Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0004929

Physical Location & Seq

Genomic Coordinates Forward (+)

13348581 .. 13350685

Gene Structure 2105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g10090.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGTATTCTCCAACCTGTATTCAAGTCATTTCCGCCTGTTTTCTTACTTTAAAAGTCTTATTTAACCAAACAAATGACCTAAGGGATCTGGACTCCCCACTTTCGAATATACAAGATTATGAATTGAAAGTCCTTGAAGTTCGAGTAACTTGGGGCGCAAGTAATCGACTAAACACGATCTTGTTCTACATCTGCTATACTGAGATAGCGGTGGCACGCCCCACAAAGGCACCTTTCATAACTAACTTTGTCCTCTTCTTGCAACACATCAGCAAGCAAGAACCCGACTATACATCCAAAGTGCCAATCCCTTGGGGAGCTGTGCTGAGAGCCGAGGAGCTGTCTCCGGAGAAATCTTCGCCCGAACATCATAATGGTGGGATCTTTTCTTCCAAGGACTATCTGATGGTGTTGGGTTATGTTTATCCGGCTTATGAGTGCTATAAGACTCTGAAGAATAATAAGCCAGAGATCGAGCAACTTATACTTTGGTGCCAGTACTGGATACTAGTTGCCATGCTTACCGTATTGGAGAGAGTTGGGGATGCATTATTTGCATGGTTACCAATATACTGTGAAGTCAAATTGGCATTGTTTATATATCTCTGGTCTTCTAAAGTGAAAGGAACGAACTATCTTTACAATCACTTATTTCGGAATTTTGTTTCACAACATGAGTTAGAGATTGACAGTAAGATATTAGAATTTAGGGTTAAGACGGGAGATATTGCAAACTACTGTTGTCAAAAGGCTCTGAATTATGGCCACAAAGGTGTTTCTGAGATTTTTCAGTATGCGTCTTCTCATTCAGCGTCACAGCCTTGTCACGATCAGGCATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22

Protein Analysis

281

Amino Acids

32.26

Weight (kDa)

6.44

Isoelectric Point (pI)

