Rorug06G0316400

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0004929
Physical Location & Seq
Forward (+)
46775203 .. 46779058
3856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0316400.1

Sequence Viewer

Length: 942 bp
ATGGCTTCGTCTCTTAAATCTGCGACTGGTTTTCTTCACCTGAAGAAGCCTCAAAGCCCATTGTTTTTCCGTTCCCTGGCTCAAAAGTCCACCCTTTCATTCAAGAAATTTACTCCAATGGCTTCTCTGACCACCACCAACACCACCGTCGGCCTCTCCAAAACTTTCATCAAACTGAAGGAGCAAGGCAAGGTTGCATTAATCCCTTACATTACTGCCGGTGATCCTGATCTATCGGTCACCGCAGAAGCATTGAAGGTCCTGGATTCTTGTGGATCGGACATAATTGAATTAGGTGTGCCATACTCTGATCCATTAGCAGATGGGCCAGTTATACAGGCTGCAGCCACTCGTGCCTTGGCAAGAGGGACCAATTTGAATTCAATCCTGGCAATGTTGAAGGAGGTGATTCCCAAACTGTCCTGCCCAATTGCTCTCTTCACATACTACAATCCTATTTTGAAGCGTGGTGTTGGAGAGTTCATGTCCATCATTAAAGACGTCGGTGTACATGGACTTGTGGTTCCAGATGTTCCATTGGAAGAGACGGACATTCTGAGAAAGGAAGCCTTGAAAAATAATATTGAATTGGTATTACTAACTACACCCACCACTCCAATGGAGCGAATGAAGGCCATTGCTGAAGCTTCCGAAGGGTTTTTGTACCTGGTGAGCTCAATTGGAGTTACAGGGGCCCGGGCATCTGTGAATGAACGAGTTCCTGCCCTTTTAAAGGAAATTAAAGAGGCTACATCAAAGCCCGTAGCTGTTGGTTTTGGCATCTCAAAGCCTGAACAAGCTAAACAGGTAGCGGGGTGGGGAGCTGATGGTGTCATTGTTGGTAGCGCAATTGTGAAGCTGTTGGGTGATGCCAAAACTCCCGAGGAAGGGTTGAAGGAACTGGAAATTTTCACCAAGTCTCTGAAATCTGCACTCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006082 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006355 GO:0006725 GO:0006790 GO:0006807 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0022402 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032502 GO:0032989 GO:0034641 GO:0034645 GO:0042023 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044786 GO:0046483 GO:0046982 GO:0046983 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051301 GO:0051302 GO:0051782 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097159 GO:0140110 GO:1901135 GO:1901360 GO:1901363 GO:1901564 GO:1901576 GO:1901657 GO:1903506 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko01522 ko04110 ko04218 ko04934 ko05161 ko05166 ko05167 ko05200 ko05206 ko05212 ko05214 ko05215 ko05218 ko05219 ko05220 ko05222 ko05223 ko05224 ko05225 ko05226 map01522 map04110 map04218 map04934 map05161 map05166 map05167 map05200 map05206 map05212 map05214 map05215 map05218 map05219 map05220 map05222 map05223 map05224 map05225 map05226
Pfam Domains
Protein Families
E2F_CC-MB E2F_TDP

Protein Analysis

313

Amino Acids

33.31

Weight (kDa)

9.0

Isoelectric Point (pI)

