Prupe.1G366900_v2.0.a1

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0004929
Physical Location & Seq
Forward (+)
33606657 .. 33608673
2017 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G366900.1

Sequence Viewer

Length: 876 bp
ATGATAGGATCCTTTCTTACCAGAGGACTTGTGATGGTTCTTGGCTATGCTTATCCAGCTTACGAGTGCTACAAAACTGTTGAAAAGAACAAGCCAGAGATTGAACAACTTCGTTTTTGGTGCCAGTATTGGATTTTGGTGGCTGTTTTGACTGTATGTGAGAGAATTGGCGATGCTTTTGTTTCATGGGTTCCAATGTATAGTGAAGCTAAGTTGCTCTTCATTATATATCTGTGGTTTCCTAAAACAAAGGGAACGACCTATGTGTACGATTCCTTCTTTAGACCATATCTTGCAAAGCATGAGAATGAAATTGATAGGAACTTGCTGGAATTAAGAACCAGAGCGGGTGACATTGCAGTTGTGTATTGGCAAAGAGCTGCAAGCTATGGTCAGACGAGAATATTTGATATTTTGCAGTATGTTGCTGCACAGTCGACACCAAGGCCTCGCCCTGCTCAGCCACAACAAGGTGTTAGGGCTCGTCAACCCCCTGCTGCTCGCCAACCCCCTCCATCTCCAAATCAACAACCGGCTGCTAAAACACAATTGCAACCTGAAGAACCGCCATCTCCCACTTCTAGTACTACTTCAAGTAAGGACCAAAGGGAGATAGCCGAAGCATTAGCTCCTTCAACAAAGCCTAAAGCCGCCCCCCAAGCAGCAGTTTCAAATACTCAAAAAGCGACAGCAGCTGCATCTGAATCCGCTAGCCAATCTGTCCCAGCTGAGGAGGTTGAACCAATGCAGACTGAAGCAGTGGCATCCTCTTCATCGACTGAAGATACAAACCCTCCCCAAAAAGAGACAGTCATGGAGGAAAGCATTCGGGTTACACGTGCAAGGTTGAGGAAAGCTCGTTCTGCAGGCCGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

292

Amino Acids

32.52

Weight (kDa)

9.14

Isoelectric Point (pI)

