Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004929

Physical Location & Seq

Genomic Coordinates Forward (+)

61620636 .. 61623929

Gene Structure 3294 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G037200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGATCCTTGGCTATGCTTATCCAGCCTATGAGTGCTACAAAACTGTTGAAAAGAACAAGCCGGAGATCGAACAACTTCGCTTTTGGTGTCAGTATTGGATTTTGGTGGCTGTTTTGACGGTATGTGAGAGGGTTGGTGATGCTTTTGTTTCATGGGTTCCAATGTATAGTGAAGCTAAGTTGCTCTTCATCATATATCTGTGGTTTCCTAAAACAAAGGGAACGACTTATGTGTACGATTCCTTCTTTAGACCATATCTTGCAAAGCATGAGAATGATATTGATAGGAACTTGTTGGAACTAAGAACTAGGGCTGGTGATATCGCTATTTTATATTGGCAAAGAGCTGCAAGCTATAGTCAGACAAGAGTATTTGATATTTTGCAGTATGTTGCTGCTCAATCAACACCAAGGCCTCGCCCTGTTCAGCCACAACCAGGTGTTAGGGGTCGCCAAACCCCTGCTGCTCGCCAGCCTGCTCCAGCTCCAAATCGCCAACCAGCTACAACAACGCAATCCCAACCCGAAGAACTGCCATCTCCCACTTCCAGTACATCTTCTAGTAAGGACCAAAGAGAGATAGCAGAAGCGTTGGCTCCTTTACCAAAGCCTAAAGCTGCCCCCCAAGCAGCAGGTTCCAATACTCTAAAAGCACCAGCTCCACCTGAATCATCTGGCCAATCTACACCAACTGAAGAGGTGGAGGCAATGCAGACTGAATCAGTGACATCCTCTGCAGCAACTGAAAATACAAATCCGCCCCCGAAAGATACACTAATGGAAGGTACCAGTCGGCAAACACGAGCAGCATCGTTAAGGAAAACCCGATCTGCATCTGCAGCAAACCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22

Protein Analysis

283

Amino Acids

31.49

Weight (kDa)

9.15

Isoelectric Point (pI)

