Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004929

Physical Location & Seq

Genomic Coordinates Reverse (-)

7153484 .. 7156423

Gene Structure 2940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00165400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGATTGGATCATTTCTTACCAGAGGACTTGTGATGATCCTTGGCTATGCTTATCCAGCCTATGAGTGCTACAAAACTGTTGAAAAGAACAAGCCGGAGATCGAACAACTTCGCTTTTGGTGTCAGTATTGGATTTTGGTGGCTGTTTTGACGGTATGTGAGAGAGTTGGTGATGCTTTTGTTTCATGGGTTCCGATGTATAGTGAAGCTAAGTTGCTCTTCATCATATATCTGTGGTTTCCTAAAACAAAGGGAACGACTTATGTGTACGATTCCTTCTTTAGACCATATCTTGCAAAGCATGAGAATGATATTGATAGGAACTTGTTAGAACTAAGAACTAGGGCTGGTGATATCGCTATTTTATATTGGCAAAGAGCTGCAAGCTATGGTCAGACAAGAGTATTTGATATTTTGCAGTATGTTGCTGCTCAATCAACACCAAGGCCTCGCGTTCAGCCACAACCAGGTGTTAGGGGTCGCCAACCCCCTGCTGCTCGCCAGCCTGCTCCAGCTCCAAATCGCCAACCAGCTACAACAACGCAATCCCAACCCGAAGAACCACCATCTCCCACTTCCAGTACATCTTCTAGTAAGGACCAAAGAGAGATAGCAGAAGCGTTGGCTCCTTTACCAAAGCCTAAAGCTGCCCCCCATGCAGCAGGTTCCAATACTCAAAAAGCACCAGCTCCACCTGAATCATCTGGCCAATCTACACCAACTGAAGAGGTGGAGGCAATGCAGACTGAAGCAGTGACATCCTCTGCAGCAACTGAAAATACAAATCCGCCCCGAAAGATACACAAATGGAAGGCACCGTTCGGCAAACACGAGCATCGTTTAGGAAAACCCGTTCTGCATCTGCAGCAAGCCGTTGAAGCAGTCTGTCTTTCAAAATTCAGCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22

Protein Analysis

302

Amino Acids

33.82

Weight (kDa)

9.24

Isoelectric Point (pI)