62.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 120
AccBSI CCGCTC 1 cut(s) 347
AccI GTMKAC 1 cut(s) 437
AciI CCGC 5 cut(s) 347, 566, 651, 708, 871
AclWI GGATC 2 cut(s) 3, 16
AcuI CTGAAG 3 cut(s) 579, 774, 801
AcvI CACGTG 1 cut(s) 839
AfaI GTAC 2 cut(s) 269, 586
AfiI CCNNNNNNNGG 2 cut(s) 470, 730
AflIII ACRYGT 1 cut(s) 836
AgsI TTSAA 6 cut(s) 83, 104, 594, 636, 672, 740
AloI GAACNNNNNNTCC 2 cut(s) 844, 876
AluBI AGCT 8 cut(s) 59, 209, 380, 387, 629, 695, 728, 857
AluI AGCT 8 cut(s) 59, 209, 380, 387, 629, 695, 728, 857
Alw26I GTCTC 1 cut(s) 800
AlwI GGATC 2 cut(s) 3, 16
AlwNI CAGNNNCTG 1 cut(s) 695
AoxI GGCC 2 cut(s) 446, 868
ApeKI GCWGC 7 cut(s) 380, 428, 497, 536, 662, 692, 695
Asp700I GAANNNNTTC 2 cut(s) 108, 825
AspS9I GGNCC 1 cut(s) 601
AsuHPI GGTGA 1 cut(s) 362
AsuNHI GCTAGC 1 cut(s) 710
AvaII GGWCC 1 cut(s) 601
BamHI GGATCC 1 cut(s) 8
BanI GGYRCC 1 cut(s) 120
BanII GRGCYC 1 cut(s) 484
BarI GAAGNNNNNNTAC 2 cut(s) 260, 292
BbrPI CACGTG 1 cut(s) 839
BbvCI CCTCAGC 1 cut(s) 729
BbvI GCAGC 7 cut(s) 367, 415, 484, 523, 674, 682, 704
BccI CCATC 3 cut(s) 28, 523, 577
BcoDI GTCTC 1 cut(s) 800
BfaI CTAG 2 cut(s) 582, 711
BfmI CTRYAG 1 cut(s) 864
BisI GCNGC 9 cut(s) 381, 429, 498, 537, 651, 663, 693, 696, 871
BlpI GCTNAGC 1 cut(s) 459
BlsI GCNGC 9 cut(s) 382, 430, 499, 538, 652, 664, 694, 697, 872
BmcAI AGTACT 1 cut(s) 586
Bme18I GGWCC 1 cut(s) 601
BmgT120I GGNCC 1 cut(s) 601
BmiI GGNNCC 3 cut(s) 10, 122, 192
BmsI GCATC 3 cut(s) 163, 707, 773
BmtI GCTAGC 1 cut(s) 714
BplI GAGNNNNNCTC 2 cut(s) 841, 873
Bpu10I CCTNAGC 1 cut(s) 729
Bpu1102I GCTNAGC 1 cut(s) 459
BsaAI YACGTR 1 cut(s) 839
BsaJI CCNNGG 1 cut(s) 443
BsaXI ACNNNNNCTCC 2 cut(s) 778, 808
Bsc4I CCNNNNNNNGG 2 cut(s) 470, 730
Bse118I RCCGGY 1 cut(s) 532
Bse1I ACTGG 1 cut(s) 124
Bse3DI GCAATG 1 cut(s) 354
BseDI CCNNGG 1 cut(s) 443
BseGI GGATG 1 cut(s) 764
BseLI CCNNNNNNNGG 2 cut(s) 470, 730
BseMI GCAATG 1 cut(s) 354
BseMII CTCAG 2 cut(s) 473, 720
BseNI ACTGG 1 cut(s) 124
BseRI GAGGAG 1 cut(s) 746
BseXI GCAGC 7 cut(s) 367, 415, 484, 523, 674, 682, 704
BseYI CCCAGC 1 cut(s) 724
BsgI GTGCAG 1 cut(s) 414
BshFI GGCC 2 cut(s) 448, 870
BshNI GGYRCC 1 cut(s) 120
BsiSI CCGG 1 cut(s) 533
BslFI GGGAC 1 cut(s) 707
BslI CCNNNNNNNGG 2 cut(s) 470, 730
BsmAI GTCTC 1 cut(s) 800
BsmFI GGGAC 1 cut(s) 707
BsmI GAATGC 1 cut(s) 825
BsnI GGCC 2 cut(s) 448, 870
Bsp1286I GDGCHC 1 cut(s) 484
Bsp143I GATC 1 cut(s) 8
Bsp1720I GCTNAGC 1 cut(s) 459
BspACI CCGC 5 cut(s) 347, 566, 651, 708, 871
BspANI GGCC 2 cut(s) 448, 870
BspCNI CTCAG 2 cut(s) 472, 721
BspLI GGNNCC 3 cut(s) 10, 122, 192
BspMAI CTGCAG 1 cut(s) 868
BspOI GCTAGC 1 cut(s) 714
BspPI GGATC 2 cut(s) 3, 16