46.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19950 AT1G75700 AT1G75700 AT1G75700
fragaria_vesca	FvH4_2g38590 FvH4_2g38590
malus_domestica	MD02G1218000.v1.1 MD05G1114200.v1.1 MD08G1013900.v1.1 MD15G1013400.v1.1
prunus_persica	Prupe.1G366900_v2.0.a1 Prupe.8G158600_v2.0.a1 Prupe.8G158600_v2.0.a1 Prupe.8G158700_v2.0.a1 Prupe.8G158700_v2.0.a1
pyrus_communis	pycom08g01260 pycom10g10090 pycom15g01160
rosa_chinensis	RchiOBHm_Chr6g0302701
rosa_laevigata	RLG00000011146
rosa_multiflora	Rmu_sc0009897.1_g000003
rosa_roxburghii	Rroxscaffold_7G00165400
rosa_rugosa	Rorug06G0316200 Rorug06G0316300 Rorug06G0316400
rosa_samantha	Rh6AG429700 Rh6BG472900 Rh6CG442100 Rh6DG428800
rosa_wichuraiana	Rw6G037200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	229, 492
AccIII	TCCGGA	1 cut(s)	346
AciI	CCGC	2 cut(s)	33, 209
AclWI	GGATC	2 cut(s)	93, 389
AcoI	YGGCCR	1 cut(s)	763
AcsI	RAATTY	2 cut(s)	658, 704
AcuI	CTGAAG	1 cut(s)	473
AfaI	GTAC	1 cut(s)	500
AfiI	CCNNNNNNNGG	1 cut(s)	226
AgsI	TTSAA	3 cut(s)	23, 127, 137
AhlI	ACTAGT	1 cut(s)	508
AleI	CACNNNNGTG	1 cut(s)	771
AluBI	AGCT	2 cut(s)	320, 340
AluI	AGCT	2 cut(s)	320, 340
Alw26I	GTCTC	1 cut(s)	348
AlwI	GGATC	2 cut(s)	93, 389
Aor13HI	TCCGGA	1 cut(s)	346
AoxI	GGCC	1 cut(s)	763
ApoI	RAATTY	2 cut(s)	658, 704
AspLEI	GCGC	1 cut(s)	158
AsuII	TTCGAA	1 cut(s)	104
AxyI	CCTNAGG	1 cut(s)	80
BalI	TGGCCA	1 cut(s)	765
BanI	GGYRCC	2 cut(s)	229, 492
BbsI	GAAGAC	2 cut(s)	603, 792
BccI	CCATC	1 cut(s)	400
BciVI	GTATCC	1 cut(s)	498
BcoDI	GTCTC	1 cut(s)	348
BcuI	ACTAGT	1 cut(s)	508
BfaI	CTAG	1 cut(s)	509
BfuI	GTATCC	1 cut(s)	498
BmcAI	AGTACT	1 cut(s)	500
BmiI	GGNNCC	2 cut(s)	231, 494
BmsI	GCATC	1 cut(s)	535
BpiI	GAAGAC	2 cut(s)	603, 792
Bpu14I	TTCGAA	1 cut(s)	104
BsaJI	CCNNGG	3 cut(s)	311, 333, 393
BsaWI	WCCGGW	1 cut(s)	346
Bsc4I	CCNNNNNNNGG	1 cut(s)	226
Bse1I	ACTGG	2 cut(s)	496, 506
Bse21I	CCTNAGG	1 cut(s)	80
BseAI	TCCGGA	1 cut(s)	346
BseDI	CCNNGG	3 cut(s)	311, 333, 393
BseGI	GGATG	2 cut(s)	293, 550
BseLI	CCNNNNNNNGG	1 cut(s)	226
BseMII	CTCAG	3 cut(s)	192, 317, 771
BseNI	ACTGG	2 cut(s)	496, 506
BseRI	GAGGAG	1 cut(s)	350
BshFI	GGCC	1 cut(s)	765
BshNI	GGYRCC	2 cut(s)	229, 492
BsiSI	CCGG	2 cut(s)	347, 428
BslI	CCNNNNNNNGG	1 cut(s)	226
BsmAI	GTCTC	1 cut(s)	348
BsnI	GGCC	1 cut(s)	765
Bsp119I	TTCGAA	1 cut(s)	104
Bsp13I	TCCGGA	1 cut(s)	346
Bsp143I	GATC	5 cut(s)	85, 177, 381, 471, 829
BspACI	CCGC	2 cut(s)	33, 209
BspANI	GGCC	1 cut(s)	765
