Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004929

Physical Location & Seq

Genomic Coordinates Forward (+)

16826373 .. 16828288

Gene Structure 1916 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G158700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGCTGGGATCTTTTCTTCCAAGGGTTCTTCTGATGGTGTTTGGTTACGCTTATCCGGCTTATGAGTGCTATAAGACTCTGGATCATACGCCAGAGATTGGGCGACTTCTGTTTTGGTGCCGATACTGGATAGTAGTTGCTATGCTCACTGTGTTGGAGAGATTTGGGGATGCTTTATTTTCATGGGTACCAATATACAATGAAGCCAAATTTGCATTGTTTATATATCTCTGGTATTGGAGAGAGGAACGCACGGACCATCTTTATAATCGCTTCCGAGAATTAGTGGTACCACGTGAGGCAAAAATTGATAGAATCAGAGATAAGGCTAGGAATTTAGCAAACCAATCTTGTCAAGAGGCTATGAATTGTGGCCGAAAGGGTGTTTGTGCGATTTTGAATTATGTTTCTTCTCATCAATCGGCGCCACAGCCTCATTCTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22

Protein Analysis

149

Amino Acids

17.55

Weight (kDa)

8.61

Isoelectric Point (pI)

34.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19950 AT1G75700 AT1G75700 AT1G75700
fragaria_vesca	FvH4_2g38590 FvH4_2g38590
malus_domestica	MD02G1218000.v1.1 MD05G1114200.v1.1 MD08G1013900.v1.1 MD15G1013400.v1.1
prunus_persica	Prupe.1G366900_v2.0.a1 Prupe.8G158600_v2.0.a1 Prupe.8G158600_v2.0.a1 Prupe.8G158700_v2.0.a1 Prupe.8G158700_v2.0.a1
pyrus_communis	pycom08g01260 pycom10g10090 pycom15g01160
rosa_chinensis	RchiOBHm_Chr6g0302701
rosa_laevigata	RLG00000011146
rosa_multiflora	Rmu_sc0009897.1_g000003
rosa_roxburghii	Rroxscaffold_7G00165400
rosa_rugosa	Rorug06G0316200 Rorug06G0316300 Rorug06G0316400
rosa_samantha	Rh6AG429700 Rh6BG472900 Rh6CG442100 Rh6DG428800
rosa_wichuraiana	Rw6G037200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	267
Acc65I	GGTACC	2 cut(s)	187, 289
AccB1I	GGYRCC	4 cut(s)	117, 187, 289, 424
AccB7I	CCANNNNNTGG	1 cut(s)	98
AclWI	GGATC	2 cut(s)	16, 90
AcoI	YGGCCR	1 cut(s)	373
AcsI	RAATTY	2 cut(s)	209, 334
AcvI	CACGTG	1 cut(s)	296
AcyI	GRCGYC	1 cut(s)	425
AfaI	GTAC	2 cut(s)	189, 291
AfiI	CCNNNNNNNGG	1 cut(s)	98
AgsI	TTSAA	1 cut(s)	400
AlwI	GGATC	2 cut(s)	16, 90
AoxI	GGCC	1 cut(s)	373
ApoI	RAATTY	2 cut(s)	209, 334
ArsI	GACNNNNNNTTYG	2 cut(s)	96, 128
Asp718I	GGTACC	2 cut(s)	187, 289
AspLEI	GCGC	1 cut(s)	427
AspS9I	GGNCC	1 cut(s)	256
AvaII	GGWCC	1 cut(s)	256
BanI	GGYRCC	4 cut(s)	117, 187, 289, 424
