FvH4_2g38590

HVA22-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0004929
Physical Location & Seq
Reverse (-)
27876285 .. 27879212
2928 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g38590.t1

Sequence Viewer

Length: 891 bp
ATGATAGGATCATTTCTTACCAGAGGACTGGTGATGATCCTTGGCTATGCTTATCCAGCCTATGAGTGCTACAAAACTGTTGAGAAGAACAAGCCAGAGATTGAGCAACTTCGCTTTTGGTGCCAGTATTGGATTTTGGTGGCTGTTTTGACAGTATGCGAGAGAGTTGGTGATACTTTTGTTTCATGGGTTCCAATGTATAGTGAAGCTAAGTTGCTTTTCATCATATATCTGTGGTTCCCTAAAACAAAGGGAACGACTTATGTGTATGATTCCTTCTTTAGACCATATCTCGCAAAGCATGAGAACGATATTGATAGGAACTTGTTGGAACTAAGAACTAGGGCTGGTGATATCGCTATTGTATATTGGCAAAGAGCTGCAAGCTATGGTCAGACCAGAGTATTTGATATTTTACAGTATGTTGCTGCACAATCAACACCAACACCAAGGCCTCGCCCTGCTCAGCCACAACCAGGTGTTAGGGGTCGCCAACCCCCTGCTGCTCGCCAGCCTGCTCCAGCTCCAAATCGCCAACCAGCTGCAACGCCGCAATCTCAACCCGAAGAACCACCATCTCCCACGTCCAGTACAACTTCTAGTAAGGACCAAAGAGAGATATTAGAAGCATTGGCTCCTTTACCAAAGCCTAAAGCTGCACCCCAAGCAGCAGGTTCTAATACTCAGAAAACACCAGCTCCACCTGAATCATCTAGCCAATCTAAACCAGCTGAAGAGGTGGAGGCAATGCAGGTTGATGCAGTGACGTCCACTGCAGCAACTGAAAGTACAATTCCTCCCCCAAAAGATACACTAATGGAAGGTACCATTCGGCAAACCCGAGCATCGTTAAGGAAAACCCGTTCTACAGTAGCAGGATCAAGCCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TB2_DP1_HVA22

Protein Analysis

297

Amino Acids

32.89

Weight (kDa)

9.34

Isoelectric Point (pI)