58.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TB2_DP1_HVA22	PF03134	19 - 97	4.5e-26	TB2/DP1, HVA22 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19950 AT1G75700 AT1G75700 AT1G75700
fragaria_vesca	FvH4_2g38590 FvH4_2g38590
malus_domestica	MD02G1218000.v1.1 MD05G1114200.v1.1 MD08G1013900.v1.1 MD15G1013400.v1.1
prunus_persica	Prupe.1G366900_v2.0.a1 Prupe.8G158600_v2.0.a1 Prupe.8G158600_v2.0.a1 Prupe.8G158700_v2.0.a1 Prupe.8G158700_v2.0.a1
pyrus_communis	pycom08g01260 pycom10g10090 pycom15g01160
rosa_chinensis	RchiOBHm_Chr6g0302701
rosa_laevigata	RLG00000011146
rosa_multiflora	Rmu_sc0009897.1_g000003
rosa_roxburghii	Rroxscaffold_7G00165400
rosa_rugosa	Rorug06G0316200 Rorug06G0316300 Rorug06G0316400
rosa_samantha	Rh6AG429700 Rh6BG472900 Rh6CG442100 Rh6DG428800
rosa_wichuraiana	Rw6G037200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	653
AccB1I	GGYRCC	1 cut(s)	814
AccII	CGCG	1 cut(s)	453
AciI	CCGC	1 cut(s)	788
AclWI	GGATC	2 cut(s)	16, 31
AcoI	YGGCCR	1 cut(s)	706
AcsI	RAATTY	1 cut(s)	896
AcuI	CTGAAG	2 cut(s)	744, 768
AfaI	GTAC	2 cut(s)	269, 583
AfiI	CCNNNNNNNGG	1 cut(s)	467
AgsI	TTSAA	3 cut(s)	83, 878, 894
AjnI	CCWGG	1 cut(s)	466
AloI	GAACNNNNNNTCC	2 cut(s)	837, 869
AluBI	AGCT	8 cut(s)	209, 380, 387, 515, 533, 647, 689, 903
AluI	AGCT	8 cut(s)	209, 380, 387, 515, 533, 647, 689, 903
AlwI	GGATC	2 cut(s)	16, 31
AlwNI	CAGNNNCTG	1 cut(s)	773
AoxI	GGCC	2 cut(s)	446, 706
ApeKI	GCWGC	7 cut(s)	380, 428, 494, 647, 659, 767, 865
ApoI	RAATTY	1 cut(s)	896
Asp700I	GAANNNNTTC	1 cut(s)	108
AspS9I	GGNCC	1 cut(s)	598
AsuHPI	GGTGA	2 cut(s)	182, 362
AvaII	GGWCC	1 cut(s)	598
BalI	TGGCCA	1 cut(s)	708
BanI	GGYRCC	1 cut(s)	814
BarI	GAAGNNNNNNTAC	2 cut(s)	260, 292
BauI	CACGAG	1 cut(s)	830
BbvI	GCAGC	7 cut(s)	367, 415, 481, 634, 671, 779, 877
BccI	CCATC	1 cut(s)	574
BceAI	ACGGC	1 cut(s)	857
BciT130I	CCWGG	1 cut(s)	468
BfaI	CTAG	2 cut(s)	342, 591
BfmI	CTRYAG	2 cut(s)	765, 863
BfuAI	ACCTGC	1 cut(s)	653
BisI	GCNGC	7 cut(s)	381, 429, 495, 648, 660, 768, 866
BlsI	GCNGC	7 cut(s)	382, 430, 496, 649, 661, 769, 867
Bme1390I	CCNGG	1 cut(s)	468
Bme18I	GGWCC	1 cut(s)	598
BmgT120I	GGNCC	1 cut(s)	598
BmiI	GGNNCC	4 cut(s)	192, 627, 667, 816
BmrFI	CCNGG	1 cut(s)	468
BmsI	GCATC	3 cut(s)	163, 844, 868
BpmI	CTGGAG	1 cut(s)	495
BsaJI	CCNNGG	2 cut(s)	40, 443
Bsc4I	CCNNNNNNNGG	1 cut(s)	467
Bse1I	ACTGG	1 cut(s)	579
Bse3DI	GCAATG	1 cut(s)	744
BseBI	CCWGG	1 cut(s)	468
BseDI	CCNNGG	2 cut(s)	40, 443
BseGI	GGATG	1 cut(s)	758
BseLI	CCNNNNNNNGG	1 cut(s)	467
BseMI	GCAATG	1 cut(s)	744
BseNI	ACTGG	1 cut(s)	579
BseXI	GCAGC	7 cut(s)	367, 415, 481, 634, 671, 779, 877
Bsh1236I	CGCG	1 cut(s)	453