BbrPI	CACGTG	1 cut(s)	296
BccI	CCATC	2 cut(s)	28, 267
BfaI	CTAG	1 cut(s)	330
BfoI	RGCGCY	1 cut(s)	428
Bme18I	GGWCC	1 cut(s)	256
BmgT120I	GGNCC	1 cut(s)	256
BmiI	GGNNCC	4 cut(s)	119, 189, 291, 426
BmsI	GCATC	1 cut(s)	160
BsaAI	YACGTR	1 cut(s)	296
BsaHI	GRCGYC	1 cut(s)	425
BsaJI	CCNNGG	1 cut(s)	20
Bsc4I	CCNNNNNNNGG	1 cut(s)	98
Bse1I	ACTGG	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	20
BseGI	GGATG	1 cut(s)	175
BseLI	CCNNNNNNNGG	1 cut(s)	98
BseNI	ACTGG	1 cut(s)	131
BseYI	CCCAGC	1 cut(s)	4
BshFI	GGCC	1 cut(s)	375
BshNI	GGYRCC	4 cut(s)	117, 187, 289, 424
BsiSI	CCGG	1 cut(s)	56
BslI	CCNNNNNNNGG	1 cut(s)	98
BsnI	GGCC	1 cut(s)	375
Bsp143I	GATC	2 cut(s)	8, 82
BspANI	GGCC	1 cut(s)	375
BspLI	GGNNCC	4 cut(s)	119, 189, 291, 426
BspPI	GGATC	2 cut(s)	16, 90
BspT107I	GGYRCC	4 cut(s)	117, 187, 289, 424
BsrI	ACTGG	1 cut(s)	131
BssECI	CCNNGG	1 cut(s)	20
BssMI	GATC	2 cut(s)	8, 82
BssNI	GRCGYC	1 cut(s)	425
BssT1I	CCWWGG	1 cut(s)	20
Bst4CI	ACNGT	1 cut(s)	151
BstACI	GRCGYC	1 cut(s)	425
BstBAI	YACGTR	1 cut(s)	296
BstF5I	GGATG	1 cut(s)	175
BstH2I	RGCGCY	1 cut(s)	428
BstHHI	GCGC	1 cut(s)	427
BstKTI	GATC	2 cut(s)	11, 85
BstMBI	GATC	2 cut(s)	8, 82
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 212
BstX2I	RGATCY	1 cut(s)	8
BstYI	RGATCY	1 cut(s)	8
BsuRI	GGCC	1 cut(s)	375
BtsCI	GGATG	1 cut(s)	175
BtsIMutI	CAGTG	1 cut(s)	147
CfoI	GCGC	1 cut(s)	427
Cfr13I	GGNCC	1 cut(s)	256
Csp6I	GTAC	2 cut(s)	188, 290
CviAII	CATG	1 cut(s)	183
CviJI	RGCY	6 cut(s)	59, 206, 329, 362, 375, 433
CviKI_1	RGCY	6 cut(s)	59, 206, 329, 362, 375, 433
CviQI	GTAC	2 cut(s)	188, 290
DinI	GGCGCC	1 cut(s)	426
DpnI	GATC	2 cut(s)	10, 84
DpnII	GATC	2 cut(s)	8, 82
EaeI	YGGCCR	1 cut(s)	373
Eco130I	CCWWGG	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	256
Eco72I	CACGTG	1 cut(s)	296
EcoT14I	CCWWGG	1 cut(s)	20
EgeI	GGCGCC	1 cut(s)	426
EheI	GGCGCC	1 cut(s)	426
ErhI	CCWWGG	1 cut(s)	20
FaeI	CATG	1 cut(s)	186
FatI	CATG	1 cut(s)	182
FokI	GGATG	1 cut(s)	182
FspBI	CTAG	1 cut(s)	330
GlaI	GCGC	1 cut(s)	426
GsaI	CCCAGC	1 cut(s)	8
HaeII	RGCGCY	1 cut(s)	428
HaeIII	GGCC	1 cut(s)	375
HapII	CCGG	1 cut(s)	56
HhaI	GCGC	1 cut(s)	427
Hin1I	GRCGYC	1 cut(s)	425
Hin1II	CATG	1 cut(s)	186
Hin6I	GCGC	1 cut(s)	425
HinP1I	GCGC	1 cut(s)	425
