Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0004929

Physical Location & Seq

Genomic Coordinates Forward (+)

60908938 .. 60912175

Gene Structure 3238 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG428800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGTATCTTTTTAATTTTCTTTTCTTCTCGAGTTGCAGGATTTTGGTGGCTGTTTTGACGGTATGTGAGAGAGTTGGTGATGCTTTCGTTTCATGGGTTCCAATGTATAGTGAAGCTAAGTTGCTCTTCATCATATATCTGTGGTTTCCTAAAACAAAGGGAACGACCTATGTGTACGATTCCTTCTTTAGACCATATCTTGCAAAGCATGAGAATGATATTGATAGGAACTTGTTGGAACTAAGAACTAGGGCTGGTGATTTTGCTATTTTATATTGGCAAAGAGCTGCAAGCTATGGTCAGACAAGAGTATTTGATATTTTGCAGTATGTTGCTGCTCAATCAACACCAAGGCCTCGCCCTGTTCAGCCACAACCAGGTGTTAGGGGTCGCCAAACCCCTGCTGCTCGCCAGCCTGCTCCAGCTCCAAATCGCCAACCGGCTACAACAACGCAATCCCAACCCGAAGAACCACCATCTCCCACTTCCAGTACATCTTCTAGTAAGGACCAAAGAGAGATAGCAGAAGCGTTGGCTCCTTTACCAAAGGCTAAAGCTGCCCCCCAAGCAGCAGGTTCCAATACTCAAAAAGCACCAGCTCCACCTGAATCATCTGGCCAATCTACACCAACTGAAGAGGTGGAGGCAATGCAGACTGAAGCAGTGACATCCTCAGCAGCAACTGAAAGTACAAATCCGCCCCCGAAAGATACACTAATGGAAGGTCCCATTCGGCAAACACGAGCATCATTAAGGAAAACCCGTTCTGCATCTGCAGCAAACCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22

Protein Analysis

262

Amino Acids

28.88

Weight (kDa)

9.48

Isoelectric Point (pI)

