Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009897.1

Orthogroup ID

OG0004929

Physical Location & Seq

Genomic Coordinates Forward (+)

13720 .. 15534

Gene Structure 1815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009897.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

atgattggatcatttcttaccagaggacttgtgatgatccttggctatgcttatccagcctatgagtgctacaagactgttgaaaagaacaagccggagatcgaacaacttcgcttttggtgtcagtattggattttggtggctgttttgacggtatgtgagagggttggtgatgcttttgtttcatgggttccaatgtatagtgaagctaagttgctcttcatcatatatctgtggtttcctaaaacaaagggaacgacttatgtgtacgattccttctttagaccatatcttgcaaagcatgagaatgatattgataggaacttgttggaactaagaactagggctggtgatatcgctattttatattggcaaagagctgcaagctatagtcagacaagagtatttgatattttgcagtatgttgctgctcaatcaacaccaaggcctcgccctgttcagccacaaccaggtgttaggggtcgccaaacccctgctgctcgccagcctgctccagctccaaatcgtcaaccagctacaacaacgcaatcccaaccggaagaaccgccatctcccacttccagtacatcttctagtaaggaccaaagagagatagcagaagccttggctcctttaccaaagcctaaagctgcccaagcagcaggttccaatactaaaaaagcaccagctccacctgaatcatctggccaatctacaccaactgaagaggtggaggcaatgcagactgaagcagtgacatcctctgcagcaactgaaaatacaaatccgcccccgaaagatacactaatggaaggtgccagtcggcaaacacgagcagcatcgttaaggaaaacccgatctgcatctgcagcaaaccgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TB2_DP1_HVA22

Protein Analysis

293

Amino Acids

32.52

Weight (kDa)

9.34

Isoelectric Point (pI)