HinfI	GANTC	2 cut(s)	76, 315
HpaII	CCGG	1 cut(s)	56
Hpy188I	TCNGA	4 cut(s)	33, 278, 320, 442
Hpy188III	TCNNGA	2 cut(s)	80, 356
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4IV	ACGT	1 cut(s)	295
HpyCH4V	TGCA	1 cut(s)	215
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 212
HpySE526I	ACGT	1 cut(s)	295
Hsp92I	GRCGYC	1 cut(s)	425
Hsp92II	CATG	1 cut(s)	186
HspAI	GCGC	1 cut(s)	425
KasI	GGCGCC	1 cut(s)	424
KpnI	GGTACC	2 cut(s)	191, 293
Kzo9I	GATC	2 cut(s)	8, 82
LpnPI	CCDG	5 cut(s)	65, 69, 105, 112, 217
LweI	GCATC	1 cut(s)	160
MaeI	CTAG	1 cut(s)	330
MaeII	ACGT	1 cut(s)	295
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	2 cut(s)	10, 84
MboI	GATC	2 cut(s)	8, 82
MboII	GAAGA	3 cut(s)	8, 20, 402
MflI	RGATCY	1 cut(s)	8
MluCI	AATT	6 cut(s)	209, 281, 306, 334, 367, 400
Mly113I	GGCGCC	1 cut(s)	425
MlyI	GAGTC	1 cut(s)	70
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	4 cut(s)	238, 292, 352, 444
MspI	CCGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	2 cut(s)	56, 212
NarI	GGCGCC	1 cut(s)	425
NdeII	GATC	2 cut(s)	8, 82
NlaIII	CATG	1 cut(s)	186
NlaIV	GGNNCC	4 cut(s)	119, 189, 291, 426
PfeI	GAWTC	1 cut(s)	315
PflMI	CCANNNNNTGG	1 cut(s)	98
PleI	GAGTC	1 cut(s)	70
PluTI	GGCGCC	1 cut(s)	428
PmaCI	CACGTG	1 cut(s)	296
PmlI	CACGTG	1 cut(s)	296
PpsI	GAGTC	1 cut(s)	70
Ppu21I	YACGTR	1 cut(s)	296
PsiI	TTATAA	1 cut(s)	267
PspCI	CACGTG	1 cut(s)	296
PspFI	CCCAGC	1 cut(s)	4
PspN4I	GGNNCC	4 cut(s)	119, 189, 291, 426
PspPI	GGNCC	1 cut(s)	256
PsuI	RGATCY	1 cut(s)	8
RsaI	GTAC	2 cut(s)	189, 291
RsaNI	GTAC	2 cut(s)	188, 290
Sau3AI	GATC	2 cut(s)	8, 82
Sau96I	GGNCC	1 cut(s)	256
SchI	GAGTC	1 cut(s)	70
SetI	ASST	1 cut(s)	298
SfaNI	GCATC	1 cut(s)	160
SfoI	GGCGCC	1 cut(s)	426
SinI	GGWCC	1 cut(s)	256
Sse9I	AATT	6 cut(s)	209, 281, 306, 334, 367, 400
SspDI	GGCGCC	1 cut(s)	424
SspMI	CTAG	1 cut(s)	330
StyI	CCWWGG	1 cut(s)	20
TaaI	ACNGT	1 cut(s)	151
TaiI	ACGT	1 cut(s)	298
TasI	AATT	6 cut(s)	209, 281, 306, 334, 367, 400
TfiI	GAWTC	1 cut(s)	315
TscAI	CASTG	1 cut(s)	154
TspDTI	ATGAA	3 cut(s)	171, 216, 380
TspGWI	ACGGA	1 cut(s)	269
TspRI	CASTG	1 cut(s)	154
Van91I	CCANNNNNTGG	1 cut(s)	98
VpaK11BI	GGWCC	1 cut(s)	256
XapI	RAATTY	2 cut(s)	209, 334
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.