AT1G75700

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0004929
Physical Location & Seq
Forward (+)
28423495 .. 28425112
1618 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G75700.3

Sequence Viewer

Length: 534 bp
ATGATTGGATCGTTTCTGACAAGAGGGCTTTTAATGGTGTTTGGATATGCATATCCTGCTTATGAGTGCTTCAAAACGGTCGAACTCAACAAGCCTGAAATTCAACAACTTCAGTTCTGGTGCCAGTATTGGATTATTGTAGCTGCTTTGACGATTTTCGAAAGAATTGGTGATGCTCTTGTTTCTTGGTTACCAATGTATAGCGAGGCGAAGTTGGCTTTCTTCATTTATCTCTGGTTTCCAAAGACTAAAGGAACAACATACGTTTACGATTCTTTCTTCAGGCCATATATAGCAAAGCATGAAAATGAAATTGACCGCAACTTGGTGAAGGTAAAGACTAGAGCTAAGGATATGGCAATGATATATCTCCAAAAAGCAATCAACCAAGGGCAGACCAAATTCTTTGAGATCTTACAGTATATCACAGAACAATCAACACCAAAATCTAAGGCTGAGGAAAAGAAAGAGACAACAATACCTAAACTCGATGATCCAATTCTTAAGGTGAAAGAAAACGAAGTCACTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

177

Amino Acids

20.86

Weight (kDa)

8.89

Isoelectric Point (pI)

