Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0004929

Physical Location & Seq

Genomic Coordinates Forward (+)

16822450 .. 16824101

Gene Structure 1652 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G158600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGCTGGGATCTTTTCTTCCAAGGGTTCTTCTGATGGTGTTTGGTTACGCTTATCCGGCTTATGAGTGCTATAAGACTGTGGGGAAGAATAAGCCAGAGATTGAGCAACTTCTGTTTTGGTGCCAATACTGGATATTGGTTGCTATGCTTACTGTGTTGGAGAGATTTGGGGATGCTTTATTTTCATGGGTACCAATATACAATGAAGCCAAATTGGCGTTGTTTATATATCTCTGGTCTTCTAAGGAGAAAGGCACGGCCTATCTTTATAATCGCTTCTTCCGAGACTTTGTGGCACAACATGAGGCAGAAATTGATGGTAAGATATTGGAATTCAGAGTTAAGACTAGGGATTTTGCAAACCTATCTTGTCAAATGGCTCTGAATTATGGCCAAAAAGGTGTTTATGAGATTTTGGAGTATGTTTCTTCTCATCAGTCGGCGCCACAGCCTCATTCTGATCAGAAGCAAGAGAAGGGCACTGGAAAAGTAATTGTTGCTGGTCAGTCTGAAGCTGAAGCAAGGGACCAAAGAACAACAAACGACTTTGAAGAGAAACCAACTGAATCAGTATCATTGTCTGGAAATGGAACCCCAATTCTTCCCAGCAGAAAACACTGGTTAAAGAAGCTCATCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22

Protein Analysis

214

Amino Acids

24.6

Weight (kDa)

8.31

Isoelectric Point (pI)

