 cut(s)	19, 225, 524
SfaNI	GCATC	2 cut(s)	196, 433
SfcI	CTRYAG	1 cut(s)	157
SinI	GGWCC	3 cut(s)	205, 306, 795
SmlI	CTYRAG	1 cut(s)	815
SmoI	CTYRAG	1 cut(s)	815
Sse9I	AATT	6 cut(s)	270, 352, 505, 617, 679, 847
SsiI	CCGC	5 cut(s)	134, 200, 310, 330, 798
SspMI	CTAG	3 cut(s)	192, 374, 579
SstI	GAGCTC	2 cut(s)	225, 524
StyD4I	CCNGG	2 cut(s)	302, 565
StyI	CCWWGG	1 cut(s)	752
TaaI	ACNGT	1 cut(s)	235
TaiI	ACGT	1 cut(s)	115
TaqI	TCGA	2 cut(s)	267, 450
TaqII	GACCGA	2 cut(s)	27, 245
TasI	AATT	6 cut(s)	270, 352, 505, 617, 679, 847
TatI	WGTACW	1 cut(s)	141
TfiI	GAWTC	1 cut(s)	554
Tru1I	TTAA	3 cut(s)	273, 699, 816
Tru9I	TTAA	3 cut(s)	273, 699, 816
TscAI	CASTG	1 cut(s)	215
TseI	GCWGC	3 cut(s)	26, 162, 165
TspRI	CASTG	1 cut(s)	215
Vha464I	CTTAAG	1 cut(s)	815
VpaK11BI	GGWCC	3 cut(s)	205, 306, 795
XapI	RAATTY	2 cut(s)	505, 679
XceI	RCATGY	1 cut(s)	383
XcmI	CCANNNNNNNNNTGG	1 cut(s)	651
XspI	CTAG	3 cut(s)	192, 374, 579
ZraI	GACGTC	1 cut(s)	113

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.