BspQI GCTCTTC 1 cut(s) 224
BspT107I GGYRCC 1 cut(s) 120
BsrBI CCGCTC 1 cut(s) 347
BsrDI GCAATG 1 cut(s) 354
BsrFI RCCGGY 1 cut(s) 532
BsrI ACTGG 1 cut(s) 124
BssAI RCCGGY 1 cut(s) 532
BssECI CCNNGG 1 cut(s) 443
BssMI GATC 1 cut(s) 8
BssT1I CCWWGG 1 cut(s) 443
Bst4CI ACNGT 4 cut(s) 79, 154, 435, 811
Bst6I CTCTTC 2 cut(s) 224, 775
BstBAI YACGTR 1 cut(s) 839
BstC8I GCNNGC 4 cut(s) 385, 502, 712, 868
BstDEI CTNAG 3 cut(s) 210, 459, 729
BstF5I GGATG 1 cut(s) 764
BstKTI GATC 1 cut(s) 11
BstMAI GTCTC 1 cut(s) 800
BstMBI GATC 1 cut(s) 8
BstMWI GCNNNNNNNGC 4 cut(s) 56, 659, 692, 863
BstSFI CTRYAG 1 cut(s) 864
BstV1I GCAGC 7 cut(s) 367, 415, 484, 523, 674, 682, 704
BstX2I RGATCY 1 cut(s) 8
BstYI RGATCY 1 cut(s) 8
BsuRI GGCC 2 cut(s) 448, 870
BtgZI GCGATG 1 cut(s) 186
BtsCI GGATG 1 cut(s) 764
BtsI GCAGTG 1 cut(s) 765
BtsIMutI CAGTG 1 cut(s) 765
Cac8I GCNNGC 4 cut(s) 385, 502, 712, 868
CaiI CAGNNNCTG 1 cut(s) 695
Cfr10I RCCGGY 1 cut(s) 532
Cfr13I GGNCC 1 cut(s) 601
Csp6I GTAC 2 cut(s) 268, 585
CviAII CATG 3 cut(s) 186, 302, 814
CviQI GTAC 2 cut(s) 268, 585
DdeI CTNAG 3 cut(s) 210, 459, 729
DpnI GATC 1 cut(s) 10
DpnII GATC 1 cut(s) 8
Eam1104I CTCTTC 2 cut(s) 224, 775
EarI CTCTTC 2 cut(s) 224, 775
Eco130I CCWWGG 1 cut(s) 443
Eco147I AGGCCT 1 cut(s) 448
Eco24I GRGCYC 1 cut(s) 484
Eco47I GGWCC 1 cut(s) 601
Eco57I CTGAAG 3 cut(s) 579, 774, 801
Eco72I CACGTG 1 cut(s) 839
EcoT14I CCWWGG 1 cut(s) 443
EcoT38I GRGCYC 1 cut(s) 484
ErhI CCWWGG 1 cut(s) 443
FaeI CATG 3 cut(s) 189, 305, 817
FalI AAGNNNNNCTT 2 cut(s) 203, 235
FaqI GGGAC 1 cut(s) 707
FatI CATG 3 cut(s) 185, 301, 813
FauI CCCGC 1 cut(s) 340
FblI GTMKAC 1 cut(s) 437
Fnu4HI GCNGC 9 cut(s) 381, 429, 498, 537, 651, 663, 693, 696, 871
FokI GGATG 1 cut(s) 751
FriOI GRGCYC 1 cut(s) 484
Fsp4HI GCNGC 9 cut(s) 381, 429, 498, 537, 651, 663, 693, 696, 871
FspBI CTAG 2 cut(s) 582, 711
GluI GCNGC 9 cut(s) 381, 429, 498, 537, 651, 663, 693, 696, 871
GsaI CCCAGC 1 cut(s) 728
HaeIII GGCC 2 cut(s) 448, 870
HapII CCGG 1 cut(s) 533
Hin1II CATG 3 cut(s) 189, 305, 817
HincII GTYRAC 2 cut(s) 438, 488
HindII GTYRAC 2 cut(s) 438, 488
HinfI GANTC 2 cut(s) 272, 704
HpaII CCGG 1 cut(s) 533
HphI GGTGA 1 cut(s) 362
Hpy166II GTNNAC 3 cut(s) 268, 438, 488
Hpy188I TCNGA 2 cut(s) 396, 703
Hpy8I GTNNAC 3 cut(s) 268, 438, 488
HpyAV CCTTC 2 cut(s) 286, 642
HpyCH4III ACNGT 4 cut(s) 79, 154, 435, 811
HpyCH4IV ACGT 1 cut(s) 838
HpyF10VI GCNNNNNNNGC 4 cut(s) 56, 659, 692, 863
HpyF3I CTNAG 3 cut(s) 210, 459, 729
HpySE526I ACGT 1 cut(s) 838
Hsp92II CATG 3 cut(s) 189, 305, 817
Kzo9I GATC 1 cut(s) 8
LguI GCTCTTC 1 cut(s) 224
LmnI GCTCC 1 cut(s) 634
Lsp1109I GCAGC 7 cut(s) 367, 415, 484, 523, 674, 682, 704