BshFI	GGCC	2 cut(s)	448, 708
BshNI	GGYRCC	1 cut(s)	814
BsiSI	CCGG	1 cut(s)	95
BslI	CCNNNNNNNGG	1 cut(s)	467
BsnI	GGCC	2 cut(s)	448, 708
Bsp143I	GATC	3 cut(s)	8, 36, 99
BspACI	CCGC	1 cut(s)	788
BspANI	GGCC	2 cut(s)	448, 708
BspFNI	CGCG	1 cut(s)	453
BspLI	GGNNCC	4 cut(s)	192, 627, 667, 816
BspMAI	CTGCAG	2 cut(s)	769, 867
BspMI	ACCTGC	1 cut(s)	653
BspPI	GGATC	2 cut(s)	16, 31
BspQI	GCTCTTC	1 cut(s)	224
BspT107I	GGYRCC	1 cut(s)	814
BsrDI	GCAATG	1 cut(s)	744
BsrI	ACTGG	1 cut(s)	579
BssECI	CCNNGG	2 cut(s)	40, 443
BssMI	GATC	3 cut(s)	8, 36, 99
BssSI	CACGAG	1 cut(s)	830
BssT1I	CCWWGG	2 cut(s)	40, 443
Bst2BI	CACGAG	1 cut(s)	830
Bst2UI	CCWGG	1 cut(s)	468
Bst4CI	ACNGT	3 cut(s)	79, 154, 819
Bst6I	CTCTTC	2 cut(s)	224, 720
BstC8I	GCNNGC	5 cut(s)	385, 499, 503, 507, 870
BstDEI	CTNAG	2 cut(s)	210, 335
BstF5I	GGATG	1 cut(s)	758
BstFNI	CGCG	1 cut(s)	453
BstKTI	GATC	3 cut(s)	11, 39, 102
BstMBI	GATC	3 cut(s)	8, 36, 99
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 656, 865, 878
BstNI	CCWGG	1 cut(s)	468
BstSCI	CCNGG	1 cut(s)	466
BstSFI	CTRYAG	2 cut(s)	765, 863
BstUI	CGCG	1 cut(s)	453
BstV1I	GCAGC	7 cut(s)	367, 415, 481, 634, 671, 779, 877
BsuRI	GGCC	2 cut(s)	448, 708
BtsCI	GGATG	1 cut(s)	758
BtsI	GCAGTG	1 cut(s)	759
BtsIMutI	CAGTG	1 cut(s)	759
BveI	ACCTGC	1 cut(s)	653
Cac8I	GCNNGC	5 cut(s)	385, 499, 503, 507, 870
CaiI	CAGNNNCTG	1 cut(s)	773
Cfr13I	GGNCC	1 cut(s)	598
CsiI	ACCWGGT	1 cut(s)	466
Csp6I	GTAC	2 cut(s)	268, 582
CviAII	CATG	3 cut(s)	186, 302, 656
CviQI	GTAC	2 cut(s)	268, 582
DdeI	CTNAG	2 cut(s)	210, 335
DpnI	GATC	3 cut(s)	10, 38, 101
DpnII	GATC	3 cut(s)	8, 36, 99
EaeI	YGGCCR	1 cut(s)	706
Eam1104I	CTCTTC	2 cut(s)	224, 720
EarI	CTCTTC	2 cut(s)	224, 720
EciI	GGCGGA	1 cut(s)	777
Eco130I	CCWWGG	2 cut(s)	40, 443
Eco147I	AGGCCT	1 cut(s)	448
Eco32I	GATATC	1 cut(s)	355
Eco47I	GGWCC	1 cut(s)	598
Eco57I	CTGAAG	2 cut(s)	744, 768
EcoRII	CCWGG	1 cut(s)	466
EcoRV	GATATC	1 cut(s)	355
EcoT14I	CCWWGG	2 cut(s)	40, 443
ErhI	CCWWGG	2 cut(s)	40, 443
FaeI	CATG	3 cut(s)	189, 305, 659
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
FatI	CATG	3 cut(s)	185, 301, 655
Fnu4HI	GCNGC	7 cut(s)	381, 429, 495, 648, 660, 768, 866
FokI	GGATG	1 cut(s)	745
Fsp4HI	GCNGC	7 cut(s)	381, 429, 495, 648, 660, 768, 866
FspBI	CTAG	2 cut(s)	342, 591
GluI	GCNGC	7 cut(s)	381, 429, 495, 648, 660, 768, 866
GsuI	CTGGAG	1 cut(s)	495
HaeIII	GGCC	2 cut(s)	448, 708
HapII	CCGG	1 cut(s)	95
Hin1II	CATG	3 cut(s)	189, 305, 659
HinfI	GANTC	2 cut(s)	272, 698
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	2 cut(s)	182, 362
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	2 cut(s)	195, 396
Hpy8I	GTNNAC	1 cut(s)	268