60.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004929)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19950 AT1G75700 AT1G75700 AT1G75700
fragaria_vesca	FvH4_2g38590 FvH4_2g38590
malus_domestica	MD02G1218000.v1.1 MD05G1114200.v1.1 MD08G1013900.v1.1 MD15G1013400.v1.1
prunus_persica	Prupe.1G366900_v2.0.a1 Prupe.8G158600_v2.0.a1 Prupe.8G158600_v2.0.a1 Prupe.8G158700_v2.0.a1 Prupe.8G158700_v2.0.a1
pyrus_communis	pycom08g01260 pycom10g10090 pycom15g01160
rosa_chinensis	RchiOBHm_Chr6g0302701
rosa_laevigata	RLG00000011146
rosa_multiflora	Rmu_sc0009897.1_g000003
rosa_roxburghii	Rroxscaffold_7G00165400
rosa_rugosa	Rorug06G0316200 Rorug06G0316300 Rorug06G0316400
rosa_samantha	Rh6AG429700 Rh6BG472900 Rh6CG442100 Rh6DG428800
rosa_wichuraiana	Rw6G037200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	653
AccB1I	GGYRCC	1 cut(s)	815
AciI	CCGC	2 cut(s)	566, 788
AclWI	GGATC	2 cut(s)	16, 31
AcoI	YGGCCR	1 cut(s)	706
AcuI	CTGAAG	2 cut(s)	744, 768
AfaI	GTAC	2 cut(s)	269, 586
AfiI	CCNNNNNNNGG	1 cut(s)	470
AgsI	TTSAA	1 cut(s)	83
AjnI	CCWGG	1 cut(s)	469
AluBI	AGCT	7 cut(s)	209, 380, 387, 518, 536, 650, 689
AluI	AGCT	7 cut(s)	209, 380, 387, 518, 536, 650, 689
AlwI	GGATC	2 cut(s)	16, 31
AlwNI	CAGNNNCTG	1 cut(s)	773
AoxI	GGCC	2 cut(s)	446, 706
ApeKI	GCWGC	8 cut(s)	380, 428, 497, 650, 659, 767, 836, 869
Asp700I	GAANNNNTTC	1 cut(s)	108
AspS9I	GGNCC	1 cut(s)	601
AsuHPI	GGTGA	2 cut(s)	182, 362
AvaII	GGWCC	1 cut(s)	601
BalI	TGGCCA	1 cut(s)	708
BanI	GGYRCC	1 cut(s)	815
BarI	GAAGNNNNNNTAC	2 cut(s)	260, 292
BauI	CACGAG	1 cut(s)	831
BbvI	GCAGC	7 cut(s)	367, 415, 484, 637, 671, 779, 848
BccI	CCATC	1 cut(s)	577
BciT130I	CCWGG	1 cut(s)	471
BfaI	CTAG	2 cut(s)	342, 594
BfmI	CTRYAG	3 cut(s)	388, 765, 867
BfuAI	ACCTGC	1 cut(s)	653
BisI	GCNGC	8 cut(s)	381, 429, 498, 651, 660, 768, 837, 870
BlsI	GCNGC	8 cut(s)	382, 430, 499, 652, 661, 769, 838, 871
Bme1390I	CCNGG	1 cut(s)	471
Bme18I	GGWCC	1 cut(s)	601
BmgT120I	GGNCC	1 cut(s)	601
BmiI	GGNNCC	4 cut(s)	192, 630, 667, 817
BmrFI	CCNGG	1 cut(s)	471
BmsI	GCATC	3 cut(s)	163, 848, 872
BpmI	CTGGAG	1 cut(s)	498
BsaBI	GATNNNNATC	1 cut(s)	862
BsaJI	CCNNGG	3 cut(s)	40, 443, 624
BsaWI	WCCGGW	1 cut(s)	556
Bsc4I	CCNNNNNNNGG	1 cut(s)	470
Bse1I	ACTGG	2 cut(s)	582, 819
Bse3DI	GCAATG	1 cut(s)	744
Bse8I	GATNNNNATC	1 cut(s)	862
BseBI	CCWGG	1 cut(s)	471
BseDI	CCNNGG	3 cut(s)	40, 443, 624
BseGI	GGATG	1 cut(s)	758
BseJI	GATNNNNATC	1 cut(s)	862
BseLI	CCNNNNNNNGG	1 cut(s)	470
BseMI	GCAATG	1 cut(s)	744
BseNI	ACTGG	2 cut(s)	582, 819
BseXI	GCAGC	7 cut(s)	367, 415, 484, 637, 671, 779, 848
BshFI	GGCC	2 cut(s)	448, 708
BshNI	GGYRCC	1 cut(s)	815
BsiSI	CCGG	2 cut(s)	95, 557