LweI GCATC 3 cut(s) 163, 707, 773
MaeI CTAG 2 cut(s) 582, 711
MaeII ACGT 1 cut(s) 838
MaeIII GTNAC 2 cut(s) 350, 832
MalI GATC 1 cut(s) 10
MbiI CCGCTC 1 cut(s) 347
MboI GATC 1 cut(s) 8
MboII GAAGA 4 cut(s) 211, 572, 762, 794
MfeI CAATTG 1 cut(s) 548
MflI RGATCY 1 cut(s) 8
MhlI GDGCHC 1 cut(s) 484
MluCI AATT 4 cut(s) 165, 312, 332, 548
MnlI CCTC 9 cut(s) 17, 459, 522, 724, 727, 778, 804, 811, 843
MroXI GAANNNNTTC 2 cut(s) 108, 825
MseI TTAA 1 cut(s) 335
MslI CAYNNNNRTG 1 cut(s) 306
MspA1I CMGCKG 3 cut(s) 695, 728, 873
MspI CCGG 1 cut(s) 533
MunI CAATTG 1 cut(s) 548
Mva1269I GAATGC 1 cut(s) 825
MwoI GCNNNNNNNGC 4 cut(s) 56, 659, 692, 863
NdeII GATC 1 cut(s) 8
NheI GCTAGC 1 cut(s) 710
NlaIII CATG 3 cut(s) 189, 305, 817
NlaIV GGNNCC 3 cut(s) 10, 122, 192
NmuCI GTSAC 1 cut(s) 350
PceI AGGCCT 1 cut(s) 448
PciSI GCTCTTC 1 cut(s) 224
PcsI WCGNNNNNNNCGW 1 cut(s) 835
PctI GAATGC 1 cut(s) 825
PdmI GAANNNNTTC 2 cut(s) 108, 825
PfeI GAWTC 2 cut(s) 272, 704
PkrI GCNGC 9 cut(s) 382, 430, 499, 538, 652, 664, 694, 697, 872
PmaCI CACGTG 1 cut(s) 839
PmlI CACGTG 1 cut(s) 839
Ppu21I YACGTR 1 cut(s) 839
PspCI CACGTG 1 cut(s) 839
PspFI CCCAGC 1 cut(s) 724
PspN4I GGNNCC 3 cut(s) 10, 122, 192
PspPI GGNCC 1 cut(s) 601
PstI CTGCAG 1 cut(s) 868
PstNI CAGNNNCTG 1 cut(s) 695
PsuI RGATCY 1 cut(s) 8
PvuII CAGCTG 2 cut(s) 695, 728
RsaI GTAC 2 cut(s) 269, 586
RsaNI GTAC 2 cut(s) 268, 585
RseI CAYNNNNRTG 1 cut(s) 306
SalI GTCGAC 1 cut(s) 436
SapI GCTCTTC 1 cut(s) 224
SaqAI TTAA 1 cut(s) 335
SatI GCNGC 9 cut(s) 381, 429, 498, 537, 651, 663, 693, 696, 871
Sau3AI GATC 1 cut(s) 8
Sau96I GGNCC 1 cut(s) 601
ScaI AGTACT 1 cut(s) 586
SduI GDGCHC 1 cut(s) 484
SfaNI GCATC 3 cut(s) 163, 707, 773
SfcI CTRYAG 1 cut(s) 864
SinI GGWCC 1 cut(s) 601
SmiMI CAYNNNNRTG 1 cut(s) 306
Sse9I AATT 4 cut(s) 165, 312, 332, 548
SseBI AGGCCT 1 cut(s) 448
SsiI CCGC 5 cut(s) 347, 566, 651, 708, 871
SspI AATATT 1 cut(s) 405
SspMI CTAG 2 cut(s) 582, 711
StuI AGGCCT 1 cut(s) 448
StyI CCWWGG 1 cut(s) 443
TaaI ACNGT 4 cut(s) 79, 154, 435, 811
TaiI ACGT 1 cut(s) 841
TaqI TCGA 2 cut(s) 437, 776
TasI AATT 4 cut(s) 165, 312, 332, 548
TatI WGTACW 1 cut(s) 584
TauI GCSGC 2 cut(s) 653, 873
TfiI GAWTC 2 cut(s) 272, 704
Tru1I TTAA 1 cut(s) 335
Tru9I TTAA 1 cut(s) 335
TscAI CASTG 1 cut(s) 765
TseFI GTSAC 1 cut(s) 350
TseI GCWGC 7 cut(s) 380, 428, 497, 536, 662, 692, 695
Tsp45I GTSAC 1 cut(s) 350
TspDTI ATGAA 4 cut(s) 174, 211, 324, 762
TspRI CASTG 1 cut(s) 765
VpaK11BI GGWCC 1 cut(s) 601
XmiI GTMKAC 1 cut(s) 437
XmnI GAANNNNTTC 2 cut(s) 108, 825
XspI CTAG 2 cut(s) 582, 711
ZrmI AGTACT 1 cut(s) 586
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.