BspCNI	CTCAG	3 cut(s)	193, 318, 772
BspEI	TCCGGA	1 cut(s)	346
BspLI	GGNNCC	2 cut(s)	231, 494
BspPI	GGATC	2 cut(s)	93, 389
BspT104I	TTCGAA	1 cut(s)	104
BspT107I	GGYRCC	2 cut(s)	229, 492
BsrI	ACTGG	2 cut(s)	496, 506
BssECI	CCNNGG	3 cut(s)	311, 333, 393
BssMI	GATC	5 cut(s)	85, 177, 381, 471, 829
BssT1I	CCWWGG	2 cut(s)	311, 393
Bst4CI	ACNGT	4 cut(s)	526, 575, 692, 740
Bst6I	CTCTTC	1 cut(s)	260
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstBI	TTCGAA	1 cut(s)	104
BstC8I	GCNNGC	2 cut(s)	217, 275
BstDEI	CTNAG	4 cut(s)	80, 201, 326, 780
BstEII	GGTNACC	1 cut(s)	561
BstF5I	GGATG	2 cut(s)	293, 550
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	5 cut(s)	88, 180, 384, 474, 832
BstMAI	GTCTC	1 cut(s)	348
BstMBI	GATC	5 cut(s)	85, 177, 381, 471, 829
BstMWI	GCNNNNNNNGC	1 cut(s)	554
BstNSI	RCATGY	1 cut(s)	840
BstPI	GGTNACC	1 cut(s)	561
BstV2I	GAAGAC	2 cut(s)	603, 792
BstX2I	RGATCY	2 cut(s)	85, 381
BstXI	CCANNNNNNTGG	1 cut(s)	312
BstYI	RGATCY	2 cut(s)	85, 381
Bsu36I	CCTNAGG	1 cut(s)	80
BsuI	GTATCC	1 cut(s)	498
BsuRI	GGCC	1 cut(s)	765
BtsCI	GGATG	2 cut(s)	293, 550
Cac8I	GCNNGC	2 cut(s)	217, 275
CfoI	GCGC	1 cut(s)	158
CseI	GACGC	2 cut(s)	786, 801
Csp6I	GTAC	1 cut(s)	499
CviAII	CATG	4 cut(s)	517, 558, 674, 837
CviJI	RGCY	8 cut(s)	320, 332, 340, 431, 466, 752, 765, 820
CviKI_1	RGCY	8 cut(s)	320, 332, 340, 431, 466, 752, 765, 820
CviQI	GTAC	1 cut(s)	499
DdeI	CTNAG	4 cut(s)	80, 201, 326, 780
DpnI	GATC	5 cut(s)	87, 179, 383, 473, 831
DpnII	GATC	5 cut(s)	85, 177, 381, 471, 829
DraI	TTTAAA	1 cut(s)	51
EaeI	YGGCCR	1 cut(s)	763
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
EciI	GGCGGA	1 cut(s)	22
Eco130I	CCWWGG	2 cut(s)	311, 393
Eco57I	CTGAAG	1 cut(s)	473
Eco81I	CCTNAGG	1 cut(s)	80
Eco91I	GGTNACC	1 cut(s)	561
EcoO65I	GGTNACC	1 cut(s)	561
EcoT14I	CCWWGG	2 cut(s)	311, 393
EcoT22I	ATGCAT	1 cut(s)	550
ErhI	CCWWGG	2 cut(s)	311, 393
FaeI	CATG	4 cut(s)	520, 561, 677, 840
FatI	CATG	4 cut(s)	516, 557, 673, 836
FokI	GGATG	2 cut(s)	280, 557
FspBI	CTAG	1 cut(s)	509
GlaI	GCGC	1 cut(s)	157
HaeIII	GGCC	1 cut(s)	765
HapII	CCGG	2 cut(s)	347, 428
HgaI	GACGC	2 cut(s)	786, 801
HhaI	GCGC	1 cut(s)	158
Hin1II	CATG	4 cut(s)	520, 561, 677, 840
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HinfI	GANTC	2 cut(s)	92, 448
HpaII	CCGG	2 cut(s)	347, 428
Hpy188I	TCNGA	5 cut(s)	405, 453, 657, 756, 781
Hpy188III	TCNNGA	3 cut(s)	89, 347, 827
HpyCH4III	ACNGT	4 cut(s)	526, 575, 692, 740
HpyCH4V	TGCA	4 cut(s)	262, 548, 557, 731