BslI	CCNNNNNNNGG	1 cut(s)	470
BsnI	GGCC	2 cut(s)	448, 708
Bsp143I	GATC	4 cut(s)	8, 36, 99, 857
BspACI	CCGC	2 cut(s)	566, 788
BspANI	GGCC	2 cut(s)	448, 708
BspLI	GGNNCC	4 cut(s)	192, 630, 667, 817
BspMAI	CTGCAG	2 cut(s)	769, 871
BspMI	ACCTGC	1 cut(s)	653
BspPI	GGATC	2 cut(s)	16, 31
BspQI	GCTCTTC	1 cut(s)	224
BspT107I	GGYRCC	1 cut(s)	815
BsrDI	GCAATG	1 cut(s)	744
BsrI	ACTGG	2 cut(s)	582, 819
BssECI	CCNNGG	3 cut(s)	40, 443, 624
BssMI	GATC	4 cut(s)	8, 36, 99, 857
BssSI	CACGAG	1 cut(s)	831
BssT1I	CCWWGG	3 cut(s)	40, 443, 624
Bst2BI	CACGAG	1 cut(s)	831
Bst2UI	CCWGG	1 cut(s)	471
Bst4CI	ACNGT	3 cut(s)	79, 154, 878
Bst6I	CTCTTC	2 cut(s)	224, 720
BstC8I	GCNNGC	4 cut(s)	385, 502, 506, 510
BstDEI	CTNAG	2 cut(s)	210, 335
BstF5I	GGATG	1 cut(s)	758
BstKTI	GATC	4 cut(s)	11, 39, 102, 860
BstMBI	GATC	4 cut(s)	8, 36, 99, 857
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 656, 659, 869
BstNI	CCWGG	1 cut(s)	471
BstSCI	CCNGG	1 cut(s)	469
BstSFI	CTRYAG	3 cut(s)	388, 765, 867
BstV1I	GCAGC	7 cut(s)	367, 415, 484, 637, 671, 779, 848
BsuRI	GGCC	2 cut(s)	448, 708
BtsCI	GGATG	1 cut(s)	758
BtsI	GCAGTG	1 cut(s)	759
BtsIMutI	CAGTG	1 cut(s)	759
BveI	ACCTGC	1 cut(s)	653
Cac8I	GCNNGC	4 cut(s)	385, 502, 506, 510
CaiI	CAGNNNCTG	1 cut(s)	773
Cfr13I	GGNCC	1 cut(s)	601
CsiI	ACCWGGT	1 cut(s)	469
Csp6I	GTAC	2 cut(s)	268, 585
CviAII	CATG	2 cut(s)	186, 302
CviQI	GTAC	2 cut(s)	268, 585
DdeI	CTNAG	2 cut(s)	210, 335
DpnI	GATC	4 cut(s)	10, 38, 101, 859
DpnII	GATC	4 cut(s)	8, 36, 99, 857
EaeI	YGGCCR	1 cut(s)	706
Eam1104I	CTCTTC	2 cut(s)	224, 720
EarI	CTCTTC	2 cut(s)	224, 720
EciI	GGCGGA	1 cut(s)	777
Eco130I	CCWWGG	3 cut(s)	40, 443, 624
Eco147I	AGGCCT	1 cut(s)	448
Eco32I	GATATC	1 cut(s)	355
Eco47I	GGWCC	1 cut(s)	601
Eco57I	CTGAAG	2 cut(s)	744, 768
EcoRII	CCWGG	1 cut(s)	469
EcoRV	GATATC	1 cut(s)	355
EcoT14I	CCWWGG	3 cut(s)	40, 443, 624
ErhI	CCWWGG	3 cut(s)	40, 443, 624
FaeI	CATG	2 cut(s)	189, 305
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
FatI	CATG	2 cut(s)	185, 301
Fnu4HI	GCNGC	8 cut(s)	381, 429, 498, 651, 660, 768, 837, 870
FokI	GGATG	1 cut(s)	745
Fsp4HI	GCNGC	8 cut(s)	381, 429, 498, 651, 660, 768, 837, 870
FspBI	CTAG	2 cut(s)	342, 594
GluI	GCNGC	8 cut(s)	381, 429, 498, 651, 660, 768, 837, 870
GsuI	CTGGAG	1 cut(s)	498
HaeIII	GGCC	2 cut(s)	448, 708
HapII	CCGG	2 cut(s)	95, 557
Hin1II	CATG	2 cut(s)	189, 305
HincII	GTYRAC	1 cut(s)	530
HindII	GTYRAC	1 cut(s)	530
HinfI	GANTC	2 cut(s)	272, 698
HpaII	CCGG	2 cut(s)	95, 557
HphI	GGTGA	2 cut(s)	182, 362
Hpy166II	GTNNAC	2 cut(s)	268, 530
Hpy188I	TCNGA	1 cut(s)	396
Hpy8I	GTNNAC	2 cut(s)	268, 530
HpyAV	CCTTC	2 cut(s)	286, 806
HpyCH4III	ACNGT	3 cut(s)	79, 154, 878