26.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trp_syntA PF00290 56 - 311 7.2e-95 Tryptophan synthase alpha chain
His_biosynth PF00977 229 - 286 3.9e-06 Histidine biosynthesis protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 504
AciI CCGC 2 cut(s) 243, 812
AclWI GGATC 3 cut(s) 218, 283, 305
AcsI RAATTY 3 cut(s) 107, 379, 906
AcuI CTGAAG 3 cut(s) 62, 197, 663
AcyI GRCGYC 1 cut(s) 501
AfaI GTAC 2 cut(s) 510, 665
AfiI CCNNNNNNNGG 4 cut(s) 76, 733, 887, 888
AjnI CCWGG 4 cut(s) 75, 261, 387, 666
AloI GAACNNNNNNTCC 2 cut(s) 507, 539
AluBI AGCT 6 cut(s) 647, 675, 767, 800, 824, 859
AluI AGCT 6 cut(s) 647, 675, 767, 800, 824, 859
Alw21I GWGCWC 1 cut(s) 677
Alw26I GTCTC 3 cut(s) 15, 539, 924
AlwI GGATC 3 cut(s) 218, 283, 305
Ama87I CYCGRG 2 cut(s) 696, 881
AoxI GGCC 4 cut(s) 151, 326, 633, 693
ApaI GGGCCC 1 cut(s) 697
ApeKI GCWGC 2 cut(s) 341, 344
ApoI RAATTY 3 cut(s) 107, 379, 906
AseI ATTAAT 1 cut(s) 200
Asp700I GAANNNNTTC 1 cut(s) 717
AspLEI GCGC 1 cut(s) 848
AspS9I GGNCC 5 cut(s) 259, 326, 369, 693, 694
AsuC2I CCSGG 2 cut(s) 697, 698
AsuHPI GGTGA 7 cut(s) 29, 232, 233, 418, 682, 878, 904
AvaI CYCGRG 2 cut(s) 696, 881
AvaII GGWCC 2 cut(s) 259, 369
BaeGI GKGCMC 1 cut(s) 697
BanII GRGCYC 2 cut(s) 677, 697
BauI CACGAG 1 cut(s) 351
Bbv12I GWGCWC 1 cut(s) 677
BbvI GCAGC 2 cut(s) 328, 356
BccI CCATC 3 cut(s) 317, 497, 821
BciT130I CCWGG 4 cut(s) 77, 263, 389, 668
BcnI CCSGG 2 cut(s) 697, 698
BcoDI GTCTC 3 cut(s) 15, 539, 924
BfmI CTRYAG 1 cut(s) 342
BisI GCNGC 2 cut(s) 342, 345
BlsI GCNGC 2 cut(s) 343, 346
Bme1390I CCNGG 6 cut(s) 77, 263, 389, 668, 697, 698
Bme18I GGWCC 2 cut(s) 259, 369
BmeT110I CYCGRG 2 cut(s) 696, 881
BmgT120I GGNCC 5 cut(s) 259, 326, 369, 693, 694
BmiI GGNNCC 4 cut(s) 370, 525, 694, 695
BmrFI CCNGG 6 cut(s) 77, 263, 389, 668, 697, 698
BmsI GCATC 3 cut(s) 710, 789, 859
BpuMI CCSGG 2 cut(s) 697, 698
BsaBI GATNNNNATC 1 cut(s) 228
BsaHI GRCGYC 1 cut(s) 501
BsaJI CCNNGG 4 cut(s) 75, 357, 696, 882
Bsc4I CCNNNNNNNGG 4 cut(s) 76, 733, 887, 888
Bse118I RCCGGY 1 cut(s) 218
Bse1I ACTGG 3 cut(s) 31, 329, 906
Bse3DI GCAATG 2 cut(s) 399, 636
Bse8I GATNNNNATC 1 cut(s) 228
BseBI CCWGG 4 cut(s) 77, 263, 389, 668
BseDI CCNNGG 4 cut(s) 75, 357, 696, 882
BseJI GATNNNNATC 1 cut(s) 228
BseLI CCNNNNNNNGG 4 cut(s) 76, 733, 887, 888
