RLG00000011146

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0004929
Physical Location & Seq
Reverse (-)
7092479 .. 7095321
2843 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011146

Sequence Viewer

Length: 687 bp
ATGTATAGTGAAGCTAAGTTGCTCTTCATCATATATCTGTGGTTTCCTAAAACAAAGGGAACAACTTATGTGTACGATTCCTTCTTTAGACCATATCTTGCAAAGCATGAGAATGATATTGATAGGAACTTGTTGGAACTAAGAACTAGGGCTGGCGATGTCGCTATTTTATATTGGCAAAGAGCTGCAAGCTATGGTCAGACAAGAGTATTTGATATTTTGCAGTATGTTGCTGCTCAATCAACACCAAGGCCTCGCCCTGTTCAGCCACAACCAGGTGTTAGGGGTCGCCAACCCCCTGCTACTCGCCAGCCTGCTCCAGCTCCAAATCGCCAACCAGCTACAACAACGCAATCCCAACCCGAAGAACCACCATCTCCCACTTCCAGTACATCTTCTAGTAAGGACCAAAGAGAGATAGCAGAAGCGTTGGCTCCTTTACCAAAGCCTAAAGCTGCCCCTCAAGCAGCAGGTTCCAATACTCAAAAAGCACCAGCTCCACCTGAATCATCTGGCCAATCTACACCAACTGAAGAGGTGGAGGCAATGCAGACTGAAGCAGTGACATCCTCTGCAGCAACTGAAAATACAAATCCGCCCCCAAAAGATACACTAATGGAAGGTACCAGTCGGCAAACACGAGCATCTTTAAGGAAAACCCGTTCTGCATCTGCAGCAAACCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

229

Amino Acids

24.98

Weight (kDa)

9.69

Isoelectric Point (pI)