61.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TB2_DP1_HVA22 PF03134 19 - 97 4.6e-26 TB2/DP1, HVA22 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 770
Acc36I ACCTGC 2 cut(s) 662, 742
Acc65I GGTACC 1 cut(s) 824
AccB1I GGYRCC 2 cut(s) 120, 824
AciI CCGC 1 cut(s) 551
AclWI GGATC 3 cut(s) 16, 31, 886
AcuI CTGAAG 1 cut(s) 753
AcyI GRCGYC 1 cut(s) 767
AfaI GTAC 3 cut(s) 592, 790, 826
AfiI CCNNNNNNNGG 1 cut(s) 476
AjiI CACGTC 1 cut(s) 585
AjnI CCWGG 1 cut(s) 475
AloI GAACNNNNNNTCC 2 cut(s) 847, 879
AluBI AGCT 8 cut(s) 209, 380, 387, 524, 542, 656, 698, 731
AluI AGCT 8 cut(s) 209, 380, 387, 524, 542, 656, 698, 731
AlwI GGATC 3 cut(s) 16, 31, 886
AlwNI CAGNNNCTG 1 cut(s) 782
Ama87I CYCGRG 1 cut(s) 840
AoxI GGCC 1 cut(s) 452
ApeKI GCWGC 7 cut(s) 380, 428, 503, 542, 656, 668, 776
Asp718I GGTACC 1 cut(s) 824
AspS9I GGNCC 1 cut(s) 607
AsuHPI GGTGA 3 cut(s) 43, 182, 362
AvaI CYCGRG 1 cut(s) 840
AvaII GGWCC 1 cut(s) 607
BaeI ACNNNNGTAYC 2 cut(s) 165, 198
BanI GGYRCC 2 cut(s) 120, 824
BarI GAAGNNNNNNTAC 2 cut(s) 260, 292
BbvI GCAGC 7 cut(s) 367, 415, 490, 529, 643, 680, 788
BccI CCATC 1 cut(s) 583
BceAI ACGGC 1 cut(s) 870
BciT130I CCWGG 1 cut(s) 477
BfaI CTAG 3 cut(s) 342, 600, 714
BfmI CTRYAG 2 cut(s) 774, 867
BfuAI ACCTGC 2 cut(s) 662, 742
BisI GCNGC 8 cut(s) 381, 429, 504, 543, 551, 657, 669, 777
BlpI GCTNAGC 1 cut(s) 465
BlsI GCNGC 8 cut(s) 382, 430, 505, 544, 552, 658, 670, 778
Bme1390I CCNGG 1 cut(s) 477
Bme18I GGWCC 1 cut(s) 607
BmeT110I CYCGRG 1 cut(s) 840
BmgBI CACGTC 1 cut(s) 585
BmgT120I GGNCC 1 cut(s) 607
BmiI GGNNCC 5 cut(s) 122, 192, 239, 636, 826
BmrFI CCNGG 1 cut(s) 477
BmsI GCATC 2 cut(s) 748, 854
BpmI CTGGAG 1 cut(s) 504
Bpu1102I GCTNAGC 1 cut(s) 465
BsaHI GRCGYC 1 cut(s) 767
BsaJI CCNNGG 2 cut(s) 40, 449
BsaXI ACNNNNNCTCC 4 cut(s) 682, 712, 781, 811
Bsc4I CCNNNNNNNGG 1 cut(s) 476
Bse1I ACTGG 3 cut(s) 33, 124, 588
Bse3DI GCAATG 1 cut(s) 753
BseBI CCWGG 1 cut(s) 477
BseDI CCNNGG 2 cut(s) 40, 449
BseLI CCNNNNNNNGG 1 cut(s) 476
BseMI GCAATG 1 cut(s) 753
BseMII CTCAG 2 cut(s) 479, 698
BseNI ACTGG 3 cut(s) 33, 124, 588
BseXI GCAGC 7 cut(s) 367, 415, 490, 529, 643, 680, 788
BsgI GTGCAG 2 cut(s) 414, 642
BshFI GGCC 1 cut(s) 454
BshNI GGYRCC 2 cut(s) 120, 824
BsiHKCI CYCGRG 1 cut(s) 840
BslI CCNNNNNNNGG 1 cut(s) 476
BsnI GGCC 1 cut(s) 454
BsoBI CYCGRG 1 cut(s) 840
Bsp143I GATC 3 cut(s) 8, 36, 878
Bsp1720I GCTNAGC 1 cut(s) 465