BseMI GCAATG 2 cut(s) 399, 636
BseMII CTCAG 1 cut(s) 548
BseNI ACTGG 3 cut(s) 31, 329, 906
BseSI GKGCMC 1 cut(s) 697
BseXI GCAGC 2 cut(s) 328, 356
BsgI GTGCAG 1 cut(s) 915
BshFI GGCC 4 cut(s) 153, 328, 635, 695
BsiHKAI GWGCWC 1 cut(s) 677
BsiHKCI CYCGRG 2 cut(s) 696, 881
BsiSI CCGG 2 cut(s) 219, 697
BslFI GGGAC 1 cut(s) 382
BslI CCNNNNNNNGG 4 cut(s) 76, 733, 887, 888
BsmAI GTCTC 3 cut(s) 15, 539, 924
BsmBI CGTCTC 2 cut(s) 15, 539
BsmFI GGGAC 1 cut(s) 382
BsnI GGCC 4 cut(s) 153, 328, 635, 695
BsoBI CYCGRG 2 cut(s) 696, 881
Bsp120I GGGCCC 1 cut(s) 693
Bsp1286I GDGCHC 2 cut(s) 677, 697
Bsp1407I TGTACA 1 cut(s) 508
Bsp143I GATC 4 cut(s) 223, 229, 275, 310
BspACI CCGC 2 cut(s) 243, 812
BspANI GGCC 4 cut(s) 153, 328, 635, 695
BspCNI CTCAG 1 cut(s) 549
BspLI GGNNCC 4 cut(s) 370, 525, 694, 695
BspMAI CTGCAG 1 cut(s) 346
BspPI GGATC 3 cut(s) 218, 283, 305
BsrDI GCAATG 2 cut(s) 399, 636
BsrFI RCCGGY 1 cut(s) 218
BsrGI TGTACA 1 cut(s) 508
BsrI ACTGG 3 cut(s) 31, 329, 906
BssAI RCCGGY 1 cut(s) 218
BssECI CCNNGG 4 cut(s) 75, 357, 696, 882
BssMI GATC 4 cut(s) 223, 229, 275, 310
BssNI GRCGYC 1 cut(s) 501
BssSI CACGAG 1 cut(s) 351
BssT1I CCWWGG 1 cut(s) 357
Bst2BI CACGAG 1 cut(s) 351
Bst2UI CCWGG 4 cut(s) 77, 263, 389, 668
Bst4CI ACNGT 2 cut(s) 148, 420
Bst6I CTCTTC 2 cut(s) 443, 537
BstACI GRCGYC 1 cut(s) 501
BstAUI TGTACA 1 cut(s) 508
BstDEI CTNAG 1 cut(s) 557
BstEII GGTNACC 1 cut(s) 238
BstENI CCTNNNNNAGG 1 cut(s) 731
BstHHI GCGC 1 cut(s) 848
BstKTI GATC 4 cut(s) 226, 232, 278, 313
BstMAI GTCTC 3 cut(s) 15, 539, 924
BstMBI GATC 4 cut(s) 223, 229, 275, 310
BstMWI GCNNNNNNNGC 1 cut(s) 353
BstNI CCWGG 4 cut(s) 77, 263, 389, 668
BstPI GGTNACC 1 cut(s) 238
BstSCI CCNGG 6 cut(s) 75, 261, 387, 666, 695, 696
BstSFI CTRYAG 1 cut(s) 342
BstSLI GKGCMC 1 cut(s) 697
BstV1I GCAGC 2 cut(s) 328, 356
BstXI CCANNNNNNTGG 1 cut(s) 619
BsuRI GGCC 4 cut(s) 153, 328, 635, 695
CfoI GCGC 1 cut(s) 848
Cfr10I RCCGGY 1 cut(s) 218
Cfr13I GGNCC 5 cut(s) 259, 326, 369, 693, 694
Cfr9I CCCGGG 1 cut(s) 696
CsiI ACCWGGT 1 cut(s) 666
Csp6I GTAC 2 cut(s) 509, 664
CviAII CATG 2 cut(s) 484, 512
CviQI GTAC 2 cut(s) 509, 664
DdeI CTNAG 1 cut(s) 557
DpnI GATC 4 cut(s) 225, 231, 277, 312
DpnII GATC 4 cut(s) 223, 229, 275, 310
DraI TTTAAA 1 cut(s) 732
Eam1104I CTCTTC 2 cut(s) 443, 537