HpyAV	CCTTC	2 cut(s)	286, 805
HpyCH4III	ACNGT	3 cut(s)	79, 154, 819
HpyCH4V	TGCA	8 cut(s)	296, 383, 418, 659, 742, 767, 859, 865
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 656, 865, 878
HpyF3I	CTNAG	2 cut(s)	210, 335
Hsp92II	CATG	3 cut(s)	189, 305, 659
Kzo9I	GATC	3 cut(s)	8, 36, 99
LguI	GCTCTTC	1 cut(s)	224
LmnI	GCTCC	4 cut(s)	514, 520, 631, 694
Lsp1109I	GCAGC	7 cut(s)	367, 415, 481, 634, 671, 779, 877
LweI	GCATC	3 cut(s)	163, 844, 868
MabI	ACCWGGT	1 cut(s)	466
MaeI	CTAG	2 cut(s)	342, 591
MaeIII	GTNAC	1 cut(s)	754
MalI	GATC	3 cut(s)	10, 38, 101
MboI	GATC	3 cut(s)	8, 36, 99
MboII	GAAGA	4 cut(s)	211, 569, 579, 737
MlsI	TGGCCA	1 cut(s)	708
MluCI	AATT	1 cut(s)	896
MluNI	TGGCCA	1 cut(s)	708
MnlI	CCTC	5 cut(s)	17, 459, 721, 727, 772
Mox20I	TGGCCA	1 cut(s)	708
MroXI	GAANNNNTTC	1 cut(s)	108
MscI	TGGCCA	1 cut(s)	708
MslI	CAYNNNNRTG	1 cut(s)	306
Msp20I	TGGCCA	1 cut(s)	708
MspI	CCGG	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	468
MvaI	CCWGG	1 cut(s)	468
MvnI	CGCG	1 cut(s)	453
MwoI	GCNNNNNNNGC	4 cut(s)	56, 656, 865, 878
NdeII	GATC	3 cut(s)	8, 36, 99
NlaIII	CATG	3 cut(s)	189, 305, 659
NlaIV	GGNNCC	4 cut(s)	192, 627, 667, 816
NmuCI	GTSAC	1 cut(s)	754
PceI	AGGCCT	1 cut(s)	448
PciSI	GCTCTTC	1 cut(s)	224
PcsI	WCGNNNNNNNCGW	1 cut(s)	828
PdmI	GAANNNNTTC	1 cut(s)	108
PfeI	GAWTC	2 cut(s)	272, 698
PkrI	GCNGC	7 cut(s)	382, 430, 496, 649, 661, 769, 867
Psp6I	CCWGG	1 cut(s)	466
PspGI	CCWGG	1 cut(s)	466
PspN4I	GGNNCC	4 cut(s)	192, 627, 667, 816
PspPI	GGNCC	1 cut(s)	598
PstI	CTGCAG	2 cut(s)	769, 867
PstNI	CAGNNNCTG	1 cut(s)	773
RsaI	GTAC	2 cut(s)	269, 583
RsaNI	GTAC	2 cut(s)	268, 582
RseI	CAYNNNNRTG	1 cut(s)	306
SapI	GCTCTTC	1 cut(s)	224
SatI	GCNGC	7 cut(s)	381, 429, 495, 648, 660, 768, 866
Sau3AI	GATC	3 cut(s)	8, 36, 99
Sau96I	GGNCC	1 cut(s)	598
ScrFI	CCNGG	1 cut(s)	468
SexAI	ACCWGGT	1 cut(s)	466
SfaNI	GCATC	3 cut(s)	163, 844, 868
SfcI	CTRYAG	2 cut(s)	765, 863
SinI	GGWCC	1 cut(s)	598
SmiMI	CAYNNNNRTG	1 cut(s)	306
Sse9I	AATT	1 cut(s)	896
SseBI	AGGCCT	1 cut(s)	448
SsiI	CCGC	1 cut(s)	788
SspMI	CTAG	2 cut(s)	342, 591
StuI	AGGCCT	1 cut(s)	448
StyD4I	CCNGG	1 cut(s)	466
StyI	CCWWGG	2 cut(s)	40, 443
TaaI	ACNGT	3 cut(s)	79, 154, 819
TaqI	TCGA	1 cut(s)	102
TasI	AATT	1 cut(s)	896
TatI	WGTACW	1 cut(s)	581
TfiI	GAWTC	2 cut(s)	272, 698
TscAI	CASTG	1 cut(s)	759
TseFI	GTSAC	1 cut(s)	754
TseI	GCWGC	7 cut(s)	380, 428, 494, 647, 659, 767, 865
Tsp45I	GTSAC	1 cut(s)	754
TspDTI	ATGAA	2 cut(s)	174, 211
TspRI	CASTG	1 cut(s)	759
VpaK11BI	GGWCC	1 cut(s)	598
XapI	RAATTY	1 cut(s)	896
XmnI	GAANNNNTTC	1 cut(s)	108
XspI	CTAG	2 cut(s)	342, 591

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.