BspACI CCGC 1 cut(s) 551
BspANI GGCC 1 cut(s) 454
BspCNI CTCAG 2 cut(s) 478, 697
BspLI GGNNCC 5 cut(s) 122, 192, 239, 636, 826
BspMAI CTGCAG 1 cut(s) 778
BspMI ACCTGC 2 cut(s) 662, 742
BspPI GGATC 3 cut(s) 16, 31, 886
BspT107I GGYRCC 2 cut(s) 120, 824
BsrDI GCAATG 1 cut(s) 753
BsrI ACTGG 3 cut(s) 33, 124, 588
BssECI CCNNGG 2 cut(s) 40, 449
BssMI GATC 3 cut(s) 8, 36, 878
BssNI GRCGYC 1 cut(s) 767
BssT1I CCWWGG 2 cut(s) 40, 449
Bst2UI CCWGG 1 cut(s) 477
Bst4CI ACNGT 4 cut(s) 79, 154, 420, 871
Bst6I CTCTTC 1 cut(s) 729
BstACI GRCGYC 1 cut(s) 767
BstC8I GCNNGC 4 cut(s) 385, 508, 512, 516
BstDEI CTNAG 4 cut(s) 210, 335, 465, 684
BstKTI GATC 3 cut(s) 11, 39, 881
BstMBI GATC 3 cut(s) 8, 36, 878
BstMWI GCNNNNNNNGC 3 cut(s) 56, 120, 665
BstNI CCWGG 1 cut(s) 477
BstSCI CCNGG 1 cut(s) 475
BstSFI CTRYAG 2 cut(s) 774, 867
BstV1I GCAGC 7 cut(s) 367, 415, 490, 529, 643, 680, 788
BstXI CCANNNNNNTGG 1 cut(s) 28
BsuRI GGCC 1 cut(s) 454
BtrI CACGTC 1 cut(s) 585
BtsI GCAGTG 2 cut(s) 768, 771
BtsIMutI CAGTG 2 cut(s) 768, 771
BveI ACCTGC 2 cut(s) 662, 742
Cac8I GCNNGC 4 cut(s) 385, 508, 512, 516
CaiI CAGNNNCTG 1 cut(s) 782
Cfr13I GGNCC 1 cut(s) 607
CsiI ACCWGGT 1 cut(s) 475
Csp6I GTAC 3 cut(s) 591, 789, 825
CviAII CATG 2 cut(s) 186, 302
CviQI GTAC 3 cut(s) 591, 789, 825
DdeI CTNAG 4 cut(s) 210, 335, 465, 684
DpnI GATC 3 cut(s) 10, 38, 880
DpnII GATC 3 cut(s) 8, 36, 878
Eam1104I CTCTTC 1 cut(s) 729
EarI CTCTTC 1 cut(s) 729
Eco130I CCWWGG 2 cut(s) 40, 449
Eco147I AGGCCT 1 cut(s) 454
Eco32I GATATC 1 cut(s) 355
Eco47I GGWCC 1 cut(s) 607
Eco57I CTGAAG 1 cut(s) 753
Eco88I CYCGRG 1 cut(s) 840
EcoRII CCWGG 1 cut(s) 475
EcoRV GATATC 1 cut(s) 355
EcoT14I CCWWGG 2 cut(s) 40, 449
ErhI CCWWGG 2 cut(s) 40, 449
FaeI CATG 2 cut(s) 189, 305
FatI CATG 2 cut(s) 185, 301
Fnu4HI GCNGC 8 cut(s) 381, 429, 504, 543, 551, 657, 669, 777
Fsp4HI GCNGC 8 cut(s) 381, 429, 504, 543, 551, 657, 669, 777
FspBI CTAG 3 cut(s) 342, 600, 714
GluI GCNGC 8 cut(s) 381, 429, 504, 543, 551, 657, 669, 777
GsuI CTGGAG 1 cut(s) 504
HaeIII GGCC 1 cut(s) 454
Hin1I GRCGYC 1 cut(s) 767
Hin1II CATG 2 cut(s) 189, 305
HinfI GANTC 2 cut(s) 272, 707
HphI GGTGA 3 cut(s) 43, 182, 362
Hpy166II GTNNAC 1 cut(s) 771
Hpy188I TCNGA 2 cut(s) 396, 687
Hpy8I GTNNAC 1 cut(s) 771
HpyAV CCTTC 2 cut(s) 286, 815
HpyCH4III ACNGT 4 cut(s) 79, 154, 420, 871
HpyCH4IV ACGT 2 cut(s) 584, 767
HpyCH4V TGCA 7 cut(s) 383, 431, 545, 659, 751, 761, 776