EarI CTCTTC 2 cut(s) 443, 537
Ecl136II GAGCTC 1 cut(s) 675
Eco130I CCWWGG 1 cut(s) 357
Eco24I GRGCYC 2 cut(s) 677, 697
Eco47I GGWCC 2 cut(s) 259, 369
Eco53kI GAGCTC 1 cut(s) 675
Eco57I CTGAAG 3 cut(s) 62, 197, 663
Eco88I CYCGRG 2 cut(s) 696, 881
Eco91I GGTNACC 1 cut(s) 238
EcoICRI GAGCTC 1 cut(s) 675
EcoNI CCTNNNNNAGG 1 cut(s) 731
EcoO109I RGGNCCY 2 cut(s) 259, 693
EcoO65I GGTNACC 1 cut(s) 238
EcoRI GAATTC 1 cut(s) 379
EcoRII CCWGG 4 cut(s) 75, 261, 387, 666
EcoT14I CCWWGG 1 cut(s) 357
EcoT38I GRGCYC 2 cut(s) 677, 697
ErhI CCWWGG 1 cut(s) 357
Esp3I CGTCTC 2 cut(s) 15, 539
FaeI CATG 2 cut(s) 487, 515
FaiI YATR 6 cut(s) 284, 304, 335, 445, 485, 513
FalI AAGNNNNNCTT 2 cut(s) 554, 586
FaqI GGGAC 1 cut(s) 382
FatI CATG 2 cut(s) 483, 511
FauI CCCGC 1 cut(s) 805
Fnu4HI GCNGC 2 cut(s) 342, 345
FriOI GRGCYC 2 cut(s) 677, 697
Fsp4HI GCNGC 2 cut(s) 342, 345
GlaI GCGC 1 cut(s) 847
GluI GCNGC 2 cut(s) 342, 345
HaeIII GGCC 4 cut(s) 153, 328, 635, 695
HapII CCGG 2 cut(s) 219, 697
HhaI GCGC 1 cut(s) 848
Hin1I GRCGYC 1 cut(s) 501
Hin1II CATG 2 cut(s) 487, 515
Hin6I GCGC 1 cut(s) 846
HinP1I GCGC 1 cut(s) 846
HindIII AAGCTT 1 cut(s) 645
HinfI GANTC 2 cut(s) 266, 409
HpaII CCGG 2 cut(s) 219, 697
HphI GGTGA 7 cut(s) 29, 232, 233, 418, 682, 878, 904
Hpy166II GTNNAC 2 cut(s) 90, 509
Hpy188I TCNGA 6 cut(s) 129, 280, 310, 558, 652, 924
Hpy188III TCNNGA 4 cut(s) 103, 227, 527, 881
Hpy8I GTNNAC 2 cut(s) 90, 509
Hpy99I CGWCG 2 cut(s) 152, 506
HpyAV CCTTC 7 cut(s) 172, 250, 394, 625, 647, 881, 889
HpyCH4III ACNGT 2 cut(s) 148, 420
HpyCH4IV ACGT 1 cut(s) 501
HpyCH4V TGCA 3 cut(s) 197, 344, 932
HpyF10VI GCNNNNNNNGC 1 cut(s) 353
HpyF3I CTNAG 1 cut(s) 557
HpySE526I ACGT 1 cut(s) 501
Hsp92I GRCGYC 1 cut(s) 501
Hsp92II CATG 2 cut(s) 487, 515
HspAI GCGC 1 cut(s) 846
Kzo9I GATC 4 cut(s) 223, 229, 275, 310
LmnI GCTCC 3 cut(s) 181, 622, 821
Lsp1109I GCAGC 2 cut(s) 328, 356
LweI GCATC 3 cut(s) 710, 789, 859
MabI ACCWGGT 1 cut(s) 666
MaeII ACGT 1 cut(s) 501
MaeIII GTNAC 2 cut(s) 238, 685
MalI GATC 4 cut(s) 225, 231, 277, 312
MboI GATC 4 cut(s) 223, 229, 275, 310
MboII GAAGA 4 cut(s) 26, 55, 430, 554
MfeI CAATTG 3 cut(s) 429, 678, 849
MhlI GDGCHC 2 cut(s) 677, 697
MmeI TCCRAC 1 cut(s) 454
MnlI CCTC 6 cut(s) 60, 164, 359, 397, 739, 877
MroXI GAANNNNTTC 1 cut(s) 717