HpyCH4V	TGCA	7 cut(s)	296, 383, 418, 742, 767, 863, 869
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 656, 659, 869
HpyF3I	CTNAG	2 cut(s)	210, 335
Hsp92II	CATG	2 cut(s)	189, 305
Kzo9I	GATC	4 cut(s)	8, 36, 99, 857
LguI	GCTCTTC	1 cut(s)	224
LmnI	GCTCC	4 cut(s)	517, 523, 634, 694
Lsp1109I	GCAGC	7 cut(s)	367, 415, 484, 637, 671, 779, 848
LweI	GCATC	3 cut(s)	163, 848, 872
MabI	ACCWGGT	1 cut(s)	469
MaeI	CTAG	2 cut(s)	342, 594
MaeIII	GTNAC	1 cut(s)	754
MalI	GATC	4 cut(s)	10, 38, 101, 859
MboI	GATC	4 cut(s)	8, 36, 99, 857
MboII	GAAGA	4 cut(s)	211, 572, 582, 737
MlsI	TGGCCA	1 cut(s)	708
MluNI	TGGCCA	1 cut(s)	708
MmeI	TCCRAC	1 cut(s)	309
MnlI	CCTC	6 cut(s)	17, 156, 459, 721, 727, 772
Mox20I	TGGCCA	1 cut(s)	708
MroXI	GAANNNNTTC	1 cut(s)	108
MscI	TGGCCA	1 cut(s)	708
MseI	TTAA	1 cut(s)	845
MslI	CAYNNNNRTG	1 cut(s)	306
Msp20I	TGGCCA	1 cut(s)	708
MspI	CCGG	2 cut(s)	95, 557
MspR9I	CCNGG	1 cut(s)	471
MvaI	CCWGG	1 cut(s)	471
MwoI	GCNNNNNNNGC	4 cut(s)	56, 656, 659, 869
NdeII	GATC	4 cut(s)	8, 36, 99, 857
NlaIII	CATG	2 cut(s)	189, 305
NlaIV	GGNNCC	4 cut(s)	192, 630, 667, 817
NmuCI	GTSAC	1 cut(s)	754
PceI	AGGCCT	1 cut(s)	448
PciSI	GCTCTTC	1 cut(s)	224
PcsI	WCGNNNNNNNCGW	1 cut(s)	829
PdmI	GAANNNNTTC	1 cut(s)	108
PfeI	GAWTC	2 cut(s)	272, 698
PkrI	GCNGC	8 cut(s)	382, 430, 499, 652, 661, 769, 838, 871
Psp6I	CCWGG	1 cut(s)	469
PspGI	CCWGG	1 cut(s)	469
PspN4I	GGNNCC	4 cut(s)	192, 630, 667, 817
PspPI	GGNCC	1 cut(s)	601
PstI	CTGCAG	2 cut(s)	769, 871
PstNI	CAGNNNCTG	1 cut(s)	773
RsaI	GTAC	2 cut(s)	269, 586
RsaNI	GTAC	2 cut(s)	268, 585
RseI	CAYNNNNRTG	1 cut(s)	306
SapI	GCTCTTC	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	845
SatI	GCNGC	8 cut(s)	381, 429, 498, 651, 660, 768, 837, 870
Sau3AI	GATC	4 cut(s)	8, 36, 99, 857
Sau96I	GGNCC	1 cut(s)	601
ScrFI	CCNGG	1 cut(s)	471
SexAI	ACCWGGT	1 cut(s)	469
SfaNI	GCATC	3 cut(s)	163, 848, 872
SfcI	CTRYAG	3 cut(s)	388, 765, 867
SinI	GGWCC	1 cut(s)	601
SmiMI	CAYNNNNRTG	1 cut(s)	306
SseBI	AGGCCT	1 cut(s)	448
SsiI	CCGC	2 cut(s)	566, 788
SspMI	CTAG	2 cut(s)	342, 594
StuI	AGGCCT	1 cut(s)	448
StyD4I	CCNGG	1 cut(s)	469
StyI	CCWWGG	3 cut(s)	40, 443, 624
TaaI	ACNGT	3 cut(s)	79, 154, 878
TaqI	TCGA	1 cut(s)	102
TatI	WGTACW	1 cut(s)	584
TfiI	GAWTC	2 cut(s)	272, 698
Tru1I	TTAA	1 cut(s)	845
Tru9I	TTAA	1 cut(s)	845
TscAI	CASTG	1 cut(s)	759
TseFI	GTSAC	1 cut(s)	754
TseI	GCWGC	8 cut(s)	380, 428, 497, 650, 659, 767, 836, 869
Tsp45I	GTSAC	1 cut(s)	754
TspDTI	ATGAA	2 cut(s)	174, 211
TspRI	CASTG	1 cut(s)	759
VpaK11BI	GGWCC	1 cut(s)	601
XmnI	GAANNNNTTC	1 cut(s)	108
XspI	CTAG	2 cut(s)	342, 594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.