61.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TB2_DP1_HVA22	PF03134	14 - 66	4.8e-16	TB2/DP1, HVA22 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19950 AT1G75700 AT1G75700 AT1G75700
fragaria_vesca	FvH4_2g38590 FvH4_2g38590
malus_domestica	MD02G1218000.v1.1 MD05G1114200.v1.1 MD08G1013900.v1.1 MD15G1013400.v1.1
prunus_persica	Prupe.1G366900_v2.0.a1 Prupe.8G158600_v2.0.a1 Prupe.8G158600_v2.0.a1 Prupe.8G158700_v2.0.a1 Prupe.8G158700_v2.0.a1
pyrus_communis	pycom08g01260 pycom10g10090 pycom15g01160
rosa_chinensis	RchiOBHm_Chr6g0302701
rosa_laevigata	RLG00000011146
rosa_multiflora	Rmu_sc0009897.1_g000003
rosa_roxburghii	Rroxscaffold_7G00165400
rosa_rugosa	Rorug06G0316200 Rorug06G0316300 Rorug06G0316400
rosa_samantha	Rh6AG429700 Rh6BG472900 Rh6CG442100 Rh6DG428800
rosa_wichuraiana	Rw6G037200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	563
AciI	CCGC	1 cut(s)	698
AcoI	YGGCCR	1 cut(s)	616
AcuI	CTGAAG	2 cut(s)	654, 678
AfaI	GTAC	3 cut(s)	176, 493, 691
AfiI	CCNNNNNNNGG	1 cut(s)	377
AjnI	CCWGG	1 cut(s)	376
AloI	GAACNNNNNNTCC	2 cut(s)	748, 780
AluBI	AGCT	6 cut(s)	116, 287, 294, 425, 557, 599
AluI	AGCT	6 cut(s)	116, 287, 294, 425, 557, 599
AlwNI	CAGNNNCTG	1 cut(s)	683
Ama87I	CYCGRG	1 cut(s)	28
AoxI	GGCC	2 cut(s)	353, 616
ApeKI	GCWGC	7 cut(s)	287, 335, 404, 557, 569, 677, 776
AspS9I	GGNCC	2 cut(s)	508, 725
AsuHPI	GGTGA	2 cut(s)	89, 269
AvaI	CYCGRG	1 cut(s)	28
AvaII	GGWCC	2 cut(s)	508, 725
BalI	TGGCCA	1 cut(s)	618
BarI	GAAGNNNNNNTAC	2 cut(s)	167, 199
BauI	CACGAG	1 cut(s)	741
BbvCI	CCTCAGC	1 cut(s)	673
BbvI	GCAGC	6 cut(s)	274, 322, 391, 544, 581, 689
BccI	CCATC	1 cut(s)	484
BciT130I	CCWGG	1 cut(s)	378
BfaI	CTAG	2 cut(s)	249, 501
BfmI	CTRYAG	1 cut(s)	774
BfuAI	ACCTGC	1 cut(s)	563
BisI	GCNGC	7 cut(s)	288, 336, 405, 558, 570, 678, 777
BlsI	GCNGC	7 cut(s)	289, 337, 406, 559, 571, 679, 778
Bme1390I	CCNGG	1 cut(s)	378
Bme18I	GGWCC	2 cut(s)	508, 725
BmeT110I	CYCGRG	1 cut(s)	28
BmgT120I	GGNCC	2 cut(s)	508, 725
BmiI	GGNNCC	4 cut(s)	99, 537, 577, 727
BmrFI	CCNGG	1 cut(s)	378
BmsI	GCATC	3 cut(s)	70, 755, 779
BpmI	CTGGAG	1 cut(s)	405
Bpu10I	CCTNAGC	1 cut(s)	673
BsaJI	CCNNGG	1 cut(s)	350
Bsc4I	CCNNNNNNNGG	1 cut(s)	377
Bse118I	RCCGGY	1 cut(s)	439
Bse1I	ACTGG	1 cut(s)	489
Bse3DI	GCAATG	1 cut(s)	654
BseBI	CCWGG	1 cut(s)	378
BseDI	CCNNGG	1 cut(s)	350
BseGI	GGATG	1 cut(s)	668
BseLI	CCNNNNNNNGG	1 cut(s)	377
BseMI	GCAATG	1 cut(s)	654
BseMII	CTCAG	1 cut(s)	687
BseNI	ACTGG	1 cut(s)	489
BseXI	GCAGC	6 cut(s)	274, 322, 391, 544, 581, 689
BshFI	GGCC	2 cut(s)	355, 618
BsiHKCI	CYCGRG	1 cut(s)	28