36.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 74 - 126 2e-16 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 120
AciI CCGC 1 cut(s) 319
AclWI GGATC 2 cut(s) 16, 488
AcsI RAATTY 2 cut(s) 99, 401
AcuI CTGAAG 2 cut(s) 95, 265
AfiI CCNNNNNNNGG 1 cut(s) 325
AflII CTTAAG 1 cut(s) 503
AgsI TTSAA 2 cut(s) 73, 104
AluBI AGCT 2 cut(s) 143, 347
AluI AGCT 2 cut(s) 143, 347
Alw26I GTCTC 1 cut(s) 464
AlwI GGATC 2 cut(s) 16, 488
AoxI GGCC 1 cut(s) 284
ApeKI GCWGC 1 cut(s) 143
ApoI RAATTY 2 cut(s) 99, 401
AsuHPI GGTGA 3 cut(s) 182, 340, 520
AsuII TTCGAA 1 cut(s) 159
BanI GGYRCC 1 cut(s) 120
BbvCI CCTCAGC 1 cut(s) 456
BbvI GCAGC 1 cut(s) 130
BcoDI GTCTC 1 cut(s) 464
BfaI CTAG 1 cut(s) 342
BfrI CTTAAG 1 cut(s) 503
BglII AGATCT 1 cut(s) 411
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
BmiI GGNNCC 1 cut(s) 122
BmsI GCATC 1 cut(s) 163
Bpu10I CCTNAGC 2 cut(s) 348, 456
Bpu14I TTCGAA 1 cut(s) 159
BsaJI CCNNGG 1 cut(s) 388
Bsc4I CCNNNNNNNGG 1 cut(s) 325
Bse1I ACTGG 1 cut(s) 124
Bse3DI GCAATG 1 cut(s) 366
BseDI CCNNGG 1 cut(s) 388
BseLI CCNNNNNNNGG 1 cut(s) 325
BseMI GCAATG 1 cut(s) 366
BseMII CTCAG 1 cut(s) 447
BseNI ACTGG 1 cut(s) 124
BseXI GCAGC 1 cut(s) 130
Bsh1285I CGRYCG 1 cut(s) 81
BshFI GGCC 1 cut(s) 286
BshNI GGYRCC 1 cut(s) 120
BsiEI CGRYCG 1 cut(s) 81
BslI CCNNNNNNNGG 1 cut(s) 325
BsmAI GTCTC 1 cut(s) 464
BsnI GGCC 1 cut(s) 286
Bsp119I TTCGAA 1 cut(s) 159
Bsp143I GATC 3 cut(s) 8, 411, 493
BspACI CCGC 1 cut(s) 319
BspANI GGCC 1 cut(s) 286
BspCNI CTCAG 1 cut(s) 448
BspLI GGNNCC 1 cut(s) 122
BspPI GGATC 2 cut(s) 16, 488
BspT104I TTCGAA 1 cut(s) 159
BspT107I GGYRCC 1 cut(s) 120
BspTI CTTAAG 1 cut(s) 503
BsrDI GCAATG 1 cut(s) 366
BsrI ACTGG 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 388
BssMI GATC 3 cut(s) 8, 411, 493
BssT1I CCWWGG 1 cut(s) 388
Bst4CI ACNGT 2 cut(s) 79, 420
BstAFI CTTAAG 1 cut(s) 503
BstAPI GCANNNNNTGC 1 cut(s) 56
BstBI TTCGAA 1 cut(s) 159
BstDEI CTNAG 3 cut(s) 348, 450, 456
BstEII GGTNACC 1 cut(s) 189
BstKTI GATC 3 cut(s) 11, 414, 496
BstMAI GTCTC 1 cut(s) 464
BstMBI GATC 3 cut(s) 8, 411, 493
BstMCI CGRYCG 1 cut(s) 81
BstMWI GCNNNNNNNGC 2 cut(s) 56, 215
BstPI GGTNACC 1 cut(s) 189
BstV1I GCAGC 1 cut(s) 130
BstX2I RGATCY 1 cut(s) 411
BstYI RGATCY 1 cut(s) 411
BsuRI GGCC 1 cut(s) 286
CviAII CATG 1 cut(s) 302
CviJI RGCY 7 cut(s) 28, 94, 143, 218, 286, 347, 455
CviKI_1 RGCY 7 cut(s) 28, 94, 143, 218, 286, 347, 455
DdeI CTNAG 3 cut(s) 348, 450, 456
DpnI GATC 3 cut(s) 10, 413, 495
DpnII GATC 3 cut(s) 8, 411, 493
Eco130I CCWWGG 1 cut(s) 388
Eco57I CTGAAG 2 cut(s) 95, 265
Eco91I GGTNACC 1 cut(s) 189
EcoO65I GGTNACC 1 cut(s) 189
EcoT14I CCWWGG 1 cut(s) 388
EcoT22I ATGCAT 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 388
FaeI CATG 1 cut(s) 305
FatI CATG 1 cut(s) 301
Fnu4HI GCNGC 1 cut(s) 144
Fsp4HI GCNGC 1 cut(s) 144
FspBI CTAG 1 cut(s) 342
GluI GCNGC 1 cut(s) 144
HaeIII GGCC 1 cut(s) 286
Hin1II CATG 1 cut(s) 305
HinfI GANTC 1 cut(s) 272
HphI GGTGA 3 cut(s) 182, 340, 520
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 1 cut(s) 18
Hpy8I GTNNAC 1 cut(s) 268
HpyAV CCTTC 1 cut(s) 325
HpyCH4III ACNGT 2 cut(s) 79, 420
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 1 cut(s) 50
HpyF10VI GCNNNNNNNGC 2 cut(s) 56, 215
HpyF3I CTNAG 3 cut(s) 348, 450, 456
HpySE526I ACGT 1 cut(s) 264
Hsp92II CATG 1 cut(s) 305
Kzo9I GATC 3 cut(s) 8, 411, 493
LpnPI CCDG 6 cut(s) 69, 103, 108, 137, 220, 268
Lsp1109I GCAGC 1 cut(s) 130
LweI GCATC 1 cut(s) 163
MaeI CTAG 1 cut(s) 342
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 2 cut(s) 189, 523
MalI GATC 3 cut(s) 10, 413, 495
MboI GATC 3 cut(s) 8, 411, 493
MboII GAAGA 2 cut(s) 214, 271
MflI RGATCY 1 cut(s) 411
MluCI AATT 5 cut(s) 99, 165, 312, 401, 498
MnlI CCTC 3 cut(s) 17, 199, 451
Mph1103I ATGCAT 1 cut(s) 52
MseI TTAA 2 cut(s) 32, 504
MslI CAYNNNNRTG 1 cut(s) 306
MspCI CTTAAG 1 cut(s) 503
MwoI GCNNNNNNNGC 2 cut(s) 56, 215
NdeII GATC 3 cut(s) 8, 411, 493
NlaIII CATG 1 cut(s) 305
NlaIV GGNNCC 1 cut(s) 122
NmuCI GTSAC 1 cut(s) 523
NsiI ATGCAT 1 cut(s) 52
NspV TTCGAA 1 cut(s) 159
PfeI GAWTC 1 cut(s) 272
PkrI GCNGC 1 cut(s) 145
PspEI GGTNACC 1 cut(s) 189
PspN4I GGNNCC 1 cut(s) 122
PsuI RGATCY 1 cut(s) 411
RseI CAYNNNNRTG 1 cut(s) 306
SaqAI TTAA 2 cut(s) 32, 504
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 3 cut(s) 8, 411, 493
SetI ASST 6 cut(s) 145, 267, 336, 349, 484, 510
SfaNI GCATC 1 cut(s) 163
SfuI TTCGAA 1 cut(s) 159
SmiMI CAYNNNNRTG 1 cut(s) 306
SmlI CTYRAG 1 cut(s) 503
SmoI CTYRAG 1 cut(s) 503
Sse9I AATT 5 cut(s) 99, 165, 312, 401, 498
SsiI CCGC 1 cut(s) 319
SspMI CTAG 1 cut(s) 342
StyI CCWWGG 1 cut(s) 388
TaaI ACNGT 2 cut(s) 79, 420
TaiI ACGT 1 cut(s) 267
TaqI TCGA 3 cut(s) 81, 159, 489
TasI AATT 5 cut(s) 99, 165, 312, 401, 498
TfiI GAWTC 1 cut(s) 272
Tru1I TTAA 2 cut(s) 32, 504
Tru9I TTAA 2 cut(s) 32, 504
TseFI GTSAC 1 cut(s) 523
TseI GCWGC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 523
TspDTI ATGAA 3 cut(s) 214, 318, 324
Vha464I CTTAAG 1 cut(s) 503
XapI RAATTY 2 cut(s) 99, 401
XspI CTAG 1 cut(s) 342
Zsp2I ATGCAT 1 cut(s) 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.