63.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TB2_DP1_HVA22	PF03134	8 - 86	4e-26	TB2/DP1, HVA22 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19950 AT1G75700 AT1G75700 AT1G75700
fragaria_vesca	FvH4_2g38590 FvH4_2g38590
malus_domestica	MD02G1218000.v1.1 MD05G1114200.v1.1 MD08G1013900.v1.1 MD15G1013400.v1.1
prunus_persica	Prupe.1G366900_v2.0.a1 Prupe.8G158600_v2.0.a1 Prupe.8G158600_v2.0.a1 Prupe.8G158700_v2.0.a1 Prupe.8G158700_v2.0.a1
pyrus_communis	pycom08g01260 pycom10g10090 pycom15g01160
rosa_chinensis	RchiOBHm_Chr6g0302701
rosa_laevigata	RLG00000011146
rosa_multiflora	Rmu_sc0009897.1_g000003
rosa_roxburghii	Rroxscaffold_7G00165400
rosa_rugosa	Rorug06G0316200 Rorug06G0316300 Rorug06G0316400
rosa_samantha	Rh6AG429700 Rh6BG472900 Rh6CG442100 Rh6DG428800
rosa_wichuraiana	Rw6G037200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	623
Acc65I	GGTACC	1 cut(s)	785
AccB1I	GGYRCC	1 cut(s)	785
AciI	CCGC	1 cut(s)	758
AcoI	YGGCCR	1 cut(s)	676
AcuI	CTGAAG	1 cut(s)	714
AfaI	GTAC	3 cut(s)	236, 553, 787
AfiI	CCNNNNNNNGG	1 cut(s)	437
AgsI	TTSAA	1 cut(s)	50
AjnI	CCWGG	1 cut(s)	436
AluBI	AGCT	7 cut(s)	176, 347, 354, 485, 503, 617, 659
AluI	AGCT	7 cut(s)	176, 347, 354, 485, 503, 617, 659
AlwNI	CAGNNNCTG	1 cut(s)	743
AoxI	GGCC	2 cut(s)	413, 676
ApeKI	GCWGC	8 cut(s)	347, 395, 464, 617, 629, 737, 806, 839
Asp700I	GAANNNNTTC	1 cut(s)	75
Asp718I	GGTACC	1 cut(s)	785
AspS9I	GGNCC	1 cut(s)	568
AsuHPI	GGTGA	2 cut(s)	149, 329
AvaII	GGWCC	1 cut(s)	568
BalI	TGGCCA	1 cut(s)	678
BanI	GGYRCC	1 cut(s)	785
BarI	GAAGNNNNNNTAC	2 cut(s)	227, 259
BauI	CACGAG	1 cut(s)	801
BbvI	GCAGC	7 cut(s)	334, 382, 451, 604, 641, 749, 818
BccI	CCATC	1 cut(s)	544
BciT130I	CCWGG	1 cut(s)	438
BfaI	CTAG	2 cut(s)	309, 561
BfmI	CTRYAG	3 cut(s)	355, 735, 837
BfuAI	ACCTGC	1 cut(s)	623
BisI	GCNGC	8 cut(s)	348, 396, 465, 618, 630, 738, 807, 840
BlsI	GCNGC	8 cut(s)	349, 397, 466, 619, 631, 739, 808, 841
Bme1390I	CCNGG	1 cut(s)	438
Bme18I	GGWCC	1 cut(s)	568
BmgT120I	GGNCC	1 cut(s)	568
BmiI	GGNNCC	4 cut(s)	159, 597, 637, 787
BmrFI	CCNGG	1 cut(s)	438
BmsI	GCATC	3 cut(s)	130, 818, 842
BpmI	CTGGAG	1 cut(s)	465
BsaBI	GATNNNNATC	1 cut(s)	832
BsaJI	CCNNGG	2 cut(s)	7, 410
Bsc4I	CCNNNNNNNGG	1 cut(s)	437
Bse1I	ACTGG	2 cut(s)	549, 789
Bse3DI	GCAATG	1 cut(s)	714
Bse8I	GATNNNNATC	1 cut(s)	832
BseBI	CCWGG	1 cut(s)	438
BseDI	CCNNGG	2 cut(s)	7, 410
BseGI	GGATG	1 cut(s)	728
BseJI	GATNNNNATC	1 cut(s)	832
BseLI	CCNNNNNNNGG	1 cut(s)	437
BseMI	GCAATG	1 cut(s)	714
BseNI	ACTGG	2 cut(s)	549, 789
BseXI	GCAGC	7 cut(s)	334, 382, 451, 604, 641, 749, 818
BshFI	GGCC	2 cut(s)	415, 678