MseI TTAA 5 cut(s) 15, 200, 495, 731, 741
MslI CAYNNNNRTG 1 cut(s) 617
MspI CCGG 2 cut(s) 219, 697
MspR9I CCNGG 6 cut(s) 77, 263, 389, 668, 697, 698
MunI CAATTG 3 cut(s) 429, 678, 849
MvaI CCWGG 4 cut(s) 77, 263, 389, 668
MwoI GCNNNNNNNGC 1 cut(s) 353
NciI CCSGG 2 cut(s) 697, 698
NdeII GATC 4 cut(s) 223, 229, 275, 310
NlaIII CATG 2 cut(s) 487, 515
NlaIV GGNNCC 4 cut(s) 370, 525, 694, 695
NmuCI GTSAC 1 cut(s) 238
PdmI GAANNNNTTC 1 cut(s) 717
PfeI GAWTC 2 cut(s) 266, 409
PfoI TCCNGGA 1 cut(s) 261
PkrI GCNGC 2 cut(s) 343, 346
PpuMI RGGWCCY 1 cut(s) 259
PshBI ATTAAT 1 cut(s) 200
Psp124BI GAGCTC 1 cut(s) 677
Psp5II RGGWCCY 1 cut(s) 259
Psp6I CCWGG 4 cut(s) 75, 261, 387, 666
PspEI GGTNACC 1 cut(s) 238
PspGI CCWGG 4 cut(s) 75, 261, 387, 666
PspN4I GGNNCC 4 cut(s) 370, 525, 694, 695
PspOMI GGGCCC 1 cut(s) 693
PspPI GGNCC 5 cut(s) 259, 326, 369, 693, 694
PspPPI RGGWCCY 1 cut(s) 259
PstI CTGCAG 1 cut(s) 346
RsaI GTAC 2 cut(s) 510, 665
RsaNI GTAC 2 cut(s) 509, 664
RseI CAYNNNNRTG 1 cut(s) 617
SacI GAGCTC 1 cut(s) 677
SaqAI TTAA 5 cut(s) 15, 200, 495, 731, 741
SatI GCNGC 2 cut(s) 342, 345
Sau3AI GATC 4 cut(s) 223, 229, 275, 310
Sau96I GGNCC 5 cut(s) 259, 326, 369, 693, 694
ScrFI CCNGG 6 cut(s) 77, 263, 389, 668, 697, 698
SduI GDGCHC 2 cut(s) 677, 697
SexAI ACCWGGT 1 cut(s) 666
SfaNI GCATC 3 cut(s) 710, 789, 859
SfcI CTRYAG 1 cut(s) 342
SinI GGWCC 2 cut(s) 259, 369
SmaI CCCGGG 1 cut(s) 698
SmiMI CAYNNNNRTG 1 cut(s) 617
SrfI GCCCGGGC 1 cut(s) 698
SsiI CCGC 2 cut(s) 243, 812
SspI AATATT 1 cut(s) 583
SstI GAGCTC 1 cut(s) 677
StyD4I CCNGG 6 cut(s) 75, 261, 387, 666, 695, 696
StyI CCWWGG 1 cut(s) 357
TaaI ACNGT 2 cut(s) 148, 420
TaiI ACGT 1 cut(s) 504
TaqII GACCGA 1 cut(s) 226
TatI WGTACW 1 cut(s) 508
TfiI GAWTC 2 cut(s) 266, 409
Tru1I TTAA 5 cut(s) 15, 200, 495, 731, 741
Tru9I TTAA 5 cut(s) 15, 200, 495, 731, 741
TseFI GTSAC 1 cut(s) 238
TseI GCWGC 2 cut(s) 341, 344
Tsp45I GTSAC 1 cut(s) 238
TspDTI ATGAA 5 cut(s) 87, 157, 472, 644, 726
TspGWI ACGGA 2 cut(s) 59, 563
TspMI CCCGGG 1 cut(s) 696
VpaK11BI GGWCC 2 cut(s) 259, 369
VspI ATTAAT 1 cut(s) 200
XagI CCTNNNNNAGG 1 cut(s) 731
XapI RAATTY 3 cut(s) 107, 379, 906
XcmI CCANNNNNNNNNTGG 2 cut(s) 355, 616
XmaI CCCGGG 1 cut(s) 696
XmnI GAANNNNTTC 1 cut(s) 717
ZraI GACGTC 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.