Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0004929

Physical Location & Seq

Genomic Coordinates Reverse (-)

67985859 .. 67989331

Gene Structure 3473 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG472900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGTATAGTGAAGCTAAGTTGCTCTTCATCATATATCTGTGGTTTCCTAAAACAAAGGGAACGACCTATGTGTACGATTCCTTCTTTAGACCATATCTTGCAAAGCATGAGAATGATATTGATAGGAACTTGTTGGAACTAAGAACTAGGGCTGGTGATTTTGCTATTTTATATTGGCAAAGAGCTGCAAGCTATGGTCAGACAAGAGTATTTGATATTTTGCAGTATGTTGCTGCTCAATCAACACCAAGGCCTCGCCCTGTTCAGCCACAACCAGGTGTTAGGGGTCGCCAACCCCCTGCTGCTCGCCAGCCTGCTCCAGCTCCAAATCGCCAACCGGCTACAACAACGCAATCCCAACCCGAAGAACCACCATCTCCCACTTCCAGTACATCTTCTAGTAAGGACCAAAGAGAGATAGCAGAAGCGTTGGCTCCTTTACCAAAGCCTAAAGCTGCCCCCCAAGCAGCAGGTTCCAATACTCAAAAAACACCAGCTCCACCTGAATCATCTGGCCAATCTACACCAACTGAAGAGGTGGAGGCAATGCAGACTGAAGCAGTGACATCCTCAGCAGCAACTGAAAATACAAATCCGCCCCCGAAAGATACACTAATGGAAGGTCCCATTCGGCAAACACGAGCATCATTAAGGAAAACCCGTTCTGCATCTGCAGCAAACCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22

Protein Analysis

228

Amino Acids

25.05

Weight (kDa)

9.69

Isoelectric Point (pI)