BshNI	GGYRCC	1 cut(s)	785
BsiSI	CCGG	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	437
BsnI	GGCC	2 cut(s)	415, 678
Bsp143I	GATC	3 cut(s)	3, 66, 827
BspACI	CCGC	1 cut(s)	758
BspANI	GGCC	2 cut(s)	415, 678
BspLI	GGNNCC	4 cut(s)	159, 597, 637, 787
BspMAI	CTGCAG	2 cut(s)	739, 841
BspMI	ACCTGC	1 cut(s)	623
BspQI	GCTCTTC	1 cut(s)	191
BspT107I	GGYRCC	1 cut(s)	785
BsrDI	GCAATG	1 cut(s)	714
BsrI	ACTGG	2 cut(s)	549, 789
BssECI	CCNNGG	2 cut(s)	7, 410
BssMI	GATC	3 cut(s)	3, 66, 827
BssSI	CACGAG	1 cut(s)	801
BssT1I	CCWWGG	2 cut(s)	7, 410
Bst2BI	CACGAG	1 cut(s)	801
Bst2UI	CCWGG	1 cut(s)	438
Bst4CI	ACNGT	3 cut(s)	46, 121, 848
Bst6I	CTCTTC	2 cut(s)	191, 690
BstC8I	GCNNGC	4 cut(s)	352, 469, 473, 477
BstDEI	CTNAG	2 cut(s)	177, 302
BstF5I	GGATG	1 cut(s)	728
BstKTI	GATC	3 cut(s)	6, 69, 830
BstMBI	GATC	3 cut(s)	3, 66, 827
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 626, 839
BstNI	CCWGG	1 cut(s)	438
BstSCI	CCNGG	1 cut(s)	436
BstSFI	CTRYAG	3 cut(s)	355, 735, 837
BstV1I	GCAGC	7 cut(s)	334, 382, 451, 604, 641, 749, 818
BsuRI	GGCC	2 cut(s)	415, 678
BtsCI	GGATG	1 cut(s)	728
BtsIMutI	CAGTG	1 cut(s)	729
BveI	ACCTGC	1 cut(s)	623
Cac8I	GCNNGC	4 cut(s)	352, 469, 473, 477
CaiI	CAGNNNCTG	1 cut(s)	743
Cfr13I	GGNCC	1 cut(s)	568
CsiI	ACCWGGT	1 cut(s)	436
Csp6I	GTAC	3 cut(s)	235, 552, 786
CviAII	CATG	2 cut(s)	153, 269
CviQI	GTAC	3 cut(s)	235, 552, 786
DdeI	CTNAG	2 cut(s)	177, 302
DpnI	GATC	3 cut(s)	5, 68, 829
DpnII	GATC	3 cut(s)	3, 66, 827
EaeI	YGGCCR	1 cut(s)	676
Eam1104I	CTCTTC	2 cut(s)	191, 690
EarI	CTCTTC	2 cut(s)	191, 690
EciI	GGCGGA	1 cut(s)	747
Eco130I	CCWWGG	2 cut(s)	7, 410
Eco147I	AGGCCT	1 cut(s)	415
Eco32I	GATATC	1 cut(s)	322
Eco47I	GGWCC	1 cut(s)	568
Eco57I	CTGAAG	1 cut(s)	714
EcoRII	CCWGG	1 cut(s)	436
EcoRV	GATATC	1 cut(s)	322
EcoT14I	CCWWGG	2 cut(s)	7, 410
ErhI	CCWWGG	2 cut(s)	7, 410
FaeI	CATG	2 cut(s)	156, 272
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
FatI	CATG	2 cut(s)	152, 268
Fnu4HI	GCNGC	8 cut(s)	348, 396, 465, 618, 630, 738, 807, 840
FokI	GGATG	1 cut(s)	715
Fsp4HI	GCNGC	8 cut(s)	348, 396, 465, 618, 630, 738, 807, 840
FspBI	CTAG	2 cut(s)	309, 561
GluI	GCNGC	8 cut(s)	348, 396, 465, 618, 630, 738, 807, 840
GsuI	CTGGAG	1 cut(s)	465
HaeIII	GGCC	2 cut(s)	415, 678
HapII	CCGG	1 cut(s)	62
Hin1II	CATG	2 cut(s)	156, 272
HinfI	GANTC	3 cut(s)	239, 668, 719
HpaII	CCGG	1 cut(s)	62
HphI	GGTGA	2 cut(s)	149, 329
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	1 cut(s)	363
Hpy8I	GTNNAC	1 cut(s)	235
HpyAV	CCTTC	2 cut(s)	253, 776
HpyCH4III	ACNGT	3 cut(s)	46, 121, 848
HpyCH4V	TGCA	7 cut(s)	263, 350, 385, 712, 737, 833, 839