66.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 1 - 32 5.7e-08 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 461
Acc65I GGTACC 1 cut(s) 623
AccB1I GGYRCC 1 cut(s) 623
AciI CCGC 1 cut(s) 596
AcoI YGGCCR 1 cut(s) 514
AcuI CTGAAG 2 cut(s) 552, 576
AfaI GTAC 3 cut(s) 74, 391, 625
AfiI CCNNNNNNNGG 1 cut(s) 275
AjnI CCWGG 1 cut(s) 274
AloI GAACNNNNNNTCC 2 cut(s) 646, 678
AluBI AGCT 7 cut(s) 14, 185, 192, 323, 341, 455, 497
AluI AGCT 7 cut(s) 14, 185, 192, 323, 341, 455, 497
AlwNI CAGNNNCTG 1 cut(s) 581
AoxI GGCC 2 cut(s) 251, 514
ApeKI GCWGC 6 cut(s) 185, 233, 455, 467, 575, 674
Asp718I GGTACC 1 cut(s) 623
AspS9I GGNCC 1 cut(s) 406
AvaII GGWCC 1 cut(s) 406
BalI TGGCCA 1 cut(s) 516
BanI GGYRCC 1 cut(s) 623
BarI GAAGNNNNNNTAC 2 cut(s) 65, 97
BauI CACGAG 1 cut(s) 639
BbvI GCAGC 5 cut(s) 172, 220, 442, 479, 587
BccI CCATC 1 cut(s) 382
BciT130I CCWGG 1 cut(s) 276
BfaI CTAG 2 cut(s) 147, 399
BfmI CTRYAG 2 cut(s) 573, 672
BfuAI ACCTGC 1 cut(s) 461
BisI GCNGC 6 cut(s) 186, 234, 456, 468, 576, 675
BlsI GCNGC 6 cut(s) 187, 235, 457, 469, 577, 676
Bme1390I CCNGG 1 cut(s) 276
Bme18I GGWCC 1 cut(s) 406
BmgT120I GGNCC 1 cut(s) 406
BmiI GGNNCC 3 cut(s) 435, 475, 625
BmrFI CCNGG 1 cut(s) 276
BmsI GCATC 2 cut(s) 653, 677
BpmI CTGGAG 1 cut(s) 303
BpuEI CTTGAG 1 cut(s) 447
BsaJI CCNNGG 1 cut(s) 248
Bsc4I CCNNNNNNNGG 1 cut(s) 275
Bse1I ACTGG 2 cut(s) 387, 627
Bse3DI GCAATG 1 cut(s) 552
BseBI CCWGG 1 cut(s) 276
BseDI CCNNGG 1 cut(s) 248
BseGI GGATG 1 cut(s) 566
BseLI CCNNNNNNNGG 1 cut(s) 275
BseMI GCAATG 1 cut(s) 552
BseNI ACTGG 2 cut(s) 387, 627
BseXI GCAGC 5 cut(s) 172, 220, 442, 479, 587
BshFI GGCC 2 cut(s) 253, 516
BshNI GGYRCC 1 cut(s) 623
BslI CCNNNNNNNGG 1 cut(s) 275
BsnI GGCC 2 cut(s) 253, 516
BspACI CCGC 1 cut(s) 596
BspANI GGCC 2 cut(s) 253, 516
BspLI GGNNCC 3 cut(s) 435, 475, 625
BspMAI CTGCAG 2 cut(s) 577, 676
BspMI ACCTGC 1 cut(s) 461
BspQI GCTCTTC 1 cut(s) 29
BspT107I GGYRCC 1 cut(s) 623
BsrDI GCAATG 1 cut(s) 552
BsrI ACTGG 2 cut(s) 387, 627
BssECI CCNNGG 1 cut(s) 248
BssSI CACGAG 1 cut(s) 639
BssT1I CCWWGG 1 cut(s) 248
Bst2BI CACGAG 1 cut(s) 639
Bst2UI CCWGG 1 cut(s) 276
Bst4CI ACNGT 1 cut(s) 683
Bst6I CTCTTC 2 cut(s) 29, 528
BstC8I GCNNGC 4 cut(s) 154, 190, 311, 315
BstDEI CTNAG 2 cut(s) 15, 140
BstF5I GGATG 1 cut(s) 566
BstMWI GCNNNNNNNGC 2 cut(s) 464, 674
BstNI CCWGG 1 cut(s) 276
BstSCI CCNGG 1 cut(s) 274
BstSFI CTRYAG 2 cut(s) 573, 672
BstV1I GCAGC 5 cut(s) 172, 220, 442, 479, 587
BsuRI GGCC 2 cut(s) 253, 516
BtgZI GCGATG 1 cut(s) 171
BtsCI GGATG 1 cut(s) 566
BtsI GCAGTG 1 cut(s) 567
BtsIMutI CAGTG 1 cut(s) 567
BveI ACCTGC 1 cut(s) 461
Cac8I GCNNGC 4 cut(s) 154, 190, 311, 315
CaiI CAGNNNCTG 1 cut(s) 581
Cfr13I GGNCC 1 cut(s) 406
CsiI ACCWGGT 1 cut(s) 274
Csp6I GTAC 3 cut(s) 73, 390, 624
CviAII CATG 1 cut(s) 107
CviQI GTAC 3 cut(s) 73, 390, 624
DdeI CTNAG 2 cut(s) 15, 140
EaeI YGGCCR 1 cut(s) 514
Eam1104I CTCTTC 2 cut(s) 29, 528
EarI CTCTTC 2 cut(s) 29, 528
EciI GGCGGA 1 cut(s) 585
Eco130I CCWWGG 1 cut(s) 248