65.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TB2_DP1_HVA22	PF03134	1 - 32	5.7e-08	TB2/DP1, HVA22 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19950 AT1G75700 AT1G75700 AT1G75700
fragaria_vesca	FvH4_2g38590 FvH4_2g38590
malus_domestica	MD02G1218000.v1.1 MD05G1114200.v1.1 MD08G1013900.v1.1 MD15G1013400.v1.1
prunus_persica	Prupe.1G366900_v2.0.a1 Prupe.8G158600_v2.0.a1 Prupe.8G158600_v2.0.a1 Prupe.8G158700_v2.0.a1 Prupe.8G158700_v2.0.a1
pyrus_communis	pycom08g01260 pycom10g10090 pycom15g01160
rosa_chinensis	RchiOBHm_Chr6g0302701
rosa_laevigata	RLG00000011146
rosa_multiflora	Rmu_sc0009897.1_g000003
rosa_roxburghii	Rroxscaffold_7G00165400
rosa_rugosa	Rorug06G0316200 Rorug06G0316300 Rorug06G0316400
rosa_samantha	Rh6AG429700 Rh6BG472900 Rh6CG442100 Rh6DG428800
rosa_wichuraiana	Rw6G037200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	461
AciI	CCGC	1 cut(s)	596
AcoI	YGGCCR	1 cut(s)	514
AcuI	CTGAAG	2 cut(s)	552, 576
AfaI	GTAC	2 cut(s)	74, 391
AfiI	CCNNNNNNNGG	1 cut(s)	275
AjnI	CCWGG	1 cut(s)	274
AloI	GAACNNNNNNTCC	2 cut(s)	646, 678
AluBI	AGCT	6 cut(s)	14, 185, 192, 323, 455, 497
AluI	AGCT	6 cut(s)	14, 185, 192, 323, 455, 497
AlwNI	CAGNNNCTG	1 cut(s)	581
AoxI	GGCC	2 cut(s)	251, 514
ApeKI	GCWGC	7 cut(s)	185, 233, 302, 455, 467, 575, 674
AspS9I	GGNCC	2 cut(s)	406, 623
AsuHPI	GGTGA	1 cut(s)	167
AvaII	GGWCC	2 cut(s)	406, 623
BalI	TGGCCA	1 cut(s)	516
BarI	GAAGNNNNNNTAC	2 cut(s)	65, 97
BauI	CACGAG	1 cut(s)	639
BbvCI	CCTCAGC	1 cut(s)	571
BbvI	GCAGC	6 cut(s)	172, 220, 289, 442, 479, 587
BccI	CCATC	1 cut(s)	382
BciT130I	CCWGG	1 cut(s)	276
BfaI	CTAG	2 cut(s)	147, 399
BfmI	CTRYAG	1 cut(s)	672
BfuAI	ACCTGC	1 cut(s)	461
BisI	GCNGC	7 cut(s)	186, 234, 303, 456, 468, 576, 675
BlsI	GCNGC	7 cut(s)	187, 235, 304, 457, 469, 577, 676
Bme1390I	CCNGG	1 cut(s)	276
Bme18I	GGWCC	2 cut(s)	406, 623
BmgT120I	GGNCC	2 cut(s)	406, 623
BmiI	GGNNCC	3 cut(s)	435, 475, 625
BmrFI	CCNGG	1 cut(s)	276
BmsI	GCATC	2 cut(s)	653, 677
BpmI	CTGGAG	1 cut(s)	303
Bpu10I	CCTNAGC	1 cut(s)	571
BsaJI	CCNNGG	1 cut(s)	248
BsaXI	ACNNNNNCTCC	2 cut(s)	481, 511
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse118I	RCCGGY	1 cut(s)	337
Bse1I	ACTGG	1 cut(s)	387
Bse3DI	GCAATG	1 cut(s)	552
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	1 cut(s)	248
BseGI	GGATG	1 cut(s)	566
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMI	GCAATG	1 cut(s)	552
BseMII	CTCAG	1 cut(s)	585
BseNI	ACTGG	1 cut(s)	387
BseXI	GCAGC	6 cut(s)	172, 220, 289, 442, 479, 587
BshFI	GGCC	2 cut(s)	253, 516
BsiSI	CCGG	1 cut(s)	338
BslFI	GGGAC	1 cut(s)	609
BslI	CCNNNNNNNGG	1 cut(s)	275
BsmFI	GGGAC	1 cut(s)	609
BsnI	GGCC	2 cut(s)	253, 516
BspACI	CCGC	1 cut(s)	596
BspANI	GGCC	2 cut(s)	253, 516
BspCNI	CTCAG	1 cut(s)	584
BspLI	GGNNCC	3 cut(s)	435, 475, 625
BspMAI	CTGCAG	1 cut(s)	676
BspMI	ACCTGC	1 cut(s)	461
BspQI	GCTCTTC	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	552
BsrFI	RCCGGY	1 cut(s)	337
BsrI	ACTGG	1 cut(s)	387
BssAI	RCCGGY	1 cut(s)	337
BssECI	CCNNGG	1 cut(s)	248
BssSI	CACGAG	1 cut(s)	639
BssT1I	CCWWGG	1 cut(s)	248
Bst2BI	CACGAG	1 cut(s)	639
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	1 cut(s)	683
Bst6I	CTCTTC	2 cut(s)	29, 528
BstC8I	GCNNGC	4 cut(s)	190, 307, 311, 315
BstDEI	CTNAG	3 cut(s)	15, 140, 571
BstF5I	GGATG	1 cut(s)	566
BstMWI	GCNNNNNNNGC	2 cut(s)	464, 674
BstNI	CCWGG	1 cut(s)	276
BstSCI	CCNGG	1 cut(s)	274
BstSFI	CTRYAG	1 cut(s)	672
BstV1I	GCAGC	6 cut(s)	172, 220, 289, 442, 479, 587
BsuRI	GGCC	2 cut(s)	253, 516
BtsCI	GGATG	1 cut(s)	566
BtsI	GCAGTG	1 cut(s)	567
BtsIMutI	CAGTG	1 cut(s)	567
BveI	ACCTGC	1 cut(s)	461
Cac8I	GCNNGC	4 cut(s)	190, 307, 311, 315