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 626, 839
HpyF3I	CTNAG	2 cut(s)	177, 302
Hsp92II	CATG	2 cut(s)	156, 272
KpnI	GGTACC	1 cut(s)	789
Kzo9I	GATC	3 cut(s)	3, 66, 827
LguI	GCTCTTC	1 cut(s)	191
LmnI	GCTCC	4 cut(s)	484, 490, 601, 664
Lsp1109I	GCAGC	7 cut(s)	334, 382, 451, 604, 641, 749, 818
LweI	GCATC	3 cut(s)	130, 818, 842
MabI	ACCWGGT	1 cut(s)	436
MaeI	CTAG	2 cut(s)	309, 561
MaeIII	GTNAC	1 cut(s)	724
MalI	GATC	3 cut(s)	5, 68, 829
MboI	GATC	3 cut(s)	3, 66, 827
MboII	GAAGA	4 cut(s)	178, 539, 549, 707
MlsI	TGGCCA	1 cut(s)	678
MluNI	TGGCCA	1 cut(s)	678
MmeI	TCCRAC	1 cut(s)	276
MnlI	CCTC	5 cut(s)	123, 426, 691, 697, 742
Mox20I	TGGCCA	1 cut(s)	678
MroXI	GAANNNNTTC	1 cut(s)	75
MscI	TGGCCA	1 cut(s)	678
MseI	TTAA	1 cut(s)	815
MslI	CAYNNNNRTG	1 cut(s)	273
Msp20I	TGGCCA	1 cut(s)	678
MspI	CCGG	1 cut(s)	62
MspR9I	CCNGG	1 cut(s)	438
MvaI	CCWGG	1 cut(s)	438
MwoI	GCNNNNNNNGC	3 cut(s)	23, 626, 839
NdeII	GATC	3 cut(s)	3, 66, 827
NlaIII	CATG	2 cut(s)	156, 272
NlaIV	GGNNCC	4 cut(s)	159, 597, 637, 787
NmuCI	GTSAC	1 cut(s)	724
PceI	AGGCCT	1 cut(s)	415
PciSI	GCTCTTC	1 cut(s)	191
PcsI	WCGNNNNNNNCGW	1 cut(s)	799
PdmI	GAANNNNTTC	1 cut(s)	75
PfeI	GAWTC	3 cut(s)	239, 668, 719
PkrI	GCNGC	8 cut(s)	349, 397, 466, 619, 631, 739, 808, 841
Psp6I	CCWGG	1 cut(s)	436
PspGI	CCWGG	1 cut(s)	436
PspN4I	GGNNCC	4 cut(s)	159, 597, 637, 787
PspPI	GGNCC	1 cut(s)	568
PstI	CTGCAG	2 cut(s)	739, 841
PstNI	CAGNNNCTG	1 cut(s)	743
RsaI	GTAC	3 cut(s)	236, 553, 787
RsaNI	GTAC	3 cut(s)	235, 552, 786
RseI	CAYNNNNRTG	1 cut(s)	273
SapI	GCTCTTC	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	815
SatI	GCNGC	8 cut(s)	348, 396, 465, 618, 630, 738, 807, 840
Sau3AI	GATC	3 cut(s)	3, 66, 827
Sau96I	GGNCC	1 cut(s)	568
ScrFI	CCNGG	1 cut(s)	438
SexAI	ACCWGGT	1 cut(s)	436
SfaNI	GCATC	3 cut(s)	130, 818, 842
SfcI	CTRYAG	3 cut(s)	355, 735, 837
SinI	GGWCC	1 cut(s)	568
SmiMI	CAYNNNNRTG	1 cut(s)	273
SseBI	AGGCCT	1 cut(s)	415
SsiI	CCGC	1 cut(s)	758
SspMI	CTAG	2 cut(s)	309, 561
StuI	AGGCCT	1 cut(s)	415
StyD4I	CCNGG	1 cut(s)	436
StyI	CCWWGG	2 cut(s)	7, 410
TaaI	ACNGT	3 cut(s)	46, 121, 848
TaqI	TCGA	1 cut(s)	69
TatI	WGTACW	1 cut(s)	551
TfiI	GAWTC	3 cut(s)	239, 668, 719
Tru1I	TTAA	1 cut(s)	815
Tru9I	TTAA	1 cut(s)	815
TscAI	CASTG	1 cut(s)	729
TseFI	GTSAC	1 cut(s)	724
TseI	GCWGC	8 cut(s)	347, 395, 464, 617, 629, 737, 806, 839
Tsp45I	GTSAC	1 cut(s)	724
TspDTI	ATGAA	2 cut(s)	141, 178
TspRI	CASTG	1 cut(s)	729
VpaK11BI	GGWCC	1 cut(s)	568
XmnI	GAANNNNTTC	1 cut(s)	75
XspI	CTAG	2 cut(s)	309, 561

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.