34.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19950 AT1G75700 AT1G75700 AT1G75700
fragaria_vesca	FvH4_2g38590 FvH4_2g38590
malus_domestica	MD02G1218000.v1.1 MD05G1114200.v1.1 MD08G1013900.v1.1 MD15G1013400.v1.1
prunus_persica	Prupe.1G366900_v2.0.a1 Prupe.8G158600_v2.0.a1 Prupe.8G158600_v2.0.a1 Prupe.8G158700_v2.0.a1 Prupe.8G158700_v2.0.a1
pyrus_communis	pycom08g01260 pycom10g10090 pycom15g01160
rosa_chinensis	RchiOBHm_Chr6g0302701
rosa_laevigata	RLG00000011146
rosa_multiflora	Rmu_sc0009897.1_g000003
rosa_roxburghii	Rroxscaffold_7G00165400
rosa_rugosa	Rorug06G0316200 Rorug06G0316300 Rorug06G0316400
rosa_samantha	Rh6AG429700 Rh6BG472900 Rh6CG442100 Rh6DG428800
rosa_wichuraiana	Rw6G037200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	270
Acc65I	GGTACC	1 cut(s)	190
AccB1I	GGYRCC	3 cut(s)	120, 190, 442
AclWI	GGATC	1 cut(s)	16
AcoI	YGGCCR	1 cut(s)	391
AcsI	RAATTY	1 cut(s)	332
AcuI	CTGAAG	2 cut(s)	531, 537
AcyI	GRCGYC	1 cut(s)	443
AfaI	GTAC	1 cut(s)	192
AgsI	TTSAA	1 cut(s)	551
AluBI	AGCT	2 cut(s)	515, 631
AluI	AGCT	2 cut(s)	515, 631
Alw26I	GTCTC	1 cut(s)	279
AlwI	GGATC	1 cut(s)	16
AoxI	GGCC	2 cut(s)	258, 391
ApoI	RAATTY	1 cut(s)	332
Asp718I	GGTACC	1 cut(s)	190
AspLEI	GCGC	1 cut(s)	445
AspS9I	GGNCC	1 cut(s)	526
AvaII	GGWCC	1 cut(s)	526
BaeGI	GKGCMC	1 cut(s)	482
BalI	TGGCCA	1 cut(s)	393
BanI	GGYRCC	3 cut(s)	120, 190, 442
BbsI	GAAGAC	1 cut(s)	231
BccI	CCATC	2 cut(s)	28, 311
BceAI	ACGGC	1 cut(s)	273
BclI	TGATCA	1 cut(s)	460
BcoDI	GTCTC	1 cut(s)	279
BfaI	CTAG	1 cut(s)	348
BfoI	RGCGCY	1 cut(s)	446
BglI	GCCNNNNNGGC	1 cut(s)	215
Bme18I	GGWCC	1 cut(s)	526
BmgT120I	GGNCC	1 cut(s)	526
BmiI	GGNNCC	5 cut(s)	122, 192, 444, 527, 592
BmsI	GCATC	1 cut(s)	163
BpiI	GAAGAC	1 cut(s)	231
BsaHI	GRCGYC	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	20
Bse1I	ACTGG	3 cut(s)	134, 487, 623
BseDI	CCNNGG	1 cut(s)	20
BseGI	GGATG	1 cut(s)	178
BseNI	ACTGG	3 cut(s)	134, 487, 623
BseSI	GKGCMC	1 cut(s)	482
BseYI	CCCAGC	2 cut(s)	4, 605
BshFI	GGCC	2 cut(s)	260, 393
BshNI	GGYRCC	3 cut(s)	120, 190, 442
BsiSI	CCGG	1 cut(s)	56
BslFI	GGGAC	1 cut(s)	539
BsmAI	GTCTC	1 cut(s)	279
BsmFI	GGGAC	1 cut(s)	539
BsnI	GGCC	2 cut(s)	260, 393
Bsp1286I	GDGCHC	1 cut(s)	482
Bsp143I	GATC	2 cut(s)	8, 460
BspANI	GGCC	2 cut(s)	260, 393
BspLI	GGNNCC	5 cut(s)	122, 192, 444, 527, 592
BspPI	GGATC	1 cut(s)	16
BspT107I	GGYRCC	3 cut(s)	120, 190, 442
BsrI	ACTGG	3 cut(s)	134, 487, 623
BssECI	CCNNGG	1 cut(s)	20
BssMI	GATC	2 cut(s)	8, 460
BssNI	GRCGYC	1 cut(s)	443
BssT1I	CCWWGG	1 cut(s)	20
Bst4CI	ACNGT	2 cut(s)	79, 154
Bst6I	CTCTTC	1 cut(s)	546
BstACI	GRCGYC	1 cut(s)	443
BstDEI	CTNAG	1 cut(s)	243
BstF5I	GGATG	1 cut(s)	178
BstH2I	RGCGCY	1 cut(s)	446
BstHHI	GCGC	1 cut(s)	445
BstKTI	GATC	2 cut(s)	11, 463
BstMAI	GTCTC	1 cut(s)	279
BstMBI	GATC	2 cut(s)	8, 460
BstMWI	GCNNNNNNNGC	2 cut(s)	56, 215
BstSLI	GKGCMC	1 cut(s)	482
BstV2I	GAAGAC	1 cut(s)	231
BstX2I	RGATCY	1 cut(s)	8
BstYI	RGATCY	1 cut(s)	8
BsuRI	GGCC	2 cut(s)	260, 393
BtsCI	GGATG	1 cut(s)	178
BtsIMutI	CAGTG	2 cut(s)	480, 616
CfoI	GCGC	1 cut(s)	445
Cfr13I	GGNCC	1 cut(s)	526
Csp6I	GTAC	1 cut(s)	191
CviAII	CATG	2 cut(s)	186, 302
CviJI	RGCY	9 cut(s)	59, 94, 209, 260, 380, 393, 451, 515, 631