HpyF10VI	GCNNNNNNNGC	1 cut(s)	554
HpyF3I	CTNAG	4 cut(s)	80, 201, 326, 780
Hsp92II	CATG	4 cut(s)	520, 561, 677, 840
HspAI	GCGC	1 cut(s)	156
Kpn2I	TCCGGA	1 cut(s)	346
Kzo9I	GATC	5 cut(s)	85, 177, 381, 471, 829
LmnI	GCTCC	2 cut(s)	317, 337
LweI	GCATC	1 cut(s)	535
MaeI	CTAG	1 cut(s)	509
MaeIII	GTNAC	4 cut(s)	145, 561, 813, 824
MalI	GATC	5 cut(s)	87, 179, 383, 473, 831
MboI	GATC	5 cut(s)	85, 177, 381, 471, 829
MboII	GAAGA	6 cut(s)	247, 348, 381, 466, 603, 792
MflI	RGATCY	2 cut(s)	85, 381
MlsI	TGGCCA	1 cut(s)	765
MluCI	AATT	5 cut(s)	122, 584, 658, 704, 757
MluNI	TGGCCA	1 cut(s)	765
MlyI	GAGTC	2 cut(s)	86, 442
MmeI	TCCRAC	1 cut(s)	35
MnlI	CCTC	2 cut(s)	263, 328
Mox20I	TGGCCA	1 cut(s)	765
Mph1103I	ATGCAT	1 cut(s)	550
MroI	TCCGGA	1 cut(s)	346
MscI	TGGCCA	1 cut(s)	765
MseI	TTAA	4 cut(s)	50, 63, 714, 841
MslI	CAYNNNNRTG	3 cut(s)	372, 375, 771
Msp20I	TGGCCA	1 cut(s)	765
MspI	CCGG	2 cut(s)	347, 428
MwoI	GCNNNNNNNGC	1 cut(s)	554
NdeII	GATC	5 cut(s)	85, 177, 381, 471, 829
NlaIII	CATG	4 cut(s)	520, 561, 677, 840
NlaIV	GGNNCC	2 cut(s)	231, 494
NmeAIII	GCCGAG	1 cut(s)	358
NmuCI	GTSAC	2 cut(s)	813, 824
NsiI	ATGCAT	1 cut(s)	550
NspI	RCATGY	1 cut(s)	840
NspV	TTCGAA	1 cut(s)	104
OliI	CACNNNNGTG	1 cut(s)	771
PleI	GAGTC	2 cut(s)	86, 442
PpsI	GAGTC	2 cut(s)	86, 442
PspEI	GGTNACC	1 cut(s)	561
PspN4I	GGNNCC	2 cut(s)	231, 494
PsrI	GAACNNNNNNTAC	2 cut(s)	623, 655
PsuI	RGATCY	2 cut(s)	85, 381
RsaI	GTAC	1 cut(s)	500
RsaNI	GTAC	1 cut(s)	499
RseI	CAYNNNNRTG	3 cut(s)	372, 375, 771
SaqAI	TTAA	4 cut(s)	50, 63, 714, 841
Sau3AI	GATC	5 cut(s)	85, 177, 381, 471, 829
ScaI	AGTACT	1 cut(s)	500
SchI	GAGTC	2 cut(s)	86, 442
SetI	ASST	6 cut(s)	17, 81, 235, 322, 342, 775
SfaNI	GCATC	1 cut(s)	535
SfuI	TTCGAA	1 cut(s)	104
SmiMI	CAYNNNNRTG	3 cut(s)	372, 375, 771
SpeI	ACTAGT	1 cut(s)	508
Sse9I	AATT	5 cut(s)	122, 584, 658, 704, 757
SsiI	CCGC	2 cut(s)	33, 209
SspMI	CTAG	1 cut(s)	509
StyI	CCWWGG	2 cut(s)	311, 393
TaaI	ACNGT	4 cut(s)	526, 575, 692, 740
TaqI	TCGA	4 cut(s)	104, 142, 166, 474
TasI	AATT	5 cut(s)	122, 584, 658, 704, 757
TatI	WGTACW	1 cut(s)	498
Tru1I	TTAA	4 cut(s)	50, 63, 714, 841
Tru9I	TTAA	4 cut(s)	50, 63, 714, 841
TseFI	GTSAC	2 cut(s)	813, 824
Tsp45I	GTSAC	2 cut(s)	813, 824
TspDTI	ATGAA	2 cut(s)	135, 226
XapI	RAATTY	2 cut(s)	658, 704
XceI	RCATGY	1 cut(s)	840
XspI	CTAG	1 cut(s)	509
ZrmI	AGTACT	1 cut(s)	500
Zsp2I	ATGCAT	1 cut(s)	550

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.