BsiSI	CCGG	1 cut(s)	440
BslFI	GGGAC	1 cut(s)	711
BslI	CCNNNNNNNGG	1 cut(s)	377
BsmFI	GGGAC	1 cut(s)	711
BsnI	GGCC	2 cut(s)	355, 618
BsoBI	CYCGRG	1 cut(s)	28
BspACI	CCGC	1 cut(s)	698
BspANI	GGCC	2 cut(s)	355, 618
BspCNI	CTCAG	1 cut(s)	686
BspLI	GGNNCC	4 cut(s)	99, 537, 577, 727
BspMAI	CTGCAG	1 cut(s)	778
BspMI	ACCTGC	1 cut(s)	563
BspQI	GCTCTTC	1 cut(s)	131
BsrDI	GCAATG	1 cut(s)	654
BsrFI	RCCGGY	1 cut(s)	439
BsrI	ACTGG	1 cut(s)	489
BssAI	RCCGGY	1 cut(s)	439
BssECI	CCNNGG	1 cut(s)	350
BssSI	CACGAG	1 cut(s)	741
BssT1I	CCWWGG	1 cut(s)	350
Bst2BI	CACGAG	1 cut(s)	741
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	2 cut(s)	61, 785
Bst6I	CTCTTC	2 cut(s)	131, 630
BstC8I	GCNNGC	4 cut(s)	292, 409, 413, 417
BstDEI	CTNAG	3 cut(s)	117, 242, 673
BstF5I	GGATG	1 cut(s)	668
BstMWI	GCNNNNNNNGC	3 cut(s)	557, 566, 776
BstNI	CCWGG	1 cut(s)	378
BstSCI	CCNGG	1 cut(s)	376
BstSFI	CTRYAG	1 cut(s)	774
BstV1I	GCAGC	6 cut(s)	274, 322, 391, 544, 581, 689
BsuRI	GGCC	2 cut(s)	355, 618
BtsCI	GGATG	1 cut(s)	668
BtsI	GCAGTG	1 cut(s)	669
BtsIMutI	CAGTG	1 cut(s)	669
BveI	ACCTGC	1 cut(s)	563
Cac8I	GCNNGC	4 cut(s)	292, 409, 413, 417
CaiI	CAGNNNCTG	1 cut(s)	683
Cfr10I	RCCGGY	1 cut(s)	439
Cfr13I	GGNCC	2 cut(s)	508, 725
CsiI	ACCWGGT	1 cut(s)	376
Csp6I	GTAC	3 cut(s)	175, 492, 690
CviAII	CATG	2 cut(s)	93, 209
CviQI	GTAC	3 cut(s)	175, 492, 690
DdeI	CTNAG	3 cut(s)	117, 242, 673
EaeI	YGGCCR	1 cut(s)	616
Eam1104I	CTCTTC	2 cut(s)	131, 630
EarI	CTCTTC	2 cut(s)	131, 630
EciI	GGCGGA	1 cut(s)	687
Eco130I	CCWWGG	1 cut(s)	350
Eco147I	AGGCCT	1 cut(s)	355
Eco47I	GGWCC	2 cut(s)	508, 725
Eco57I	CTGAAG	2 cut(s)	654, 678
Eco88I	CYCGRG	1 cut(s)	28
EcoO109I	RGGNCCY	1 cut(s)	725
EcoRII	CCWGG	1 cut(s)	376
EcoT14I	CCWWGG	1 cut(s)	350
ErhI	CCWWGG	1 cut(s)	350
FaeI	CATG	2 cut(s)	96, 212
FalI	AAGNNNNNCTT	2 cut(s)	110, 142
FaqI	GGGAC	1 cut(s)	711
FatI	CATG	2 cut(s)	92, 208
Fnu4HI	GCNGC	7 cut(s)	288, 336, 405, 558, 570, 678, 777
FokI	GGATG	1 cut(s)	655
Fsp4HI	GCNGC	7 cut(s)	288, 336, 405, 558, 570, 678, 777
FspBI	CTAG	2 cut(s)	249, 501
GluI	GCNGC	7 cut(s)	288, 336, 405, 558, 570, 678, 777
GsuI	CTGGAG	1 cut(s)	405
HaeIII	GGCC	2 cut(s)	355, 618
HapII	CCGG	1 cut(s)	440
Hin1II	CATG	2 cut(s)	96, 212
HinfI	GANTC	2 cut(s)	179, 608
HpaII	CCGG	1 cut(s)	440
HphI	GGTGA	2 cut(s)	89, 269
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	1 cut(s)	303
Hpy188III	TCNNGA	1 cut(s)	28
Hpy8I	GTNNAC	1 cut(s)	175
HpyAV	CCTTC	2 cut(s)	193, 716
HpyCH4III	ACNGT	2 cut(s)	61, 785
HpyCH4V	TGCA	7 cut(s)	36, 203, 290, 325, 652, 770, 776