CviKI_1	RGCY	9 cut(s)	59, 94, 209, 260, 380, 393, 451, 515, 631
CviQI	GTAC	1 cut(s)	191
DdeI	CTNAG	1 cut(s)	243
DinI	GGCGCC	1 cut(s)	444
DpnI	GATC	2 cut(s)	10, 462
DpnII	GATC	2 cut(s)	8, 460
EaeI	YGGCCR	1 cut(s)	391
Eam1104I	CTCTTC	1 cut(s)	546
EarI	CTCTTC	1 cut(s)	546
Eco130I	CCWWGG	1 cut(s)	20
Eco47I	GGWCC	1 cut(s)	526
Eco57I	CTGAAG	2 cut(s)	531, 537
EcoRI	GAATTC	1 cut(s)	332
EcoT14I	CCWWGG	1 cut(s)	20
EgeI	GGCGCC	1 cut(s)	444
EheI	GGCGCC	1 cut(s)	444
ErhI	CCWWGG	1 cut(s)	20
FaeI	CATG	2 cut(s)	189, 305
FaqI	GGGAC	1 cut(s)	539
FatI	CATG	2 cut(s)	185, 301
FbaI	TGATCA	1 cut(s)	460
FokI	GGATG	1 cut(s)	185
FspBI	CTAG	1 cut(s)	348
GlaI	GCGC	1 cut(s)	444
GsaI	CCCAGC	2 cut(s)	8, 609
HaeII	RGCGCY	1 cut(s)	446
HaeIII	GGCC	2 cut(s)	260, 393
HapII	CCGG	1 cut(s)	56
HhaI	GCGC	1 cut(s)	445
Hin1I	GRCGYC	1 cut(s)	443
Hin1II	CATG	2 cut(s)	189, 305
Hin6I	GCGC	1 cut(s)	443
HinP1I	GCGC	1 cut(s)	443
HinfI	GANTC	1 cut(s)	566
HpaII	CCGG	1 cut(s)	56
Hpy188I	TCNGA	8 cut(s)	33, 284, 338, 384, 460, 465, 511, 638
Hpy188III	TCNNGA	1 cut(s)	582
HpyAV	CCTTC	1 cut(s)	469
HpyCH4III	ACNGT	2 cut(s)	79, 154
HpyCH4V	TGCA	1 cut(s)	359
HpyF10VI	GCNNNNNNNGC	2 cut(s)	56, 215
HpyF3I	CTNAG	1 cut(s)	243
Hsp92I	GRCGYC	1 cut(s)	443
Hsp92II	CATG	2 cut(s)	189, 305
HspAI	GCGC	1 cut(s)	443
KasI	GGCGCC	1 cut(s)	442
KpnI	GGTACC	1 cut(s)	194
Ksp22I	TGATCA	1 cut(s)	460
Kzo9I	GATC	2 cut(s)	8, 460
LpnPI	CCDG	9 cut(s)	69, 108, 115, 220, 468, 486, 567, 604, 619
LweI	GCATC	1 cut(s)	163
MaeI	CTAG	1 cut(s)	348
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	2 cut(s)	10, 462
MboI	GATC	2 cut(s)	8, 460
MboII	GAAGA	8 cut(s)	8, 20, 97, 231, 271, 420, 563, 593
MflI	RGATCY	1 cut(s)	8
MhlI	GDGCHC	1 cut(s)	482
MlsI	TGGCCA	1 cut(s)	393
MluCI	AATT	6 cut(s)	212, 312, 332, 385, 492, 597
MluNI	TGGCCA	1 cut(s)	393
Mly113I	GGCGCC	1 cut(s)	443
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	2 cut(s)	298, 462
Mox20I	TGGCCA	1 cut(s)	393
MscI	TGGCCA	1 cut(s)	393
MseI	TTAA	2 cut(s)	342, 623
Msp20I	TGGCCA	1 cut(s)	393
MspI	CCGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	2 cut(s)	56, 215
NarI	GGCGCC	1 cut(s)	443
NdeII	GATC	2 cut(s)	8, 460
NlaIII	CATG	2 cut(s)	189, 305
NlaIV	GGNNCC	5 cut(s)	122, 192, 444, 527, 592
PcsI	WCGNNNNNNNCGW	1 cut(s)	280
PfeI	GAWTC	1 cut(s)	566
PluTI	GGCGCC	1 cut(s)	446
PsiI	TTATAA	1 cut(s)	270
PspFI	CCCAGC	2 cut(s)	4, 605
PspN4I	GGNNCC	5 cut(s)	122, 192, 444, 527, 592
PspPI	GGNCC	1 cut(s)	526
PsuI	RGATCY	1 cut(s)	8
RsaI	GTAC	1 cut(s)	192
RsaNI	GTAC	1 cut(s)	191
SaqAI	TTAA	2 cut(s)	342, 623
Sau3AI	GATC	2 cut(s)	8, 460
Sau96I	GGNCC	1 cut(s)	526
SduI	GDGCHC	1 cut(s)	482
SetI	ASST	4 cut(s)	366, 403, 517, 633
SfaNI	GCATC	1 cut(s)	163
SfoI	GGCGCC	1 cut(s)	444
SinI	GGWCC	1 cut(s)	526
Sse9I	AATT	6 cut(s)	212, 312, 332, 385, 492, 597
SspDI	GGCGCC	1 cut(s)	442
SspMI	CTAG	1 cut(s)	348
StyI	CCWWGG	1 cut(s)	20
TaaI	ACNGT	2 cut(s)	79, 154
TasI	AATT	6 cut(s)	212, 312, 332, 385, 492, 597
TfiI	GAWTC	1 cut(s)	566
Tru1I	TTAA	2 cut(s)	342, 623
Tru9I	TTAA	2 cut(s)	342, 623
TscAI	CASTG	2 cut(s)	487, 623
TspDTI	ATGAA	2 cut(s)	174, 219
TspRI	CASTG	2 cut(s)	487, 623
VpaK11BI	GGWCC	1 cut(s)	526
XapI	RAATTY	1 cut(s)	332
XspI	CTAG	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.