Eco147I AGGCCT 1 cut(s) 253
Eco47I GGWCC 1 cut(s) 406
Eco57I CTGAAG 2 cut(s) 552, 576
EcoRII CCWGG 1 cut(s) 274
EcoT14I CCWWGG 1 cut(s) 248
ErhI CCWWGG 1 cut(s) 248
FaeI CATG 1 cut(s) 110
FaiI YATR 9 cut(s) 6, 32, 34, 69, 94, 108, 172, 195, 228
FalI AAGNNNNNCTT 2 cut(s) 8, 40
FatI CATG 1 cut(s) 106
Fnu4HI GCNGC 6 cut(s) 186, 234, 456, 468, 576, 675
FokI GGATG 1 cut(s) 553
Fsp4HI GCNGC 6 cut(s) 186, 234, 456, 468, 576, 675
FspBI CTAG 2 cut(s) 147, 399
GluI GCNGC 6 cut(s) 186, 234, 456, 468, 576, 675
GsuI CTGGAG 1 cut(s) 303
HaeIII GGCC 2 cut(s) 253, 516
Hin1II CATG 1 cut(s) 110
HinfI GANTC 2 cut(s) 77, 506
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 1 cut(s) 201
Hpy8I GTNNAC 1 cut(s) 73
HpyAV CCTTC 2 cut(s) 91, 614
HpyCH4III ACNGT 1 cut(s) 683
HpyCH4V TGCA 7 cut(s) 101, 188, 223, 550, 575, 668, 674
HpyF10VI GCNNNNNNNGC 2 cut(s) 464, 674
HpyF3I CTNAG 2 cut(s) 15, 140
Hsp92II CATG 1 cut(s) 110
KpnI GGTACC 1 cut(s) 627
LguI GCTCTTC 1 cut(s) 29
LmnI GCTCC 4 cut(s) 322, 328, 439, 502
Lsp1109I GCAGC 5 cut(s) 172, 220, 442, 479, 587
LweI GCATC 2 cut(s) 653, 677
MabI ACCWGGT 1 cut(s) 274
MaeI CTAG 2 cut(s) 147, 399
MaeIII GTNAC 1 cut(s) 562
MboII GAAGA 4 cut(s) 16, 377, 387, 545
MlsI TGGCCA 1 cut(s) 516
MluNI TGGCCA 1 cut(s) 516
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 5 cut(s) 264, 471, 529, 535, 580
Mox20I TGGCCA 1 cut(s) 516
MscI TGGCCA 1 cut(s) 516
MseI TTAA 1 cut(s) 650
MslI CAYNNNNRTG 1 cut(s) 111
Msp20I TGGCCA 1 cut(s) 516
MspR9I CCNGG 1 cut(s) 276
MvaI CCWGG 1 cut(s) 276
MwoI GCNNNNNNNGC 2 cut(s) 464, 674
NlaIII CATG 1 cut(s) 110
NlaIV GGNNCC 3 cut(s) 435, 475, 625
NmuCI GTSAC 1 cut(s) 562
PceI AGGCCT 1 cut(s) 253
PciSI GCTCTTC 1 cut(s) 29
PcsI WCGNNNNNNNCGW 1 cut(s) 637
PfeI GAWTC 2 cut(s) 77, 506
PkrI GCNGC 6 cut(s) 187, 235, 457, 469, 577, 676
Psp6I CCWGG 1 cut(s) 274
PspGI CCWGG 1 cut(s) 274
PspN4I GGNNCC 3 cut(s) 435, 475, 625
PspPI GGNCC 1 cut(s) 406
PstI CTGCAG 2 cut(s) 577, 676
PstNI CAGNNNCTG 1 cut(s) 581
RsaI GTAC 3 cut(s) 74, 391, 625
RsaNI GTAC 3 cut(s) 73, 390, 624
RseI CAYNNNNRTG 1 cut(s) 111
SapI GCTCTTC 1 cut(s) 29
SaqAI TTAA 1 cut(s) 650
SatI GCNGC 6 cut(s) 186, 234, 456, 468, 576, 675
Sau96I GGNCC 1 cut(s) 406
ScrFI CCNGG 1 cut(s) 276
SexAI ACCWGGT 1 cut(s) 274
SfaNI GCATC 2 cut(s) 653, 677
SfcI CTRYAG 2 cut(s) 573, 672
SinI GGWCC 1 cut(s) 406
SmiMI CAYNNNNRTG 1 cut(s) 111
SmlI CTYRAG 1 cut(s) 462
SmoI CTYRAG 1 cut(s) 462
SseBI AGGCCT 1 cut(s) 253
SsiI CCGC 1 cut(s) 596
SspMI CTAG 2 cut(s) 147, 399
StuI AGGCCT 1 cut(s) 253
StyD4I CCNGG 1 cut(s) 274
StyI CCWWGG 1 cut(s) 248
TaaI ACNGT 1 cut(s) 683
TatI WGTACW 1 cut(s) 389
TfiI GAWTC 2 cut(s) 77, 506
Tru1I TTAA 1 cut(s) 650
Tru9I TTAA 1 cut(s) 650
TscAI CASTG 1 cut(s) 567
TseFI GTSAC 1 cut(s) 562
TseI GCWGC 6 cut(s) 185, 233, 455, 467, 575, 674
Tsp45I GTSAC 1 cut(s) 562
TspDTI ATGAA 1 cut(s) 16
TspRI CASTG 1 cut(s) 567
VpaK11BI GGWCC 1 cut(s) 406
XspI CTAG 2 cut(s) 147, 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.