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 120, 665
HpyF3I CTNAG 4 cut(s) 210, 335, 465, 684
HpySE526I ACGT 2 cut(s) 584, 767
Hsp92I GRCGYC 1 cut(s) 767
Hsp92II CATG 2 cut(s) 189, 305
KpnI GGTACC 1 cut(s) 828
Kzo9I GATC 3 cut(s) 8, 36, 878
LmnI GCTCC 4 cut(s) 523, 529, 640, 703
Lsp1109I GCAGC 7 cut(s) 367, 415, 490, 529, 643, 680, 788
LweI GCATC 2 cut(s) 748, 854
MabI ACCWGGT 1 cut(s) 475
MaeI CTAG 3 cut(s) 342, 600, 714
MaeII ACGT 2 cut(s) 584, 767
MaeIII GTNAC 1 cut(s) 763
MalI GATC 3 cut(s) 10, 38, 880
MboI GATC 3 cut(s) 8, 36, 878
MboII GAAGA 3 cut(s) 97, 578, 746
MluCI AATT 1 cut(s) 792
MmeI TCCRAC 1 cut(s) 309
MnlI CCTC 5 cut(s) 17, 465, 730, 736, 807
MseI TTAA 1 cut(s) 851
MspA1I CMGCKG 2 cut(s) 542, 731
MspR9I CCNGG 1 cut(s) 477
MvaI CCWGG 1 cut(s) 477
MwoI GCNNNNNNNGC 3 cut(s) 56, 120, 665
NdeII GATC 3 cut(s) 8, 36, 878
NlaIII CATG 2 cut(s) 189, 305
NlaIV GGNNCC 5 cut(s) 122, 192, 239, 636, 826
NmuCI GTSAC 1 cut(s) 763
PceI AGGCCT 1 cut(s) 454
PcsI WCGNNNNNNNCGW 1 cut(s) 838
PfeI GAWTC 2 cut(s) 272, 707
PkrI GCNGC 8 cut(s) 382, 430, 505, 544, 552, 658, 670, 778
Psp6I CCWGG 1 cut(s) 475
PspGI CCWGG 1 cut(s) 475
PspN4I GGNNCC 5 cut(s) 122, 192, 239, 636, 826
PspPI GGNCC 1 cut(s) 607
PstI CTGCAG 1 cut(s) 778
PstNI CAGNNNCTG 1 cut(s) 782
PvuII CAGCTG 2 cut(s) 542, 731
RsaI GTAC 3 cut(s) 592, 790, 826
RsaNI GTAC 3 cut(s) 591, 789, 825
SaqAI TTAA 1 cut(s) 851
SatI GCNGC 8 cut(s) 381, 429, 504, 543, 551, 657, 669, 777
Sau3AI GATC 3 cut(s) 8, 36, 878
Sau96I GGNCC 1 cut(s) 607
ScrFI CCNGG 1 cut(s) 477
SexAI ACCWGGT 1 cut(s) 475
SfaNI GCATC 2 cut(s) 748, 854
SfcI CTRYAG 2 cut(s) 774, 867
SinI GGWCC 1 cut(s) 607
Sse9I AATT 1 cut(s) 792
SseBI AGGCCT 1 cut(s) 454
SsiI CCGC 1 cut(s) 551
SspMI CTAG 3 cut(s) 342, 600, 714
StuI AGGCCT 1 cut(s) 454
StyD4I CCNGG 1 cut(s) 475
StyI CCWWGG 2 cut(s) 40, 449
TaaI ACNGT 4 cut(s) 79, 154, 420, 871
TaiI ACGT 2 cut(s) 587, 770
TasI AATT 1 cut(s) 792
TatI WGTACW 2 cut(s) 590, 788
TauI GCSGC 1 cut(s) 553
TfiI GAWTC 2 cut(s) 272, 707
Tru1I TTAA 1 cut(s) 851
Tru9I TTAA 1 cut(s) 851
TscAI CASTG 2 cut(s) 768, 778
TseFI GTSAC 1 cut(s) 763
TseI GCWGC 7 cut(s) 380, 428, 503, 542, 656, 668, 776
Tsp45I GTSAC 1 cut(s) 763
TspDTI ATGAA 2 cut(s) 174, 211
TspRI CASTG 2 cut(s) 768, 778
VpaK11BI GGWCC 1 cut(s) 607
XspI CTAG 3 cut(s) 342, 600, 714
ZraI GACGTC 1 cut(s) 768
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.