CaiI	CAGNNNCTG	1 cut(s)	581
Cfr10I	RCCGGY	1 cut(s)	337
Cfr13I	GGNCC	2 cut(s)	406, 623
CsiI	ACCWGGT	1 cut(s)	274
Csp6I	GTAC	2 cut(s)	73, 390
CviAII	CATG	1 cut(s)	107
CviQI	GTAC	2 cut(s)	73, 390
DdeI	CTNAG	3 cut(s)	15, 140, 571
EaeI	YGGCCR	1 cut(s)	514
Eam1104I	CTCTTC	2 cut(s)	29, 528
EarI	CTCTTC	2 cut(s)	29, 528
EciI	GGCGGA	1 cut(s)	585
Eco130I	CCWWGG	1 cut(s)	248
Eco147I	AGGCCT	1 cut(s)	253
Eco47I	GGWCC	2 cut(s)	406, 623
Eco57I	CTGAAG	2 cut(s)	552, 576
EcoO109I	RGGNCCY	1 cut(s)	623
EcoRII	CCWGG	1 cut(s)	274
EcoT14I	CCWWGG	1 cut(s)	248
ErhI	CCWWGG	1 cut(s)	248
FaeI	CATG	1 cut(s)	110
FaiI	YATR	9 cut(s)	6, 32, 34, 69, 94, 108, 172, 195, 228
FalI	AAGNNNNNCTT	2 cut(s)	8, 40
FaqI	GGGAC	1 cut(s)	609
FatI	CATG	1 cut(s)	106
Fnu4HI	GCNGC	7 cut(s)	186, 234, 303, 456, 468, 576, 675
FokI	GGATG	1 cut(s)	553
Fsp4HI	GCNGC	7 cut(s)	186, 234, 303, 456, 468, 576, 675
FspBI	CTAG	2 cut(s)	147, 399
GluI	GCNGC	7 cut(s)	186, 234, 303, 456, 468, 576, 675
GsuI	CTGGAG	1 cut(s)	303
HaeIII	GGCC	2 cut(s)	253, 516
HapII	CCGG	1 cut(s)	338
Hin1II	CATG	1 cut(s)	110
HinfI	GANTC	2 cut(s)	77, 506
HpaII	CCGG	1 cut(s)	338
HphI	GGTGA	1 cut(s)	167
Hpy166II	GTNNAC	1 cut(s)	73
Hpy188I	TCNGA	1 cut(s)	201
Hpy8I	GTNNAC	1 cut(s)	73
HpyAV	CCTTC	2 cut(s)	91, 614
HpyCH4III	ACNGT	1 cut(s)	683
HpyCH4V	TGCA	6 cut(s)	101, 188, 223, 550, 668, 674
HpyF10VI	GCNNNNNNNGC	2 cut(s)	464, 674
HpyF3I	CTNAG	3 cut(s)	15, 140, 571
Hsp92II	CATG	1 cut(s)	110
LguI	GCTCTTC	1 cut(s)	29
LmnI	GCTCC	4 cut(s)	322, 328, 439, 502
Lsp1109I	GCAGC	6 cut(s)	172, 220, 289, 442, 479, 587
LweI	GCATC	2 cut(s)	653, 677
MabI	ACCWGGT	1 cut(s)	274
MaeI	CTAG	2 cut(s)	147, 399
MaeIII	GTNAC	1 cut(s)	562
MboII	GAAGA	4 cut(s)	16, 377, 387, 545
MlsI	TGGCCA	1 cut(s)	516
MluNI	TGGCCA	1 cut(s)	516
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	4 cut(s)	264, 529, 535, 580
Mox20I	TGGCCA	1 cut(s)	516
MscI	TGGCCA	1 cut(s)	516
MseI	TTAA	1 cut(s)	650
MslI	CAYNNNNRTG	1 cut(s)	111
Msp20I	TGGCCA	1 cut(s)	516
MspI	CCGG	1 cut(s)	338
MspR9I	CCNGG	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	276
MwoI	GCNNNNNNNGC	2 cut(s)	464, 674
NlaIII	CATG	1 cut(s)	110
NlaIV	GGNNCC	3 cut(s)	435, 475, 625
NmuCI	GTSAC	1 cut(s)	562
PceI	AGGCCT	1 cut(s)	253
PciSI	GCTCTTC	1 cut(s)	29
PcsI	WCGNNNNNNNCGW	1 cut(s)	637
PfeI	GAWTC	2 cut(s)	77, 506
PkrI	GCNGC	7 cut(s)	187, 235, 304, 457, 469, 577, 676
PpuMI	RGGWCCY	1 cut(s)	623
Psp5II	RGGWCCY	1 cut(s)	623
Psp6I	CCWGG	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	3 cut(s)	435, 475, 625
PspPI	GGNCC	2 cut(s)	406, 623
PspPPI	RGGWCCY	1 cut(s)	623
PstI	CTGCAG	1 cut(s)	676
PstNI	CAGNNNCTG	1 cut(s)	581
RsaI	GTAC	2 cut(s)	74, 391
RsaNI	GTAC	2 cut(s)	73, 390
RseI	CAYNNNNRTG	1 cut(s)	111
SapI	GCTCTTC	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	650
SatI	GCNGC	7 cut(s)	186, 234, 303, 456, 468, 576, 675
Sau96I	GGNCC	2 cut(s)	406, 623
ScrFI	CCNGG	1 cut(s)	276
SexAI	ACCWGGT	1 cut(s)	274
SfaNI	GCATC	2 cut(s)	653, 677
SfcI	CTRYAG	1 cut(s)	672
SinI	GGWCC	2 cut(s)	406, 623
SmiMI	CAYNNNNRTG	1 cut(s)	111
SseBI	AGGCCT	1 cut(s)	253
SsiI	CCGC	1 cut(s)	596
SspMI	CTAG	2 cut(s)	147, 399
StuI	AGGCCT	1 cut(s)	253
StyD4I	CCNGG	1 cut(s)	274
StyI	CCWWGG	1 cut(s)	248
TaaI	ACNGT	1 cut(s)	683
TatI	WGTACW	1 cut(s)	389
TfiI	GAWTC	2 cut(s)	77, 506
Tru1I	TTAA	1 cut(s)	650
Tru9I	TTAA	1 cut(s)	650
TscAI	CASTG	1 cut(s)	567
TseFI	GTSAC	1 cut(s)	562
TseI	GCWGC	7 cut(s)	185, 233, 302, 455, 467, 575, 674
Tsp45I	GTSAC	1 cut(s)	562
TspDTI	ATGAA	1 cut(s)	16
TspRI	CASTG	1 cut(s)	567
VpaK11BI	GGWCC	2 cut(s)	406, 623
XspI	CTAG	2 cut(s)	147, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.