HpyF10VI	GCNNNNNNNGC	3 cut(s)	557, 566, 776
HpyF3I	CTNAG	3 cut(s)	117, 242, 673
Hsp92II	CATG	2 cut(s)	96, 212
LguI	GCTCTTC	1 cut(s)	131
LmnI	GCTCC	4 cut(s)	424, 430, 541, 604
Lsp1109I	GCAGC	6 cut(s)	274, 322, 391, 544, 581, 689
LweI	GCATC	3 cut(s)	70, 755, 779
MabI	ACCWGGT	1 cut(s)	376
MaeI	CTAG	2 cut(s)	249, 501
MaeIII	GTNAC	1 cut(s)	664
MboII	GAAGA	5 cut(s)	16, 118, 479, 489, 647
MlsI	TGGCCA	1 cut(s)	618
MluCI	AATT	1 cut(s)	13
MluNI	TGGCCA	1 cut(s)	618
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	4 cut(s)	366, 631, 637, 682
Mox20I	TGGCCA	1 cut(s)	618
MscI	TGGCCA	1 cut(s)	618
MseI	TTAA	2 cut(s)	12, 752
MslI	CAYNNNNRTG	1 cut(s)	213
Msp20I	TGGCCA	1 cut(s)	618
MspI	CCGG	1 cut(s)	440
MspR9I	CCNGG	1 cut(s)	378
MvaI	CCWGG	1 cut(s)	378
MwoI	GCNNNNNNNGC	3 cut(s)	557, 566, 776
NlaIII	CATG	2 cut(s)	96, 212
NlaIV	GGNNCC	4 cut(s)	99, 537, 577, 727
NmuCI	GTSAC	1 cut(s)	664
PaeR7I	CTCGAG	1 cut(s)	28
PceI	AGGCCT	1 cut(s)	355
PciSI	GCTCTTC	1 cut(s)	131
PcsI	WCGNNNNNNNCGW	1 cut(s)	739
PfeI	GAWTC	2 cut(s)	179, 608
PkrI	GCNGC	7 cut(s)	289, 337, 406, 559, 571, 679, 778
PpuMI	RGGWCCY	1 cut(s)	725
Psp5II	RGGWCCY	1 cut(s)	725
Psp6I	CCWGG	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	4 cut(s)	99, 537, 577, 727
PspPI	GGNCC	2 cut(s)	508, 725
PspPPI	RGGWCCY	1 cut(s)	725
PstI	CTGCAG	1 cut(s)	778
PstNI	CAGNNNCTG	1 cut(s)	683
RsaI	GTAC	3 cut(s)	176, 493, 691
RsaNI	GTAC	3 cut(s)	175, 492, 690
RseI	CAYNNNNRTG	1 cut(s)	213
SapI	GCTCTTC	1 cut(s)	131
SaqAI	TTAA	2 cut(s)	12, 752
SatI	GCNGC	7 cut(s)	288, 336, 405, 558, 570, 678, 777
Sau96I	GGNCC	2 cut(s)	508, 725
ScrFI	CCNGG	1 cut(s)	378
SexAI	ACCWGGT	1 cut(s)	376
SfaNI	GCATC	3 cut(s)	70, 755, 779
SfcI	CTRYAG	1 cut(s)	774
Sfr274I	CTCGAG	1 cut(s)	28
SinI	GGWCC	2 cut(s)	508, 725
SlaI	CTCGAG	1 cut(s)	28
SmiMI	CAYNNNNRTG	1 cut(s)	213
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
Sse9I	AATT	1 cut(s)	13
SseBI	AGGCCT	1 cut(s)	355
SsiI	CCGC	1 cut(s)	698
SspMI	CTAG	2 cut(s)	249, 501
StuI	AGGCCT	1 cut(s)	355
StyD4I	CCNGG	1 cut(s)	376
StyI	CCWWGG	1 cut(s)	350
TaaI	ACNGT	2 cut(s)	61, 785
TaqI	TCGA	1 cut(s)	29
TasI	AATT	1 cut(s)	13
TatI	WGTACW	2 cut(s)	491, 689
TfiI	GAWTC	2 cut(s)	179, 608
Tru1I	TTAA	2 cut(s)	12, 752
Tru9I	TTAA	2 cut(s)	12, 752
TscAI	CASTG	1 cut(s)	669
TseFI	GTSAC	1 cut(s)	664
TseI	GCWGC	7 cut(s)	287, 335, 404, 557, 569, 677, 776
Tsp45I	GTSAC	1 cut(s)	664
TspDTI	ATGAA	2 cut(s)	81, 118
TspRI	CASTG	1 cut(s)	669
VpaK11BI	GGWCC	2 cut(s)	508, 725
XhoI	CTCGAG	1 cut(s)	28
XspI	CTAG	2 cut(s)	249, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.